Gene annotation
Transcriptome id Sobic.001G009200.1
Synonym Sb01g000900,Nuclear Factor Y, SbNF-YC1, NF-YC10
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
tentative name (PubMedID : 31536532)
histone-like transcription factor and archaeal histone, putative, expressed
UniProt A0A1B6QGR2
Pfam PF00808
Panther DB PTHR10252 PTHR10252:SF44
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G07980 : nuclear factor Y, subunit C10
RAP-DB (Rice) LOC_Os03g63530.1 : histone-like transcription factor and archaeal histone, putative, expressed
MaizeGDB (Corn) Zm00025a009078
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G543600 tetraspanin family protein, putative, expressed -
2 Sobic.004G011201 - K10143: RFWD2, E3 ubiquitin-protein ligase RFWD2
3 Sobic.009G174600 OsFBX407 - F-box domain containing protein, expressed -
4 Sobic.006G103601 - -
5 Sobic.006G065200 SAM domain family protein, expressed -
6 Sobic.007G119300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endoglucanase, putative, expressed -
7 Sobic.006G280900 zinc finger, C3HC4 type domain containing protein, expressed -
8 Sobic.004G302400 NAC domain containing protein, putative, expressed -
9 Sobic.007G165200 - -
10 Sobic.009G238200 transcription factor(PubMedID : 30367619)@WRKY19, expressed -
11 Sobic.010G106400 - -
12 Sobic.005G027032 - -
13 Sobic.010G005401 - -
14 Sobic.001G537600 expressed protein -
15 Sobic.002G065300 OsSub58 - Putative Subtilisin homologue, expressed -
16 Sobic.005G002500 beta,beta-carotene 9,10-dioxygenase, putative, expressed K17913: carlactone synthase / all-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase
17 Sobic.001G410800 OsTOP6A3 - Topoisomerase 6 subunit A homolog 3, expressed K10878: meiotic recombination protein SPO11
18 Sobic.004G357066 - -
19 Sobic.002G116300 poly synthetase 1, putative, expressed K10798: poly [ADP-ribose] polymerase 2/3/4
20 Sobic.002G285800 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR52 - Auxin-responsive SAUR gene family member, expressed -


Gene co-expression network
sample Sobic001G009200 Sobic001G009200 Sobic001G543600 Sobic001G543600 Sobic001G009200--Sobic001G543600 Sobic004G011201 Sobic004G011201 Sobic001G009200--Sobic004G011201 Sobic009G174600 Sobic009G174600 Sobic001G009200--Sobic009G174600 Sobic006G103601 Sobic006G103601 Sobic001G009200--Sobic006G103601 Sobic006G065200 Sobic006G065200 Sobic001G009200--Sobic006G065200 Sobic007G119300 Sobic007G119300 Sobic001G009200--Sobic007G119300 Sobic006G280900 Sobic006G280900 Sobic001G009200--Sobic006G280900 Sobic004G302400 Sobic004G302400 Sobic001G009200--Sobic004G302400 Sobic007G165200 Sobic007G165200 Sobic001G009200--Sobic007G165200 Sobic001G543600--Sobic009G174600 Sobic001G543600--Sobic004G302400 Sobic001G543600--Sobic006G103601 Sobic001G543600--Sobic006G280900 Sobic002G285800 Sobic002G285800 Sobic001G543600--Sobic002G285800 Sobic002G065300 Sobic002G065300 Sobic001G543600--Sobic002G065300 Sobic009G238200 Sobic009G238200 Sobic001G543600--Sobic009G238200 Sobic010G136601 Sobic010G136601 Sobic001G543600--Sobic010G136601 Sobic002G116300 Sobic002G116300 Sobic001G543600--Sobic002G116300 Sobic001G128900 Sobic001G128900 Sobic004G011201--Sobic001G128900 Sobic010G158766 Sobic010G158766 Sobic004G011201--Sobic010G158766 Sobic001G220200 Sobic001G220200 Sobic004G011201--Sobic001G220200 Sobic001G410800 Sobic001G410800 Sobic004G011201--Sobic001G410800 Sobic004G011201--Sobic009G238200 Sobic004G011201--Sobic009G174600 Sobic004G011201--Sobic001G009200 Sobic001G535601 Sobic001G535601 Sobic004G011201--Sobic001G535601 Sobic004G344301 Sobic004G344301 Sobic004G011201--Sobic004G344301 Sobic009G174600--Sobic004G302400 Sobic009G174600--Sobic002G065300 Sobic009G174600--Sobic002G116300 Sobic006G222650 Sobic006G222650 Sobic009G174600--Sobic006G222650 Sobic009G174600--Sobic001G543600 Sobic009G174600--Sobic002G285800 Sobic009G174600--Sobic006G103601 Sobic010G035300 Sobic010G035300 Sobic009G174600--Sobic010G035300 Sobic009G174600--Sobic009G238200 Sobic006G103601--Sobic009G238200 Sobic006G103601--Sobic002G285800 Sobic010G106400 Sobic010G106400 Sobic006G103601--Sobic010G106400 Sobic006G103601--Sobic002G116300 Sobic006G146400 Sobic006G146400 Sobic006G103601--Sobic006G146400 Sobic006G103601--Sobic009G174600 Sobic001G537600 Sobic001G537600 Sobic006G103601--Sobic001G537600 Sobic003G379500 Sobic003G379500 Sobic006G103601--Sobic003G379500 Sobic009G258150 Sobic009G258150 Sobic006G103601--Sobic009G258150 Sobic006G065200--Sobic010G106400 Sobic006G065200--Sobic001G537600 Sobic006G065200--Sobic007G165200 Sobic006G065200--Sobic006G280900 Sobic001G068901 Sobic001G068901 Sobic006G065200--Sobic001G068901 Sobic006G065200--Sobic006G103601 Sobic001G308450 Sobic001G308450 Sobic006G065200--Sobic001G308450 Sobic006G065200--Sobic001G543600 Sobic006G065200--Sobic009G238200 Sobic002G426650 Sobic002G426650 Sobic007G119300--Sobic002G426650 Sobic008G112400 Sobic008G112400 Sobic007G119300--Sobic008G112400 Sobic005G001600 Sobic005G001600 Sobic007G119300--Sobic005G001600 Sobic007G119300--Sobic002G065300 Sobic007G119300--Sobic006G280900 Sobic007G119300--Sobic004G302400 Sobic007G119300--Sobic006G222650 Sobic007G119300--Sobic009G174600 Sobic004G302550 Sobic004G302550 Sobic007G119300--Sobic004G302550 Sobic006G280900--Sobic006G146400 Sobic006G280900--Sobic006G222650 Sobic006G280900--Sobic004G302400 Sobic006G280900--Sobic001G537600 Sobic009G083100 Sobic009G083100 Sobic006G280900--Sobic009G083100 Sobic006G280900--Sobic009G238200 Sobic006G280900--Sobic002G116300 Sobic006G280900--Sobic010G106400 Sobic006G280900--Sobic010G035300 Sobic004G302400--Sobic006G222650 Sobic004G302400--Sobic009G174600 Sobic004G302400--Sobic010G035300 Sobic004G302400--Sobic002G116300 Sobic006G162300 Sobic006G162300 Sobic004G302400--Sobic006G162300 Sobic004G302400--Sobic002G065300 Sobic004G302400--Sobic009G238200 Sobic004G302400--Sobic006G146400 Sobic004G302400--Sobic006G280900 Sobic001G456650 Sobic001G456650 Sobic007G165200--Sobic001G456650 Sobic007G165200--Sobic006G065200 Sobic007G165200--Sobic010G106400 Sobic007G165200--Sobic001G068901 Sobic007G165200--Sobic001G537600 Sobic007G165200--Sobic001G308450 Sobic002G003900 Sobic002G003900 Sobic007G165200--Sobic002G003900 Sobic007G165200--Sobic006G280900 Sobic005G027032 Sobic005G027032 Sobic007G165200--Sobic005G027032
Octagon: transcription factors


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