Gene annotation
Transcriptome id Sobic.010G005401.1
Synonym -
Functional annotation -
UniProt C5Z268
Pfam PF00892
Panther DB PTHR31218 PTHR31218:SF66
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0016020membrane


Orthologs (automatic annotation)
TAIR AT3G30340 : nodulin MtN21 /EamA-like transporter family protein
RAP-DB (Rice) LOC_Os06g01840.1 : nodulin, putative, expressed
MaizeGDB (Corn) Zm00025a050304
Brachypodium KQK20032
Barley HORVU7Hr1G019700.4 , HORVU7Hr1G019700.5 , HORVU7Hr1G019700.6 , HORVU7Hr1G019700.7 , HORVU7Hr1G019700.1 , HORVU7Hr1G019700.2 , HORVU7Hr1G019700.3 , HORVU7Hr1G019700.8 , HORVU7Hr1G002200.1 , HORVU7Hr1G002200.2
Wheat TraesCS4B02G086600 , TraesCS7D02G082900 , TraesCS4A02G472400 , TraesCS7D02G016700 , TraesCS4A02G386700 , TraesCS7A02G020400 , TraesCS7A02G087800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G224000 - -
2 Sobic.001G543600 tetraspanin family protein, putative, expressed -
3 Sobic.001G535601 - -
4 Sobic.002G065300 OsSub58 - Putative Subtilisin homologue, expressed -
5 Sobic.001G009200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
6 Sobic.009G174600 OsFBX407 - F-box domain containing protein, expressed -
7 Sobic.004G302400 NAC domain containing protein, putative, expressed -
8 Sobic.007G119300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endoglucanase, putative, expressed -
9 Sobic.010G181000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
10 Sobic.006G103601 - -
11 Sobic.010G136601 - -
12 Sobic.010G106400 - -
13 Sobic.006G065200 SAM domain family protein, expressed -
14 Sobic.002G116300 poly synthetase 1, putative, expressed K10798: poly [ADP-ribose] polymerase 2/3/4
15 Sobic.006G280900 zinc finger, C3HC4 type domain containing protein, expressed -
16 Sobic.001G410800 OsTOP6A3 - Topoisomerase 6 subunit A homolog 3, expressed K10878: meiotic recombination protein SPO11
17 Sobic.001G300750 - -
18 Sobic.002G285800 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR52 - Auxin-responsive SAUR gene family member, expressed -
19 Sobic.008G112400 - -
20 Sobic.005G002500 beta,beta-carotene 9,10-dioxygenase, putative, expressed K17913: carlactone synthase / all-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase


Gene co-expression network
sample Sobic010G005401 Sobic010G005401 Sobic003G224000 Sobic003G224000 Sobic010G005401--Sobic003G224000 Sobic001G543600 Sobic001G543600 Sobic010G005401--Sobic001G543600 Sobic001G535601 Sobic001G535601 Sobic010G005401--Sobic001G535601 Sobic002G065300 Sobic002G065300 Sobic010G005401--Sobic002G065300 Sobic001G009200 Sobic001G009200 Sobic010G005401--Sobic001G009200 Sobic009G174600 Sobic009G174600 Sobic010G005401--Sobic009G174600 Sobic004G302400 Sobic004G302400 Sobic010G005401--Sobic004G302400 Sobic007G119300 Sobic007G119300 Sobic010G005401--Sobic007G119300 Sobic010G181000 Sobic010G181000 Sobic010G005401--Sobic010G181000 Sobic003G224000--Sobic001G535601 Sobic002G218200 Sobic002G218200 Sobic003G224000--Sobic002G218200 Sobic007G070600 Sobic007G070600 Sobic003G224000--Sobic007G070600 Sobic001G410800 Sobic001G410800 Sobic003G224000--Sobic001G410800 Sobic003G224000--Sobic010G005401 Sobic006G065200 Sobic006G065200 Sobic003G224000--Sobic006G065200 Sobic010G136601 Sobic010G136601 Sobic003G224000--Sobic010G136601 Sobic001G300750 Sobic001G300750 Sobic003G224000--Sobic001G300750 Sobic003G224000--Sobic001G543600 Sobic001G543600--Sobic009G174600 Sobic001G543600--Sobic004G302400 Sobic006G103601 Sobic006G103601 Sobic001G543600--Sobic006G103601 Sobic006G280900 Sobic006G280900 Sobic001G543600--Sobic006G280900 Sobic002G285800 Sobic002G285800 Sobic001G543600--Sobic002G285800 Sobic001G543600--Sobic002G065300 Sobic009G238200 Sobic009G238200 Sobic001G543600--Sobic009G238200 Sobic001G543600--Sobic010G136601 Sobic002G116300 Sobic002G116300 Sobic001G543600--Sobic002G116300 Sobic001G535601--Sobic001G410800 Sobic001G535601--Sobic002G218200 Sobic001G139600 Sobic001G139600 Sobic001G535601--Sobic001G139600 Sobic001G535601--Sobic003G224000 Sobic010G158100 Sobic010G158100 Sobic001G535601--Sobic010G158100 Sobic001G220200 Sobic001G220200 Sobic001G535601--Sobic001G220200 Sobic001G535601--Sobic010G136601 Sobic001G223400 Sobic001G223400 Sobic001G535601--Sobic001G223400 Sobic002G140100 Sobic002G140100 Sobic001G535601--Sobic002G140100 Sobic002G065300--Sobic009G174600 Sobic002G065300--Sobic004G302400 Sobic006G222650 Sobic006G222650 Sobic002G065300--Sobic006G222650 Sobic002G065300--Sobic002G116300 Sobic004G302550 Sobic004G302550 Sobic002G065300--Sobic004G302550 Sobic008G112400 Sobic008G112400 Sobic002G065300--Sobic008G112400 Sobic004G269500 Sobic004G269500 Sobic002G065300--Sobic004G269500 Sobic004G177400 Sobic004G177400 Sobic002G065300--Sobic004G177400 Sobic002G065300--Sobic001G543600 Sobic001G009200--Sobic001G543600 Sobic004G011201 Sobic004G011201 Sobic001G009200--Sobic004G011201 Sobic001G009200--Sobic009G174600 Sobic001G009200--Sobic006G103601 Sobic001G009200--Sobic006G065200 Sobic001G009200--Sobic007G119300 Sobic001G009200--Sobic006G280900 Sobic001G009200--Sobic004G302400 Sobic007G165200 Sobic007G165200 Sobic001G009200--Sobic007G165200 Sobic009G174600--Sobic004G302400 Sobic009G174600--Sobic002G065300 Sobic009G174600--Sobic002G116300 Sobic009G174600--Sobic006G222650 Sobic009G174600--Sobic001G543600 Sobic009G174600--Sobic002G285800 Sobic009G174600--Sobic006G103601 Sobic010G035300 Sobic010G035300 Sobic009G174600--Sobic010G035300 Sobic009G174600--Sobic009G238200 Sobic004G302400--Sobic006G222650 Sobic004G302400--Sobic009G174600 Sobic004G302400--Sobic010G035300 Sobic004G302400--Sobic002G116300 Sobic006G162300 Sobic006G162300 Sobic004G302400--Sobic006G162300 Sobic004G302400--Sobic002G065300 Sobic004G302400--Sobic009G238200 Sobic006G146400 Sobic006G146400 Sobic004G302400--Sobic006G146400 Sobic004G302400--Sobic006G280900 Sobic002G426650 Sobic002G426650 Sobic007G119300--Sobic002G426650 Sobic007G119300--Sobic008G112400 Sobic005G001600 Sobic005G001600 Sobic007G119300--Sobic005G001600 Sobic007G119300--Sobic002G065300 Sobic007G119300--Sobic006G280900 Sobic007G119300--Sobic004G302400 Sobic007G119300--Sobic006G222650 Sobic007G119300--Sobic009G174600 Sobic007G119300--Sobic004G302550 Sobic010G181000--Sobic001G543600 Sobic010G181000--Sobic006G065200 Sobic010G181000--Sobic004G302400 Sobic010G181000--Sobic006G280900 Sobic010G181000--Sobic006G103601 Sobic010G181000--Sobic009G174600 Sobic010G181000--Sobic007G119300 Sobic010G181000--Sobic002G116300 Sobic010G181000--Sobic002G065300
Octagon: transcription factors


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