Gene annotation
Transcriptome id Sobic.001G191400.2
Synonym RING1A, ATRING1A
Functional annotation zinc finger C3HC4 type family protein, putative, expressed
UniProt A0A1Z5S6Q2
Pfam PF00097
Panther DB PTHR10825 PTHR10825:SF33
NCBI CDD -
KEGG Orthology K10695; E3 ubiquitin-protein ligase RNF1/2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G44280 : RING 1A
RAP-DB (Rice) LOC_Os05g41795.1 : zinc finger C3HC4 type family protein, putative, expressed
MaizeGDB (Corn) Zm00025a006266
Brachypodium -
Barley -
Wheat -
Populus PNT11961 , PNT11960


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G337700 expressed protein -
2 Sobic.007G090406 - -
3 Sobic.005G155001 - -
4 Sobic.009G114900 - -
5 Sobic.010G021401 - -
6 Sobic.003G030200 phosphopantothenoylcysteine decarboxylase, putative, expressed K01598: PPCDC, phosphopantothenoylcysteine decarboxylase
7 Sobic.005G204900 Lipase class 3 family protein (At)(PubMedID : 27208977)@lipase class 3 family protein, putative, expressed -
8 Sobic.001G341900 domain of unknown function domain containing protein, expressed -
9 Sobic.001G490600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal L18p/L5e family protein, putative, expressed -
10 Sobic.003G093500 protein binding protein, putative, expressed -
11 Sobic.006G140900 methyltransferase domain containing protein, putative, expressed K03183: demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase
12 Sobic.008G185000 - -
13 Sobic.002G138200 domain of unknown function DUF966 domain containing protein, expressed -
14 Sobic.002G252700 vignain precursor, putative, expressed -
15 Sobic.009G184500 cysteine proteinase inhibitor precursor protein, putative, expressed -
16 Sobic.008G192800 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
17 Sobic.001G368000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@annexin, putative, expressed -
18 Sobic.004G288900 protein kinase, putative, expressed -
19 Sobic.001G312801 - -
20 Sobic.009G004500 expressed protein -


Gene co-expression network
sample Sobic001G191400 Sobic001G191400 Sobic004G337700 Sobic004G337700 Sobic001G191400--Sobic004G337700 Sobic007G090406 Sobic007G090406 Sobic001G191400--Sobic007G090406 Sobic005G155001 Sobic005G155001 Sobic001G191400--Sobic005G155001 Sobic009G114900 Sobic009G114900 Sobic001G191400--Sobic009G114900 Sobic010G021401 Sobic010G021401 Sobic001G191400--Sobic010G021401 Sobic003G030200 Sobic003G030200 Sobic001G191400--Sobic003G030200 Sobic005G204900 Sobic005G204900 Sobic001G191400--Sobic005G204900 Sobic001G341900 Sobic001G341900 Sobic001G191400--Sobic001G341900 Sobic001G490600 Sobic001G490600 Sobic001G191400--Sobic001G490600 Sobic003G093500 Sobic003G093500 Sobic004G337700--Sobic003G093500 Sobic004G337700--Sobic001G341900 Sobic002G006001 Sobic002G006001 Sobic004G337700--Sobic002G006001 Sobic003G106100 Sobic003G106100 Sobic004G337700--Sobic003G106100 Sobic004G314100 Sobic004G314100 Sobic004G337700--Sobic004G314100 Sobic004G337700--Sobic001G191400 Sobic001G060200 Sobic001G060200 Sobic004G337700--Sobic001G060200 Sobic004G337700--Sobic005G155001 Sobic007G061500 Sobic007G061500 Sobic004G337700--Sobic007G061500 Sobic008G192800 Sobic008G192800 Sobic007G090406--Sobic008G192800 Sobic007G090406--Sobic009G114900 Sobic007G090406--Sobic005G155001 Sobic001G176800 Sobic001G176800 Sobic007G090406--Sobic001G176800 Sobic009G004500 Sobic009G004500 Sobic007G090406--Sobic009G004500 Sobic007G090406--Sobic010G021401 Sobic006G280900 Sobic006G280900 Sobic007G090406--Sobic006G280900 Sobic009G083100 Sobic009G083100 Sobic007G090406--Sobic009G083100 Sobic004G184500 Sobic004G184500 Sobic007G090406--Sobic004G184500 Sobic001G483200 Sobic001G483200 Sobic005G155001--Sobic001G483200 Sobic005G155001--Sobic009G114900 Sobic005G155001--Sobic009G004500 Sobic007G017300 Sobic007G017300 Sobic005G155001--Sobic007G017300 Sobic005G155001--Sobic010G021401 Sobic001G527900 Sobic001G527900 Sobic005G155001--Sobic001G527900 Sobic001G368000 Sobic001G368000 Sobic005G155001--Sobic001G368000 Sobic008G185000 Sobic008G185000 Sobic005G155001--Sobic008G185000 Sobic005G155001--Sobic007G090406 Sobic009G114900--Sobic005G155001 Sobic009G114900--Sobic010G021401 Sobic009G114900--Sobic007G090406 Sobic002G252700 Sobic002G252700 Sobic009G114900--Sobic002G252700 Sobic009G114900--Sobic009G004500 Sobic006G093400 Sobic006G093400 Sobic009G114900--Sobic006G093400 Sobic009G114900--Sobic008G192800 Sobic009G114900--Sobic001G527900 Sobic009G114900--Sobic001G483200 Sobic010G021401--Sobic005G155001 Sobic010G021401--Sobic009G114900 Sobic010G021401--Sobic009G004500 Sobic010G021401--Sobic001G483200 Sobic010G021401--Sobic001G527900 Sobic010G021401--Sobic007G090406 Sobic010G021401--Sobic002G252700 Sobic010G021401--Sobic008G185000 Sobic010G021401--Sobic008G192800 Sobic001G312801 Sobic001G312801 Sobic003G030200--Sobic001G312801 Sobic003G030200--Sobic001G490600 Sobic009G147600 Sobic009G147600 Sobic003G030200--Sobic009G147600 Sobic003G030200--Sobic001G191400 Sobic003G030200--Sobic001G368000 Sobic003G030200--Sobic003G106100 Sobic007G213500 Sobic007G213500 Sobic003G030200--Sobic007G213500 Sobic003G030200--Sobic007G017300 Sobic003G301950 Sobic003G301950 Sobic003G030200--Sobic003G301950 Sobic005G204900--Sobic001G191400 Sobic001G513900 Sobic001G513900 Sobic005G204900--Sobic001G513900 Sobic005G204900--Sobic003G030200 Sobic005G204900--Sobic001G490600 Sobic009G020800 Sobic009G020800 Sobic005G204900--Sobic009G020800 Sobic009G184500 Sobic009G184500 Sobic005G204900--Sobic009G184500 Sobic010G150600 Sobic010G150600 Sobic005G204900--Sobic010G150600 Sobic008G096300 Sobic008G096300 Sobic005G204900--Sobic008G096300 Sobic001G400101 Sobic001G400101 Sobic005G204900--Sobic001G400101 Sobic001G341900--Sobic003G093500 Sobic001G341900--Sobic007G061500 Sobic001G341900--Sobic009G004500 Sobic004G224100 Sobic004G224100 Sobic001G341900--Sobic004G224100 Sobic001G341900--Sobic004G337700 Sobic001G341900--Sobic008G192800 Sobic009G045100 Sobic009G045100 Sobic001G341900--Sobic009G045100 Sobic001G341900--Sobic001G368000 Sobic001G341900--Sobic009G114900 Sobic001G490600--Sobic009G184500 Sobic001G490600--Sobic001G368000 Sobic001G490600--Sobic007G017300 Sobic001G490600--Sobic009G004500 Sobic001G490600--Sobic001G312801 Sobic001G490600--Sobic008G185000 Sobic009G170301 Sobic009G170301 Sobic001G490600--Sobic009G170301 Sobic001G490600--Sobic001G483200 Sobic001G490600--Sobic005G155001
Octagon: transcription factors


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