Gene annotation
Transcriptome id Sobic.005G195000.3,Sobic.005G195000.1
Synonym Sb05g025190
Functional annotation RGH1A, putative, expressed
UniProt Q9XEQ9 , A0A1B6PTJ3
Pfam PF00931
Panther DB PTHR23155 PTHR23155:SF531
NCBI CDD KOG4658; Apoptotic ATPase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G46530 : NB-ARC domain-containing disease resistance protein
RAP-DB (Rice) LOC_Os12g37770.1 : RGH1A, putative, expressed
MaizeGDB (Corn) Zm00025a021945
Brachypodium KQJ87671
Barley HORVU3Hr1G005090.1
Wheat TraesCS7A02G419800 , TraesCS7D02G412600 , TraesCS7D02G412600 , TraesCS5A02G380700 , TraesCS5D02G390500 , TraesCS5B02G384300 , TraesCS7B02G320600
Populus -


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cDNA sequences
Sobic.005G195000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G136900 transferase family protein, putative, expressed -
2 Sobic.002G068500 expressed protein -
3 Sobic.004G327500 hydrolase, NUDIX family, domain containing protein, expressed -
4 Sobic.004G225450 - -
5 Sobic.008G190700 pentatricopeptide, putative, expressed -
6 Sobic.009G225300 - -
7 Sobic.010G036000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.003G179100 protein binding protein, putative, expressed K12821: PRPF40, pre-mRNA-processing factor 40
9 Sobic.009G083100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.003G309600 wax synthase, putative, expressed -
11 Sobic.007G131900 expressed protein -
12 Sobic.001G410800 OsTOP6A3 - Topoisomerase 6 subunit A homolog 3, expressed K10878: meiotic recombination protein SPO11
13 Sobic.001G537600 expressed protein -
14 Sobic.009G198400 protein kinase domain containing protein, expressed K04730: interleukin-1 receptor-associated kinase 1
15 Sobic.001G206800 - -
16 Sobic.005G002500 beta,beta-carotene 9,10-dioxygenase, putative, expressed K17913: carlactone synthase / all-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase
17 Sobic.001G168000 OsFBD13 - F-box and FBD domain containing protein, expressed -
18 Sobic.001G009200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
19 Sobic.002G218200 protein kinase domain containing protein, expressed -
20 Sobic.005G169800 GTPase of unknown function domain containing protein, putative, expressed K03665: GTPase


Gene co-expression network
sample Sobic005G195000 Sobic005G195000 Sobic006G136900 Sobic006G136900 Sobic005G195000--Sobic006G136900 Sobic002G068500 Sobic002G068500 Sobic005G195000--Sobic002G068500 Sobic004G327500 Sobic004G327500 Sobic005G195000--Sobic004G327500 Sobic004G225450 Sobic004G225450 Sobic005G195000--Sobic004G225450 Sobic008G190700 Sobic008G190700 Sobic005G195000--Sobic008G190700 Sobic009G225300 Sobic009G225300 Sobic005G195000--Sobic009G225300 Sobic010G036000 Sobic010G036000 Sobic005G195000--Sobic010G036000 Sobic003G179100 Sobic003G179100 Sobic005G195000--Sobic003G179100 Sobic009G083100 Sobic009G083100 Sobic005G195000--Sobic009G083100 Sobic003G309600 Sobic003G309600 Sobic006G136900--Sobic003G309600 Sobic001G308450 Sobic001G308450 Sobic006G136900--Sobic001G308450 Sobic004G199000 Sobic004G199000 Sobic006G136900--Sobic004G199000 Sobic009G004000 Sobic009G004000 Sobic006G136900--Sobic009G004000 Sobic010G197400 Sobic010G197400 Sobic006G136900--Sobic010G197400 Sobic001G261553 Sobic001G261553 Sobic006G136900--Sobic001G261553 Sobic002G003900 Sobic002G003900 Sobic006G136900--Sobic002G003900 Sobic009G249301 Sobic009G249301 Sobic006G136900--Sobic009G249301 Sobic008G150150 Sobic008G150150 Sobic006G136900--Sobic008G150150 Sobic002G068500--Sobic009G225300 Sobic002G068500--Sobic004G225450 Sobic001G537600 Sobic001G537600 Sobic002G068500--Sobic001G537600 Sobic002G068500--Sobic001G308450 Sobic010G242100 Sobic010G242100 Sobic002G068500--Sobic010G242100 Sobic001G410800 Sobic001G410800 Sobic002G068500--Sobic001G410800 Sobic006G146400 Sobic006G146400 Sobic002G068500--Sobic006G146400 Sobic010G106400 Sobic010G106400 Sobic002G068500--Sobic010G106400 Sobic006G065200 Sobic006G065200 Sobic002G068500--Sobic006G065200 Sobic005G061400 Sobic005G061400 Sobic004G327500--Sobic005G061400 Sobic001G004000 Sobic001G004000 Sobic004G327500--Sobic001G004000 Sobic004G327500--Sobic003G179100 Sobic004G327500--Sobic001G410800 Sobic001G220200 Sobic001G220200 Sobic004G327500--Sobic001G220200 Sobic001G406901 Sobic001G406901 Sobic004G327500--Sobic001G406901 Sobic001G519300 Sobic001G519300 Sobic004G327500--Sobic001G519300 Sobic004G275500 Sobic004G275500 Sobic004G327500--Sobic004G275500 Sobic010G158766 Sobic010G158766 Sobic004G327500--Sobic010G158766 Sobic004G357066 Sobic004G357066 Sobic004G225450--Sobic004G357066 Sobic004G357033 Sobic004G357033 Sobic004G225450--Sobic004G357033 Sobic004G344301 Sobic004G344301 Sobic004G225450--Sobic004G344301 Sobic004G225450--Sobic001G220200 Sobic010G096801 Sobic010G096801 Sobic004G225450--Sobic010G096801 Sobic004G225450--Sobic001G410800 Sobic004G225450--Sobic001G261553 Sobic004G225450--Sobic009G225300 Sobic004G225450--Sobic010G158766 Sobic008G190700--Sobic002G068500 Sobic008G025800 Sobic008G025800 Sobic008G190700--Sobic008G025800 Sobic010G261300 Sobic010G261300 Sobic008G190700--Sobic010G261300 Sobic008G190700--Sobic009G225300 Sobic010G254801 Sobic010G254801 Sobic008G190700--Sobic010G254801 Sobic007G175701 Sobic007G175701 Sobic008G190700--Sobic007G175701 Sobic009G198400 Sobic009G198400 Sobic008G190700--Sobic009G198400 Sobic007G224600 Sobic007G224600 Sobic008G190700--Sobic007G224600 Sobic001G130900 Sobic001G130900 Sobic008G190700--Sobic001G130900 Sobic009G225300--Sobic001G220200 Sobic009G225300--Sobic007G224600 Sobic009G225300--Sobic010G158766 Sobic001G115900 Sobic001G115900 Sobic009G225300--Sobic001G115900 Sobic009G225300--Sobic009G198400 Sobic003G126400 Sobic003G126400 Sobic009G225300--Sobic003G126400 Sobic003G065001 Sobic003G065001 Sobic009G225300--Sobic003G065001 Sobic009G225300--Sobic004G225450 Sobic009G225300--Sobic004G357033 Sobic010G036000--Sobic003G179100 Sobic002G284901 Sobic002G284901 Sobic010G036000--Sobic002G284901 Sobic010G073300 Sobic010G073300 Sobic010G036000--Sobic010G073300 Sobic001G525000 Sobic001G525000 Sobic010G036000--Sobic001G525000 Sobic002G430200 Sobic002G430200 Sobic010G036000--Sobic002G430200 Sobic003G120400 Sobic003G120400 Sobic010G036000--Sobic003G120400 Sobic002G387100 Sobic002G387100 Sobic010G036000--Sobic002G387100 Sobic002G320900 Sobic002G320900 Sobic010G036000--Sobic002G320900 Sobic006G065700 Sobic006G065700 Sobic010G036000--Sobic006G065700 Sobic003G179100--Sobic010G073300 Sobic003G179100--Sobic002G284901 Sobic003G179100--Sobic002G320900 Sobic003G179100--Sobic003G120400 Sobic003G179100--Sobic001G525000 Sobic003G179100--Sobic006G065700 Sobic003G179100--Sobic002G430200 Sobic003G179100--Sobic002G387100 Sobic003G179100--Sobic001G519300 Sobic006G280900 Sobic006G280900 Sobic009G083100--Sobic006G280900 Sobic007G090406 Sobic007G090406 Sobic009G083100--Sobic007G090406 Sobic009G083100--Sobic006G146400 Sobic009G083100--Sobic001G537600 Sobic009G236000 Sobic009G236000 Sobic009G083100--Sobic009G236000 Sobic001G096800 Sobic001G096800 Sobic009G083100--Sobic001G096800 Sobic009G114900 Sobic009G114900 Sobic009G083100--Sobic009G114900 Sobic008G192800 Sobic008G192800 Sobic009G083100--Sobic008G192800 Sobic006G222650 Sobic006G222650 Sobic009G083100--Sobic006G222650
Octagon: transcription factors


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