Gene annotation
Transcriptome id Sobic.006G065200.1
Synonym Sb06g015230
Functional annotation SAM domain family protein, expressed
UniProt C5YFR1
Pfam PF00536 PF02466
Panther DB PTHR14110 PTHR14110:SF11
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G24650 : Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein
RAP-DB (Rice) LOC_Os04g33220.1 : SAM domain family protein, expressed
MaizeGDB (Corn) Zm00025a011582 , Zm00025a031447
Brachypodium KQJ82433
Barley HORVU2Hr1G072010.3 , HORVU2Hr1G072010.2 , HORVU2Hr1G072010.1 , HORVU2Hr1G072010.4 , HORVU2Hr1G072010.5
Wheat TraesCS2D02G289200 , TraesCS2D02G289200 , TraesCS2B02G307600 , TraesCS2A02G291200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G106400 - -
2 Sobic.001G537600 expressed protein -
3 Sobic.007G165200 - -
4 Sobic.006G280900 zinc finger, C3HC4 type domain containing protein, expressed -
5 Sobic.001G068901 - -
6 Sobic.006G103601 - -
7 Sobic.001G308450 - -
8 Sobic.001G543600 tetraspanin family protein, putative, expressed -
9 Sobic.009G238200 transcription factor(PubMedID : 30367619)@WRKY19, expressed -
10 Sobic.009G083100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.006G146400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
12 Sobic.001G410800 OsTOP6A3 - Topoisomerase 6 subunit A homolog 3, expressed K10878: meiotic recombination protein SPO11
13 Sobic.010G181000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
14 Sobic.005G002500 beta,beta-carotene 9,10-dioxygenase, putative, expressed K17913: carlactone synthase / all-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase
15 Sobic.002G003900 - -
16 Sobic.002G068500 expressed protein -
17 Sobic.001G206800 - -
18 Sobic.010G096801 - -
19 Sobic.010G242100 cytochrome P450 domain containing protein, expressed -
20 Sobic.001G535601 - -


Gene co-expression network
sample Sobic006G065200 Sobic006G065200 Sobic010G106400 Sobic010G106400 Sobic006G065200--Sobic010G106400 Sobic001G537600 Sobic001G537600 Sobic006G065200--Sobic001G537600 Sobic007G165200 Sobic007G165200 Sobic006G065200--Sobic007G165200 Sobic006G280900 Sobic006G280900 Sobic006G065200--Sobic006G280900 Sobic001G068901 Sobic001G068901 Sobic006G065200--Sobic001G068901 Sobic006G103601 Sobic006G103601 Sobic006G065200--Sobic006G103601 Sobic001G308450 Sobic001G308450 Sobic006G065200--Sobic001G308450 Sobic001G543600 Sobic001G543600 Sobic006G065200--Sobic001G543600 Sobic009G238200 Sobic009G238200 Sobic006G065200--Sobic009G238200 Sobic010G106400--Sobic001G537600 Sobic010G106400--Sobic009G238200 Sobic010G106400--Sobic006G065200 Sobic010G106400--Sobic006G103601 Sobic010G106400--Sobic001G068901 Sobic009G258150 Sobic009G258150 Sobic010G106400--Sobic009G258150 Sobic010G106400--Sobic006G280900 Sobic004G012100 Sobic004G012100 Sobic010G106400--Sobic004G012100 Sobic006G146400 Sobic006G146400 Sobic010G106400--Sobic006G146400 Sobic001G537600--Sobic010G106400 Sobic001G537600--Sobic001G068901 Sobic001G537600--Sobic006G146400 Sobic001G537600--Sobic009G238200 Sobic001G537600--Sobic006G280900 Sobic001G537600--Sobic006G065200 Sobic010G257300 Sobic010G257300 Sobic001G537600--Sobic010G257300 Sobic001G537600--Sobic004G012100 Sobic001G537600--Sobic006G103601 Sobic001G456650 Sobic001G456650 Sobic007G165200--Sobic001G456650 Sobic007G165200--Sobic006G065200 Sobic007G165200--Sobic010G106400 Sobic007G165200--Sobic001G068901 Sobic007G165200--Sobic001G537600 Sobic007G165200--Sobic001G308450 Sobic002G003900 Sobic002G003900 Sobic007G165200--Sobic002G003900 Sobic007G165200--Sobic006G280900 Sobic005G027032 Sobic005G027032 Sobic007G165200--Sobic005G027032 Sobic006G280900--Sobic006G146400 Sobic006G222650 Sobic006G222650 Sobic006G280900--Sobic006G222650 Sobic004G302400 Sobic004G302400 Sobic006G280900--Sobic004G302400 Sobic006G280900--Sobic001G537600 Sobic009G083100 Sobic009G083100 Sobic006G280900--Sobic009G083100 Sobic006G280900--Sobic009G238200 Sobic002G116300 Sobic002G116300 Sobic006G280900--Sobic002G116300 Sobic006G280900--Sobic010G106400 Sobic010G035300 Sobic010G035300 Sobic006G280900--Sobic010G035300 Sobic001G068901--Sobic001G537600 Sobic010G242100 Sobic010G242100 Sobic001G068901--Sobic010G242100 Sobic006G093400 Sobic006G093400 Sobic001G068901--Sobic006G093400 Sobic009G072400 Sobic009G072400 Sobic001G068901--Sobic009G072400 Sobic001G068901--Sobic010G257300 Sobic010G253700 Sobic010G253700 Sobic001G068901--Sobic010G253700 Sobic001G068901--Sobic004G012100 Sobic001G068901--Sobic010G106400 Sobic001G068901--Sobic001G308450 Sobic006G103601--Sobic009G238200 Sobic002G285800 Sobic002G285800 Sobic006G103601--Sobic002G285800 Sobic006G103601--Sobic010G106400 Sobic006G103601--Sobic002G116300 Sobic006G103601--Sobic006G146400 Sobic009G174600 Sobic009G174600 Sobic006G103601--Sobic009G174600 Sobic006G103601--Sobic001G537600 Sobic003G379500 Sobic003G379500 Sobic006G103601--Sobic003G379500 Sobic006G103601--Sobic009G258150 Sobic001G308450--Sobic002G003900 Sobic001G308450--Sobic001G068901 Sobic009G225300 Sobic009G225300 Sobic001G308450--Sobic009G225300 Sobic001G308450--Sobic001G537600 Sobic001G308450--Sobic010G242100 Sobic001G308450--Sobic006G065200 Sobic010G197400 Sobic010G197400 Sobic001G308450--Sobic010G197400 Sobic002G068500 Sobic002G068500 Sobic001G308450--Sobic002G068500 Sobic010G096801 Sobic010G096801 Sobic001G308450--Sobic010G096801 Sobic001G543600--Sobic009G174600 Sobic001G543600--Sobic004G302400 Sobic001G543600--Sobic006G103601 Sobic001G543600--Sobic006G280900 Sobic001G543600--Sobic002G285800 Sobic002G065300 Sobic002G065300 Sobic001G543600--Sobic002G065300 Sobic001G543600--Sobic009G238200 Sobic010G136601 Sobic010G136601 Sobic001G543600--Sobic010G136601 Sobic001G543600--Sobic002G116300 Sobic009G238200--Sobic002G116300 Sobic001G115900 Sobic001G115900 Sobic009G238200--Sobic001G115900 Sobic003G167825 Sobic003G167825 Sobic009G238200--Sobic003G167825 Sobic009G238200--Sobic006G103601 Sobic006G069050 Sobic006G069050 Sobic009G238200--Sobic006G069050 Sobic009G238200--Sobic009G258150 Sobic009G238200--Sobic006G146400 Sobic009G085600 Sobic009G085600 Sobic009G238200--Sobic009G085600 Sobic003G126400 Sobic003G126400 Sobic009G238200--Sobic003G126400
Octagon: transcription factors


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