Gene annotation
Transcriptome id Sobic.001G109400.1,Sobic.001G109400.2
Synonym Sb01g009770
Functional annotation glycosyl hydrolases family 17, putative, expressed
UniProt A0A1Z5S569 , C5WMW8
Pfam PF00332
Panther DB PTHR32227 PTHR32227:SF107
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT5G42720 : Glycosyl hydrolase family 17 protein
RAP-DB (Rice) LOC_Os03g51240.2,LOC_Os03g51240.3 : glycosyl hydrolases family 17, putative, expressed
MaizeGDB (Corn) Zm00025a007523 , Zm00025a019568 , Zm00025a016919 , Zm00025a017147 , Zm00025a001447
Brachypodium KQK22721 , KQK13467 , PNT77798 , PNT77799 , KQK22839 , PNT77796 , PNT77797 , PNT74215
Barley HORVU4Hr1G065340.16 , HORVU4Hr1G065340.17 , HORVU4Hr1G065340.14 , HORVU4Hr1G065340.15 , HORVU4Hr1G065340.12 , HORVU4Hr1G065340.13 , HORVU4Hr1G065340.10 , HORVU4Hr1G065340.11 , HORVU4Hr1G008950.3 , HORVU4Hr1G003090.2 , HORVU4Hr1G003090.3 , HORVU4Hr1G065340.8 , HORVU4Hr1G065340.9 , HORVU4Hr1G008950.5 , HORVU4Hr1G065340.4 , HORVU4Hr1G065340.5 , HORVU4Hr1G065340.6 , HORVU4Hr1G065340.7 , HORVU4Hr1G065340.1 , HORVU4Hr1G065340.2 , HORVU4Hr1G065340.3 , HORVU4Hr1G008950.8 , HORVU4Hr1G008950.9 , HORVU4Hr1G008950.4 , HORVU4Hr1G008950.6 , HORVU4Hr1G008950.7 , HORVU4Hr1G008950.1 , HORVU4Hr1G008950.2
Wheat TraesCS4B02G020100 , TraesCS4B02G053700 , TraesCS4B02G053700 , TraesCS4A02G077800 , TraesCS4D02G053700 , TraesCS4D02G053700 , TraesCS4D02G018300 , TraesCS4A02G260900 , TraesCS4D02G235000 , TraesCS4A02G260900 , TraesCS4A02G293500 , TraesCS4B02G233900 , TraesCS4B02G233900 , TraesCS4B02G233900 , TraesCS4B02G233900
Populus -


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cDNA sequences
Sobic.001G109400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G212900 FHA domain containing protein, putative, expressed K10867: NBN, nibrin
2 Sobic.004G072201 - -
3 Sobic.002G374000 - -
4 Sobic.002G187900 expressed protein -
5 Sobic.001G383200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@bromodomain domain containing protein, expressed -
6 Sobic.006G249600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
7 Sobic.006G255200 - -
8 Sobic.004G315400 cation efflux family protein, putative, expressed -
9 Sobic.008G016800 zinc finger DHHC domain-containing protein, putative, expressed -
10 Sobic.010G012200 - K00851: E2.7.1.12, gntK, gluconokinase
11 Sobic.003G263900 reticulon domain containing protein, putative, expressed -
12 Sobic.004G127600 glyoxalase family protein, putative, expressed K01759: GLO1, lactoylglutathione lyase
13 Sobic.006G157450 - -
14 Sobic.002G110600 regulatory protein, putative, expressed -
15 Sobic.001G038700 membrane associated DUF588 domain containing protein, putative, expressed -
16 Sobic.003G253700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
17 Sobic.001G520000 auxin efflux carrier component, putative, expressed -
18 Sobic.010G000200 expressed protein -
19 Sobic.008G103400 universal stress protein domain containing protein, putative, expressed -
20 Sobic.002G398600 cytochrome P450 72A1, putative, expressed K15639: CYP734A1, PHYB activation tagged suppressor 1


Gene co-expression network
sample Sobic001G109400 Sobic001G109400 Sobic001G212900 Sobic001G212900 Sobic001G109400--Sobic001G212900 Sobic004G072201 Sobic004G072201 Sobic001G109400--Sobic004G072201 Sobic002G374000 Sobic002G374000 Sobic001G109400--Sobic002G374000 Sobic002G187900 Sobic002G187900 Sobic001G109400--Sobic002G187900 Sobic001G383200 Sobic001G383200 Sobic001G109400--Sobic001G383200 Sobic006G249600 Sobic006G249600 Sobic001G109400--Sobic006G249600 Sobic006G255200 Sobic006G255200 Sobic001G109400--Sobic006G255200 Sobic004G315400 Sobic004G315400 Sobic001G109400--Sobic004G315400 Sobic008G016800 Sobic008G016800 Sobic001G109400--Sobic008G016800 Sobic001G212900--Sobic001G109400 Sobic001G212900--Sobic006G249600 Sobic001G212900--Sobic002G187900 Sobic001G212900--Sobic002G374000 Sobic010G000200 Sobic010G000200 Sobic001G212900--Sobic010G000200 Sobic002G110600 Sobic002G110600 Sobic001G212900--Sobic002G110600 Sobic004G127600 Sobic004G127600 Sobic001G212900--Sobic004G127600 Sobic004G173200 Sobic004G173200 Sobic001G212900--Sobic004G173200 Sobic010G012200 Sobic010G012200 Sobic001G212900--Sobic010G012200 Sobic004G072201--Sobic001G383200 Sobic004G072201--Sobic002G374000 Sobic004G072201--Sobic001G109400 Sobic002G309300 Sobic002G309300 Sobic004G072201--Sobic002G309300 Sobic001G038700 Sobic001G038700 Sobic004G072201--Sobic001G038700 Sobic001G442000 Sobic001G442000 Sobic004G072201--Sobic001G442000 Sobic004G072201--Sobic006G255200 Sobic003G263900 Sobic003G263900 Sobic004G072201--Sobic003G263900 Sobic007G183600 Sobic007G183600 Sobic004G072201--Sobic007G183600 Sobic002G374000--Sobic004G072201 Sobic002G374000--Sobic001G109400 Sobic002G374000--Sobic004G315400 Sobic002G374000--Sobic001G212900 Sobic002G374000--Sobic001G383200 Sobic002G374000--Sobic004G127600 Sobic002G374000--Sobic007G183600 Sobic003G069601 Sobic003G069601 Sobic002G374000--Sobic003G069601 Sobic002G374000--Sobic010G012200 Sobic002G187900--Sobic003G263900 Sobic002G187900--Sobic006G255200 Sobic002G187900--Sobic004G127600 Sobic002G187900--Sobic006G249600 Sobic002G187900--Sobic001G109400 Sobic002G187900--Sobic001G212900 Sobic004G227700 Sobic004G227700 Sobic002G187900--Sobic004G227700 Sobic002G187900--Sobic004G173200 Sobic002G398600 Sobic002G398600 Sobic002G187900--Sobic002G398600 Sobic001G383200--Sobic004G072201 Sobic001G383200--Sobic001G109400 Sobic001G383200--Sobic002G374000 Sobic001G383200--Sobic002G309300 Sobic001G383200--Sobic003G263900 Sobic006G157450 Sobic006G157450 Sobic001G383200--Sobic006G157450 Sobic001G383200--Sobic001G038700 Sobic008G103400 Sobic008G103400 Sobic001G383200--Sobic008G103400 Sobic001G383200--Sobic006G255200 Sobic006G249600--Sobic001G212900 Sobic006G249600--Sobic002G398600 Sobic006G249600--Sobic002G187900 Sobic003G253700 Sobic003G253700 Sobic006G249600--Sobic003G253700 Sobic003G155000 Sobic003G155000 Sobic006G249600--Sobic003G155000 Sobic006G249600--Sobic003G263900 Sobic006G249600--Sobic001G109400 Sobic006G249600--Sobic004G173200 Sobic006G249600--Sobic006G157450 Sobic006G255200--Sobic002G187900 Sobic006G255200--Sobic003G263900 Sobic006G255200--Sobic002G309300 Sobic006G255200--Sobic001G442000 Sobic006G255200--Sobic004G127600 Sobic006G255200--Sobic004G072201 Sobic006G255200--Sobic001G109400 Sobic004G218400 Sobic004G218400 Sobic006G255200--Sobic004G218400 Sobic001G370800 Sobic001G370800 Sobic006G255200--Sobic001G370800 Sobic004G315400--Sobic002G374000 Sobic004G315400--Sobic010G012200 Sobic004G315400--Sobic001G109400 Sobic004G315400--Sobic001G212900 Sobic004G315400--Sobic008G103400 Sobic001G483001 Sobic001G483001 Sobic004G315400--Sobic001G483001 Sobic004G315400--Sobic004G072201 Sobic005G031400 Sobic005G031400 Sobic004G315400--Sobic005G031400 Sobic004G315400--Sobic002G110600 Sobic008G016800--Sobic002G110600 Sobic008G016800--Sobic001G109400 Sobic008G016800--Sobic008G103400 Sobic008G016800--Sobic002G398600 Sobic008G016800--Sobic001G212900 Sobic008G016800--Sobic006G249600 Sobic003G362800 Sobic003G362800 Sobic008G016800--Sobic003G362800 Sobic008G016800--Sobic001G383200 Sobic001G191300 Sobic001G191300 Sobic008G016800--Sobic001G191300
Octagon: transcription factors


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