Gene annotation
Transcriptome id Sobic.010G220100.1
Synonym Sb10g026560
Functional annotation cell cycle control protein, putative, expressed
UniProt C5Z7M2
Pfam PF03381
Panther DB PTHR10926 PTHR10926:SF30
NCBI CDD KOG2952; Cell cycle control protein
KEGG Orthology -
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT1G54320 : LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein
RAP-DB (Rice) LOC_Os06g45430.1 : cell cycle control protein, putative, expressed
MaizeGDB (Corn) Zm00025a019110 , Zm00025a051741 , Zm00025a041970 , Zm00025a034782
Brachypodium KQJ93571
Barley HORVU0Hr1G022300.4 , HORVU0Hr1G022300.6 , HORVU0Hr1G022300.1 , HORVU0Hr1G022300.3 , HORVU0Hr1G022300.5 , HORVU0Hr1G022300.7 , HORVU0Hr1G022300.2
Wheat TraesCS7D02G469100 , TraesCS5A02G519200 , TraesCS7B02G384400 , TraesCS4D02G345100 , TraesCS7A02G482200
Populus PNS96807 , PNS96806


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cDNA sequences
Sobic.010G220100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G185000 - -
2 Sobic.001G341900 domain of unknown function domain containing protein, expressed -
3 Sobic.001G435800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calcium-binding EF hand family protein, putative, expressed -
4 Sobic.002G252700 vignain precursor, putative, expressed -
5 Sobic.009G114900 - -
6 Sobic.004G337700 expressed protein -
7 Sobic.005G155001 - -
8 Sobic.007G061500 double-strand break repair protein MRE11, putative, expressed K10865: double-strand break repair protein MRE11
9 Sobic.007G213500 expressed protein -
10 Sobic.004G314100 GS9(Ortholog in rice:Zhao et al.(2018))(PubMedID : 31659890)@expressed protein -
11 Sobic.009G004500 expressed protein -
12 Sobic.001G368000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@annexin, putative, expressed -
13 Sobic.003G093500 protein binding protein, putative, expressed -
14 Sobic.006G093400 potassium channel SKOR, putative, expressed -
15 Sobic.010G021401 - -
16 Sobic.007G017300 endoglucanase, putative, expressed -
17 Sobic.010G060701 - K07964: heparanase
18 Sobic.001G191400 zinc finger C3HC4 type family protein, putative, expressed K10695: E3 ubiquitin-protein ligase RNF1/2
19 Sobic.001G028500 expressed protein -
20 Sobic.001G483200 ataxin-2 C-terminal region family protein, expressed -


Gene co-expression network
sample Sobic010G220100 Sobic010G220100 Sobic008G185000 Sobic008G185000 Sobic010G220100--Sobic008G185000 Sobic001G341900 Sobic001G341900 Sobic010G220100--Sobic001G341900 Sobic001G435800 Sobic001G435800 Sobic010G220100--Sobic001G435800 Sobic002G252700 Sobic002G252700 Sobic010G220100--Sobic002G252700 Sobic009G114900 Sobic009G114900 Sobic010G220100--Sobic009G114900 Sobic004G337700 Sobic004G337700 Sobic010G220100--Sobic004G337700 Sobic005G155001 Sobic005G155001 Sobic010G220100--Sobic005G155001 Sobic007G061500 Sobic007G061500 Sobic010G220100--Sobic007G061500 Sobic007G213500 Sobic007G213500 Sobic010G220100--Sobic007G213500 Sobic008G185000--Sobic005G155001 Sobic009G004500 Sobic009G004500 Sobic008G185000--Sobic009G004500 Sobic001G483200 Sobic001G483200 Sobic008G185000--Sobic001G483200 Sobic001G490600 Sobic001G490600 Sobic008G185000--Sobic001G490600 Sobic010G021401 Sobic010G021401 Sobic008G185000--Sobic010G021401 Sobic001G368000 Sobic001G368000 Sobic008G185000--Sobic001G368000 Sobic007G017300 Sobic007G017300 Sobic008G185000--Sobic007G017300 Sobic008G185000--Sobic009G114900 Sobic008G185000--Sobic002G252700 Sobic003G093500 Sobic003G093500 Sobic001G341900--Sobic003G093500 Sobic001G341900--Sobic007G061500 Sobic001G341900--Sobic009G004500 Sobic004G224100 Sobic004G224100 Sobic001G341900--Sobic004G224100 Sobic001G341900--Sobic004G337700 Sobic008G192800 Sobic008G192800 Sobic001G341900--Sobic008G192800 Sobic009G045100 Sobic009G045100 Sobic001G341900--Sobic009G045100 Sobic001G341900--Sobic001G368000 Sobic001G341900--Sobic009G114900 Sobic001G435800--Sobic010G021401 Sobic009G072400 Sobic009G072400 Sobic001G435800--Sobic009G072400 Sobic001G435800--Sobic009G114900 Sobic001G435800--Sobic005G155001 Sobic002G314950 Sobic002G314950 Sobic001G435800--Sobic002G314950 Sobic008G096900 Sobic008G096900 Sobic001G435800--Sobic008G096900 Sobic001G435800--Sobic008G185000 Sobic010G257300 Sobic010G257300 Sobic001G435800--Sobic010G257300 Sobic001G435800--Sobic010G220100 Sobic002G252700--Sobic009G114900 Sobic002G252700--Sobic010G021401 Sobic006G093400 Sobic006G093400 Sobic002G252700--Sobic006G093400 Sobic002G252700--Sobic005G155001 Sobic002G252700--Sobic008G185000 Sobic002G252700--Sobic008G192800 Sobic002G252700--Sobic009G004500 Sobic002G252700--Sobic008G096900 Sobic002G252700--Sobic010G257300 Sobic009G114900--Sobic005G155001 Sobic009G114900--Sobic010G021401 Sobic007G090406 Sobic007G090406 Sobic009G114900--Sobic007G090406 Sobic009G114900--Sobic002G252700 Sobic009G114900--Sobic009G004500 Sobic009G114900--Sobic006G093400 Sobic009G114900--Sobic008G192800 Sobic001G527900 Sobic001G527900 Sobic009G114900--Sobic001G527900 Sobic009G114900--Sobic001G483200 Sobic004G337700--Sobic003G093500 Sobic004G337700--Sobic001G341900 Sobic002G006001 Sobic002G006001 Sobic004G337700--Sobic002G006001 Sobic003G106100 Sobic003G106100 Sobic004G337700--Sobic003G106100 Sobic004G314100 Sobic004G314100 Sobic004G337700--Sobic004G314100 Sobic001G191400 Sobic001G191400 Sobic004G337700--Sobic001G191400 Sobic001G060200 Sobic001G060200 Sobic004G337700--Sobic001G060200 Sobic004G337700--Sobic005G155001 Sobic004G337700--Sobic007G061500 Sobic005G155001--Sobic001G483200 Sobic005G155001--Sobic009G114900 Sobic005G155001--Sobic009G004500 Sobic005G155001--Sobic007G017300 Sobic005G155001--Sobic010G021401 Sobic005G155001--Sobic001G527900 Sobic005G155001--Sobic001G368000 Sobic005G155001--Sobic008G185000 Sobic005G155001--Sobic007G090406 Sobic004G231501 Sobic004G231501 Sobic007G061500--Sobic004G231501 Sobic001G028500 Sobic001G028500 Sobic007G061500--Sobic001G028500 Sobic007G061500--Sobic004G314100 Sobic007G061500--Sobic009G004500 Sobic007G061500--Sobic007G017300 Sobic007G061500--Sobic001G368000 Sobic007G061500--Sobic003G093500 Sobic007G061500--Sobic003G106100 Sobic007G061500--Sobic001G483200 Sobic004G026000 Sobic004G026000 Sobic007G213500--Sobic004G026000 Sobic006G121200 Sobic006G121200 Sobic007G213500--Sobic006G121200 Sobic007G213500--Sobic004G314100 Sobic007G213500--Sobic007G017300 Sobic007G213500--Sobic001G483200 Sobic007G213500--Sobic001G368000 Sobic007G213500--Sobic003G106100 Sobic007G213500--Sobic007G061500 Sobic001G104100 Sobic001G104100 Sobic007G213500--Sobic001G104100
Octagon: transcription factors


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