Gene annotation
Transcriptome id Sobic.002G252700.1
Synonym Sb02g028840, SAG12
Functional annotation vignain precursor, putative, expressed
UniProt A0A1B6QDF1
Pfam PF08246 PF00112
Panther DB PTHR12411 PTHR12411:SF382
NCBI CDD KOG1542; Cysteine proteinase Cathepsin F KOG1543Cysteine proteinase Cathepsin L
KEGG Orthology -
Gene Ontology GO:0008234; cysteine-type peptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT5G45890 : senescence-associated gene 12
RAP-DB (Rice) LOC_Os09g32230.1 : vignain precursor, putative, expressed
MaizeGDB (Corn) Zm00025a014258 , Zm00025a013528 , Zm00025a049928 , Zm00025a016788 , Zm00025a049927 , Zm00025a021807 , Zm00025a015737
Brachypodium KQK03509 , KQJ90836
Barley HORVU5Hr1G074780.2 , HORVU5Hr1G074780.3 , HORVU5Hr1G074780.1
Wheat TraesCS5B02G274600 , TraesCS6D02G144000 , TraesCS4D02G074800 , TraesCS4D02G074800 , TraesCS5D02G282500 , TraesCS6B02G182200 , TraesCS6A02G154300
Populus -


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cDNA sequences
Sobic.002G252700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G114900 - -
2 Sobic.010G021401 - -
3 Sobic.006G093400 potassium channel SKOR, putative, expressed -
4 Sobic.005G155001 - -
5 Sobic.008G185000 - -
6 Sobic.008G192800 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
7 Sobic.009G004500 expressed protein -
8 Sobic.008G096900 protein of unknown function DUF502 domain containing protein, expressed -
9 Sobic.010G257300 serine esterase, putative, expressed K15889: prenylcysteine alpha-carboxyl methylesterase
10 Sobic.001G537600 expressed protein -
11 Sobic.007G090406 - -
12 Sobic.001G068901 - -
13 Sobic.009G072400 ABC transporter, ATP-binding protein, putative, expressed -
14 Sobic.001G483200 ataxin-2 C-terminal region family protein, expressed -
15 Sobic.001G368000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@annexin, putative, expressed -
16 Sobic.007G061500 double-strand break repair protein MRE11, putative, expressed K10865: double-strand break repair protein MRE11
17 Sobic.007G017300 endoglucanase, putative, expressed -
18 Sobic.010G253700 - -
19 Sobic.001G341900 domain of unknown function domain containing protein, expressed -
20 Sobic.001G435800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calcium-binding EF hand family protein, putative, expressed -


Gene co-expression network
sample Sobic002G252700 Sobic002G252700 Sobic009G114900 Sobic009G114900 Sobic002G252700--Sobic009G114900 Sobic010G021401 Sobic010G021401 Sobic002G252700--Sobic010G021401 Sobic006G093400 Sobic006G093400 Sobic002G252700--Sobic006G093400 Sobic005G155001 Sobic005G155001 Sobic002G252700--Sobic005G155001 Sobic008G185000 Sobic008G185000 Sobic002G252700--Sobic008G185000 Sobic008G192800 Sobic008G192800 Sobic002G252700--Sobic008G192800 Sobic009G004500 Sobic009G004500 Sobic002G252700--Sobic009G004500 Sobic008G096900 Sobic008G096900 Sobic002G252700--Sobic008G096900 Sobic010G257300 Sobic010G257300 Sobic002G252700--Sobic010G257300 Sobic009G114900--Sobic005G155001 Sobic009G114900--Sobic010G021401 Sobic007G090406 Sobic007G090406 Sobic009G114900--Sobic007G090406 Sobic009G114900--Sobic002G252700 Sobic009G114900--Sobic009G004500 Sobic009G114900--Sobic006G093400 Sobic009G114900--Sobic008G192800 Sobic001G527900 Sobic001G527900 Sobic009G114900--Sobic001G527900 Sobic001G483200 Sobic001G483200 Sobic009G114900--Sobic001G483200 Sobic010G021401--Sobic005G155001 Sobic010G021401--Sobic009G114900 Sobic010G021401--Sobic009G004500 Sobic010G021401--Sobic001G483200 Sobic010G021401--Sobic001G527900 Sobic010G021401--Sobic007G090406 Sobic010G021401--Sobic002G252700 Sobic010G021401--Sobic008G185000 Sobic010G021401--Sobic008G192800 Sobic006G093400--Sobic010G257300 Sobic001G068901 Sobic001G068901 Sobic006G093400--Sobic001G068901 Sobic006G232300 Sobic006G232300 Sobic006G093400--Sobic006G232300 Sobic006G093400--Sobic009G114900 Sobic010G253700 Sobic010G253700 Sobic006G093400--Sobic010G253700 Sobic004G012100 Sobic004G012100 Sobic006G093400--Sobic004G012100 Sobic006G093400--Sobic005G155001 Sobic006G093400--Sobic001G483200 Sobic001G537600 Sobic001G537600 Sobic006G093400--Sobic001G537600 Sobic005G155001--Sobic001G483200 Sobic005G155001--Sobic009G114900 Sobic005G155001--Sobic009G004500 Sobic007G017300 Sobic007G017300 Sobic005G155001--Sobic007G017300 Sobic005G155001--Sobic010G021401 Sobic005G155001--Sobic001G527900 Sobic001G368000 Sobic001G368000 Sobic005G155001--Sobic001G368000 Sobic005G155001--Sobic008G185000 Sobic005G155001--Sobic007G090406 Sobic008G185000--Sobic005G155001 Sobic008G185000--Sobic009G004500 Sobic008G185000--Sobic001G483200 Sobic001G490600 Sobic001G490600 Sobic008G185000--Sobic001G490600 Sobic008G185000--Sobic010G021401 Sobic008G185000--Sobic001G368000 Sobic008G185000--Sobic007G017300 Sobic008G185000--Sobic009G114900 Sobic008G185000--Sobic002G252700 Sobic008G192800--Sobic007G090406 Sobic008G192800--Sobic009G004500 Sobic003G093500 Sobic003G093500 Sobic008G192800--Sobic003G093500 Sobic001G176800 Sobic001G176800 Sobic008G192800--Sobic001G176800 Sobic008G192800--Sobic009G114900 Sobic008G192800--Sobic005G155001 Sobic008G192800--Sobic007G017300 Sobic007G061500 Sobic007G061500 Sobic008G192800--Sobic007G061500 Sobic008G192800--Sobic001G368000 Sobic009G004500--Sobic007G017300 Sobic009G004500--Sobic001G483200 Sobic009G004500--Sobic005G155001 Sobic009G004500--Sobic001G368000 Sobic009G004500--Sobic007G061500 Sobic001G028500 Sobic001G028500 Sobic009G004500--Sobic001G028500 Sobic009G004500--Sobic003G093500 Sobic009G004500--Sobic010G021401 Sobic001G060200 Sobic001G060200 Sobic009G004500--Sobic001G060200 Sobic006G037000 Sobic006G037000 Sobic008G096900--Sobic006G037000 Sobic007G174100 Sobic007G174100 Sobic008G096900--Sobic007G174100 Sobic008G096900--Sobic010G257300 Sobic008G096900--Sobic001G537600 Sobic005G076100 Sobic005G076100 Sobic008G096900--Sobic005G076100 Sobic008G096900--Sobic004G012100 Sobic008G096900--Sobic010G253700 Sobic009G031300 Sobic009G031300 Sobic008G096900--Sobic009G031300 Sobic002G326200 Sobic002G326200 Sobic008G096900--Sobic002G326200 Sobic010G257300--Sobic006G093400 Sobic010G257300--Sobic004G012100 Sobic009G258150 Sobic009G258150 Sobic010G257300--Sobic009G258150 Sobic010G257300--Sobic001G068901 Sobic010G257300--Sobic010G253700 Sobic010G257300--Sobic001G537600 Sobic009G072400 Sobic009G072400 Sobic010G257300--Sobic009G072400 Sobic010G257300--Sobic008G096900 Sobic003G379500 Sobic003G379500 Sobic010G257300--Sobic003G379500
Octagon: transcription factors


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