Gene annotation
Transcriptome id Sobic.001G435800.1,Sobic.001G435800.2
Synonym Sb01g041000
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
calcium-binding EF hand family protein, putative, expressed
UniProt A0A1B6QPD2 , A0A1B6QPB8
Pfam -
Panther DB PTHR34574 PTHR34574:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G38810 : Calcium-binding EF-hand family protein
RAP-DB (Rice) LOC_Os03g14590.1 : calcium-binding EF hand family protein, putative, expressed
MaizeGDB (Corn) Zm00025a001582
Brachypodium KQK22555 , KQK22554
Barley HORVU4Hr1G062940.5 , HORVU4Hr1G062940.9 , HORVU4Hr1G062940.8 , HORVU4Hr1G062940.3 , HORVU4Hr1G062940.2 , HORVU4Hr1G062940.1 , HORVU4Hr1G062940.7 , HORVU4Hr1G062940.4 , HORVU4Hr1G062940.6
Wheat TraesCS4B02G223400 , TraesCS4B02G223400 , TraesCS2D02G417100 , TraesCS2A02G420000 , TraesCS4A02G080600 , TraesCS4A02G080600 , TraesCS2D02G417100 , TraesCS2B02G439100
Populus -


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cDNA sequences
Sobic.001G435800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G021401 - -
2 Sobic.009G072400 ABC transporter, ATP-binding protein, putative, expressed -
3 Sobic.009G114900 - -
4 Sobic.005G155001 - -
5 Sobic.002G314950 - -
6 Sobic.008G096900 protein of unknown function DUF502 domain containing protein, expressed -
7 Sobic.008G185000 - -
8 Sobic.010G257300 serine esterase, putative, expressed K15889: prenylcysteine alpha-carboxyl methylesterase
9 Sobic.010G220100 cell cycle control protein, putative, expressed -
10 Sobic.006G093400 potassium channel SKOR, putative, expressed -
11 Sobic.002G252700 vignain precursor, putative, expressed -
12 Sobic.010G253700 - -
13 Sobic.009G004500 expressed protein -
14 Sobic.001G068901 - -
15 Sobic.005G145700 - -
16 Sobic.004G012100 basic helix-loop-helix DND-binding domain containing protein, expressed -
17 Sobic.001G483200 ataxin-2 C-terminal region family protein, expressed -
18 Sobic.001G527900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nascent polypeptide-associated complex subunit alpha, putative, expressed K03626: EGD2, nascent polypeptide-associated complex subunit alpha
19 Sobic.007G090406 - -
20 Sobic.010G278300 OsPOP15 - Putative Prolyl Oligopeptidase homologue, expressed K01354: oligopeptidase B


Gene co-expression network
sample Sobic001G435800 Sobic001G435800 Sobic010G021401 Sobic010G021401 Sobic001G435800--Sobic010G021401 Sobic009G072400 Sobic009G072400 Sobic001G435800--Sobic009G072400 Sobic009G114900 Sobic009G114900 Sobic001G435800--Sobic009G114900 Sobic005G155001 Sobic005G155001 Sobic001G435800--Sobic005G155001 Sobic002G314950 Sobic002G314950 Sobic001G435800--Sobic002G314950 Sobic008G096900 Sobic008G096900 Sobic001G435800--Sobic008G096900 Sobic008G185000 Sobic008G185000 Sobic001G435800--Sobic008G185000 Sobic010G257300 Sobic010G257300 Sobic001G435800--Sobic010G257300 Sobic010G220100 Sobic010G220100 Sobic001G435800--Sobic010G220100 Sobic010G021401--Sobic005G155001 Sobic010G021401--Sobic009G114900 Sobic009G004500 Sobic009G004500 Sobic010G021401--Sobic009G004500 Sobic001G483200 Sobic001G483200 Sobic010G021401--Sobic001G483200 Sobic001G527900 Sobic001G527900 Sobic010G021401--Sobic001G527900 Sobic007G090406 Sobic007G090406 Sobic010G021401--Sobic007G090406 Sobic002G252700 Sobic002G252700 Sobic010G021401--Sobic002G252700 Sobic010G021401--Sobic008G185000 Sobic008G192800 Sobic008G192800 Sobic010G021401--Sobic008G192800 Sobic001G068901 Sobic001G068901 Sobic009G072400--Sobic001G068901 Sobic009G072400--Sobic010G257300 Sobic006G093400 Sobic006G093400 Sobic009G072400--Sobic006G093400 Sobic004G012100 Sobic004G012100 Sobic009G072400--Sobic004G012100 Sobic001G537600 Sobic001G537600 Sobic009G072400--Sobic001G537600 Sobic010G242100 Sobic010G242100 Sobic009G072400--Sobic010G242100 Sobic009G072400--Sobic008G096900 Sobic010G253700 Sobic010G253700 Sobic009G072400--Sobic010G253700 Sobic009G072400--Sobic001G435800 Sobic009G114900--Sobic005G155001 Sobic009G114900--Sobic010G021401 Sobic009G114900--Sobic007G090406 Sobic009G114900--Sobic002G252700 Sobic009G114900--Sobic009G004500 Sobic009G114900--Sobic006G093400 Sobic009G114900--Sobic008G192800 Sobic009G114900--Sobic001G527900 Sobic009G114900--Sobic001G483200 Sobic005G155001--Sobic001G483200 Sobic005G155001--Sobic009G114900 Sobic005G155001--Sobic009G004500 Sobic007G017300 Sobic007G017300 Sobic005G155001--Sobic007G017300 Sobic005G155001--Sobic010G021401 Sobic005G155001--Sobic001G527900 Sobic001G368000 Sobic001G368000 Sobic005G155001--Sobic001G368000 Sobic005G155001--Sobic008G185000 Sobic005G155001--Sobic007G090406 Sobic002G314950--Sobic001G527900 Sobic006G232300 Sobic006G232300 Sobic002G314950--Sobic006G232300 Sobic002G314950--Sobic005G155001 Sobic002G314950--Sobic010G253700 Sobic002G314950--Sobic001G483200 Sobic002G314950--Sobic006G093400 Sobic002G314950--Sobic009G114900 Sobic009G004300 Sobic009G004300 Sobic002G314950--Sobic009G004300 Sobic007G200200 Sobic007G200200 Sobic002G314950--Sobic007G200200 Sobic006G037000 Sobic006G037000 Sobic008G096900--Sobic006G037000 Sobic007G174100 Sobic007G174100 Sobic008G096900--Sobic007G174100 Sobic008G096900--Sobic010G257300 Sobic008G096900--Sobic001G537600 Sobic005G076100 Sobic005G076100 Sobic008G096900--Sobic005G076100 Sobic008G096900--Sobic004G012100 Sobic008G096900--Sobic010G253700 Sobic009G031300 Sobic009G031300 Sobic008G096900--Sobic009G031300 Sobic002G326200 Sobic002G326200 Sobic008G096900--Sobic002G326200 Sobic008G185000--Sobic005G155001 Sobic008G185000--Sobic009G004500 Sobic008G185000--Sobic001G483200 Sobic001G490600 Sobic001G490600 Sobic008G185000--Sobic001G490600 Sobic008G185000--Sobic010G021401 Sobic008G185000--Sobic001G368000 Sobic008G185000--Sobic007G017300 Sobic008G185000--Sobic009G114900 Sobic008G185000--Sobic002G252700 Sobic010G257300--Sobic006G093400 Sobic010G257300--Sobic004G012100 Sobic009G258150 Sobic009G258150 Sobic010G257300--Sobic009G258150 Sobic010G257300--Sobic001G068901 Sobic010G257300--Sobic010G253700 Sobic010G257300--Sobic001G537600 Sobic010G257300--Sobic009G072400 Sobic010G257300--Sobic008G096900 Sobic003G379500 Sobic003G379500 Sobic010G257300--Sobic003G379500 Sobic010G220100--Sobic008G185000 Sobic001G341900 Sobic001G341900 Sobic010G220100--Sobic001G341900 Sobic010G220100--Sobic001G435800 Sobic010G220100--Sobic002G252700 Sobic010G220100--Sobic009G114900 Sobic004G337700 Sobic004G337700 Sobic010G220100--Sobic004G337700 Sobic010G220100--Sobic005G155001 Sobic007G061500 Sobic007G061500 Sobic010G220100--Sobic007G061500 Sobic007G213500 Sobic007G213500 Sobic010G220100--Sobic007G213500
Octagon: transcription factors


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