Gene annotation
Transcriptome id Sobic.003G224000.1
Synonym Sb03g028230
Functional annotation -
UniProt C5XR48
Pfam -
Panther DB PTHR33978 PTHR33978:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os06g33390.1 : avr9/Cf-9 rapidly elicited protein 194, putative, expressed
MaizeGDB (Corn) Zm00025a056269 , Zm00025a028383
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G535601 - -
2 Sobic.002G218200 protein kinase domain containing protein, expressed -
3 Sobic.007G070600 purine permease, putative, expressed -
4 Sobic.001G410800 OsTOP6A3 - Topoisomerase 6 subunit A homolog 3, expressed K10878: meiotic recombination protein SPO11
5 Sobic.010G005401 - -
6 Sobic.006G065200 SAM domain family protein, expressed -
7 Sobic.010G136601 - -
8 Sobic.001G300750 - -
9 Sobic.001G543600 tetraspanin family protein, putative, expressed -
10 Sobic.010G106400 - -
11 Sobic.004G302400 NAC domain containing protein, putative, expressed -
12 Sobic.001G223400 glucosyltransferase, putative, expressed -
13 Sobic.005G002500 beta,beta-carotene 9,10-dioxygenase, putative, expressed K17913: carlactone synthase / all-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase
14 Sobic.010G181000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
15 Sobic.009G174600 OsFBX407 - F-box domain containing protein, expressed -
16 Sobic.001G139600 - -
17 Sobic.010G158100 zinc finger, C3HC4 type domain containing protein, expressed -
18 Sobic.002G285800 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR52 - Auxin-responsive SAUR gene family member, expressed -
19 Sobic.002G065300 OsSub58 - Putative Subtilisin homologue, expressed -
20 Sobic.006G103601 - -


Gene co-expression network
sample Sobic003G224000 Sobic003G224000 Sobic001G535601 Sobic001G535601 Sobic003G224000--Sobic001G535601 Sobic002G218200 Sobic002G218200 Sobic003G224000--Sobic002G218200 Sobic007G070600 Sobic007G070600 Sobic003G224000--Sobic007G070600 Sobic001G410800 Sobic001G410800 Sobic003G224000--Sobic001G410800 Sobic010G005401 Sobic010G005401 Sobic003G224000--Sobic010G005401 Sobic006G065200 Sobic006G065200 Sobic003G224000--Sobic006G065200 Sobic010G136601 Sobic010G136601 Sobic003G224000--Sobic010G136601 Sobic001G300750 Sobic001G300750 Sobic003G224000--Sobic001G300750 Sobic001G543600 Sobic001G543600 Sobic003G224000--Sobic001G543600 Sobic001G535601--Sobic001G410800 Sobic001G535601--Sobic002G218200 Sobic001G139600 Sobic001G139600 Sobic001G535601--Sobic001G139600 Sobic001G535601--Sobic003G224000 Sobic010G158100 Sobic010G158100 Sobic001G535601--Sobic010G158100 Sobic001G220200 Sobic001G220200 Sobic001G535601--Sobic001G220200 Sobic001G535601--Sobic010G136601 Sobic001G223400 Sobic001G223400 Sobic001G535601--Sobic001G223400 Sobic002G140100 Sobic002G140100 Sobic001G535601--Sobic002G140100 Sobic002G218200--Sobic001G139600 Sobic002G218200--Sobic001G410800 Sobic002G218200--Sobic001G535601 Sobic002G218200--Sobic002G140100 Sobic005G232200 Sobic005G232200 Sobic002G218200--Sobic005G232200 Sobic002G218200--Sobic010G158100 Sobic010G096801 Sobic010G096801 Sobic002G218200--Sobic010G096801 Sobic004G357033 Sobic004G357033 Sobic002G218200--Sobic004G357033 Sobic006G227800 Sobic006G227800 Sobic002G218200--Sobic006G227800 Sobic007G070600--Sobic003G224000 Sobic007G070600--Sobic001G535601 Sobic001G378150 Sobic001G378150 Sobic007G070600--Sobic001G378150 Sobic005G008301 Sobic005G008301 Sobic007G070600--Sobic005G008301 Sobic001G062400 Sobic001G062400 Sobic007G070600--Sobic001G062400 Sobic003G013400 Sobic003G013400 Sobic007G070600--Sobic003G013400 Sobic007G070600--Sobic005G232200 Sobic007G070600--Sobic002G218200 Sobic007G070600--Sobic001G139600 Sobic001G410800--Sobic001G220200 Sobic001G410800--Sobic004G357033 Sobic001G410800--Sobic002G218200 Sobic001G410800--Sobic010G096801 Sobic001G410800--Sobic001G535601 Sobic001G410800--Sobic001G139600 Sobic010G158766 Sobic010G158766 Sobic001G410800--Sobic010G158766 Sobic001G410800--Sobic010G136601 Sobic001G410800--Sobic001G223400 Sobic010G005401--Sobic003G224000 Sobic010G005401--Sobic001G543600 Sobic010G005401--Sobic001G535601 Sobic002G065300 Sobic002G065300 Sobic010G005401--Sobic002G065300 Sobic001G009200 Sobic001G009200 Sobic010G005401--Sobic001G009200 Sobic009G174600 Sobic009G174600 Sobic010G005401--Sobic009G174600 Sobic004G302400 Sobic004G302400 Sobic010G005401--Sobic004G302400 Sobic007G119300 Sobic007G119300 Sobic010G005401--Sobic007G119300 Sobic010G181000 Sobic010G181000 Sobic010G005401--Sobic010G181000 Sobic010G106400 Sobic010G106400 Sobic006G065200--Sobic010G106400 Sobic001G537600 Sobic001G537600 Sobic006G065200--Sobic001G537600 Sobic007G165200 Sobic007G165200 Sobic006G065200--Sobic007G165200 Sobic006G280900 Sobic006G280900 Sobic006G065200--Sobic006G280900 Sobic001G068901 Sobic001G068901 Sobic006G065200--Sobic001G068901 Sobic006G103601 Sobic006G103601 Sobic006G065200--Sobic006G103601 Sobic001G308450 Sobic001G308450 Sobic006G065200--Sobic001G308450 Sobic006G065200--Sobic001G543600 Sobic009G238200 Sobic009G238200 Sobic006G065200--Sobic009G238200 Sobic010G136601--Sobic001G223400 Sobic002G285800 Sobic002G285800 Sobic010G136601--Sobic002G285800 Sobic001G460800 Sobic001G460800 Sobic010G136601--Sobic001G460800 Sobic003G427500 Sobic003G427500 Sobic010G136601--Sobic003G427500 Sobic010G136601--Sobic004G357033 Sobic002G320900 Sobic002G320900 Sobic010G136601--Sobic002G320900 Sobic003G167825 Sobic003G167825 Sobic010G136601--Sobic003G167825 Sobic006G065700 Sobic006G065700 Sobic010G136601--Sobic006G065700 Sobic007G093400 Sobic007G093400 Sobic010G136601--Sobic007G093400 Sobic001G300750--Sobic003G224000 Sobic008G120066 Sobic008G120066 Sobic001G300750--Sobic008G120066 Sobic001G344450 Sobic001G344450 Sobic001G300750--Sobic001G344450 Sobic001G300750--Sobic010G005401 Sobic001G541166 Sobic001G541166 Sobic001G300750--Sobic001G541166 Sobic009G250000 Sobic009G250000 Sobic001G300750--Sobic009G250000 Sobic001G300750--Sobic001G378150 Sobic001G163000 Sobic001G163000 Sobic001G300750--Sobic001G163000 Sobic001G300750--Sobic007G070600 Sobic001G543600--Sobic009G174600 Sobic001G543600--Sobic004G302400 Sobic001G543600--Sobic006G103601 Sobic001G543600--Sobic006G280900 Sobic001G543600--Sobic002G285800 Sobic001G543600--Sobic002G065300 Sobic001G543600--Sobic009G238200 Sobic001G543600--Sobic010G136601 Sobic002G116300 Sobic002G116300 Sobic001G543600--Sobic002G116300
Octagon: transcription factors


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