Gene annotation
Transcriptome id Sobic.010G181000.1,Sobic.010G181000.3,Sobic.010G181000.7,Sobic.010G181000.5,Sobic.010G181000.4,Sobic.010G181000.6
Synonym Sb10g023240
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt A0A194YJX5 , C5Z5J7
Pfam PF13812 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF311
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G31430 : Pentatricopeptide repeat (PPR-like) superfamily protein
RAP-DB (Rice) LOC_Os06g39650.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a042255 , Zm00025a039637
Brachypodium PNT75707 , PNT75708 , KQK17817
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G543600 tetraspanin family protein, putative, expressed -
2 Sobic.006G065200 SAM domain family protein, expressed -
3 Sobic.004G302400 NAC domain containing protein, putative, expressed -
4 Sobic.006G280900 zinc finger, C3HC4 type domain containing protein, expressed -
5 Sobic.006G103601 - -
6 Sobic.009G174600 OsFBX407 - F-box domain containing protein, expressed -
7 Sobic.007G119300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endoglucanase, putative, expressed -
8 Sobic.002G116300 poly synthetase 1, putative, expressed K10798: poly [ADP-ribose] polymerase 2/3/4
9 Sobic.002G065300 OsSub58 - Putative Subtilisin homologue, expressed -
10 Sobic.006G146400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
11 Sobic.006G222650 - -
12 Sobic.010G106400 - -
13 Sobic.008G112400 - -
14 Sobic.009G236000 GATA zinc finger domain containing protein, expressed -
15 Sobic.002G426650 - -
16 Sobic.001G537600 expressed protein -
17 Sobic.009G238200 transcription factor(PubMedID : 30367619)@WRKY19, expressed -
18 Sobic.005G001600 IBR domain containing protein, expressed -
19 Sobic.003G224000 - -
20 Sobic.009G083100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic010G181000 Sobic010G181000 Sobic001G543600 Sobic001G543600 Sobic010G181000--Sobic001G543600 Sobic006G065200 Sobic006G065200 Sobic010G181000--Sobic006G065200 Sobic004G302400 Sobic004G302400 Sobic010G181000--Sobic004G302400 Sobic006G280900 Sobic006G280900 Sobic010G181000--Sobic006G280900 Sobic006G103601 Sobic006G103601 Sobic010G181000--Sobic006G103601 Sobic009G174600 Sobic009G174600 Sobic010G181000--Sobic009G174600 Sobic007G119300 Sobic007G119300 Sobic010G181000--Sobic007G119300 Sobic002G116300 Sobic002G116300 Sobic010G181000--Sobic002G116300 Sobic002G065300 Sobic002G065300 Sobic010G181000--Sobic002G065300 Sobic001G543600--Sobic009G174600 Sobic001G543600--Sobic004G302400 Sobic001G543600--Sobic006G103601 Sobic001G543600--Sobic006G280900 Sobic002G285800 Sobic002G285800 Sobic001G543600--Sobic002G285800 Sobic001G543600--Sobic002G065300 Sobic009G238200 Sobic009G238200 Sobic001G543600--Sobic009G238200 Sobic010G136601 Sobic010G136601 Sobic001G543600--Sobic010G136601 Sobic001G543600--Sobic002G116300 Sobic010G106400 Sobic010G106400 Sobic006G065200--Sobic010G106400 Sobic001G537600 Sobic001G537600 Sobic006G065200--Sobic001G537600 Sobic007G165200 Sobic007G165200 Sobic006G065200--Sobic007G165200 Sobic006G065200--Sobic006G280900 Sobic001G068901 Sobic001G068901 Sobic006G065200--Sobic001G068901 Sobic006G065200--Sobic006G103601 Sobic001G308450 Sobic001G308450 Sobic006G065200--Sobic001G308450 Sobic006G065200--Sobic001G543600 Sobic006G065200--Sobic009G238200 Sobic006G222650 Sobic006G222650 Sobic004G302400--Sobic006G222650 Sobic004G302400--Sobic009G174600 Sobic010G035300 Sobic010G035300 Sobic004G302400--Sobic010G035300 Sobic004G302400--Sobic002G116300 Sobic006G162300 Sobic006G162300 Sobic004G302400--Sobic006G162300 Sobic004G302400--Sobic002G065300 Sobic004G302400--Sobic009G238200 Sobic006G146400 Sobic006G146400 Sobic004G302400--Sobic006G146400 Sobic004G302400--Sobic006G280900 Sobic006G280900--Sobic006G146400 Sobic006G280900--Sobic006G222650 Sobic006G280900--Sobic004G302400 Sobic006G280900--Sobic001G537600 Sobic009G083100 Sobic009G083100 Sobic006G280900--Sobic009G083100 Sobic006G280900--Sobic009G238200 Sobic006G280900--Sobic002G116300 Sobic006G280900--Sobic010G106400 Sobic006G280900--Sobic010G035300 Sobic006G103601--Sobic009G238200 Sobic006G103601--Sobic002G285800 Sobic006G103601--Sobic010G106400 Sobic006G103601--Sobic002G116300 Sobic006G103601--Sobic006G146400 Sobic006G103601--Sobic009G174600 Sobic006G103601--Sobic001G537600 Sobic003G379500 Sobic003G379500 Sobic006G103601--Sobic003G379500 Sobic009G258150 Sobic009G258150 Sobic006G103601--Sobic009G258150 Sobic009G174600--Sobic004G302400 Sobic009G174600--Sobic002G065300 Sobic009G174600--Sobic002G116300 Sobic009G174600--Sobic006G222650 Sobic009G174600--Sobic001G543600 Sobic009G174600--Sobic002G285800 Sobic009G174600--Sobic006G103601 Sobic009G174600--Sobic010G035300 Sobic009G174600--Sobic009G238200 Sobic002G426650 Sobic002G426650 Sobic007G119300--Sobic002G426650 Sobic008G112400 Sobic008G112400 Sobic007G119300--Sobic008G112400 Sobic005G001600 Sobic005G001600 Sobic007G119300--Sobic005G001600 Sobic007G119300--Sobic002G065300 Sobic007G119300--Sobic006G280900 Sobic007G119300--Sobic004G302400 Sobic007G119300--Sobic006G222650 Sobic007G119300--Sobic009G174600 Sobic004G302550 Sobic004G302550 Sobic007G119300--Sobic004G302550 Sobic002G116300--Sobic010G035300 Sobic002G116300--Sobic004G302400 Sobic002G116300--Sobic006G222650 Sobic002G116300--Sobic009G238200 Sobic002G116300--Sobic006G146400 Sobic008G119000 Sobic008G119000 Sobic002G116300--Sobic008G119000 Sobic006G222800 Sobic006G222800 Sobic002G116300--Sobic006G222800 Sobic002G247100 Sobic002G247100 Sobic002G116300--Sobic002G247100 Sobic002G116300--Sobic009G174600 Sobic002G065300--Sobic009G174600 Sobic002G065300--Sobic004G302400 Sobic002G065300--Sobic006G222650 Sobic002G065300--Sobic002G116300 Sobic002G065300--Sobic004G302550 Sobic002G065300--Sobic008G112400 Sobic004G269500 Sobic004G269500 Sobic002G065300--Sobic004G269500 Sobic004G177400 Sobic004G177400 Sobic002G065300--Sobic004G177400 Sobic002G065300--Sobic001G543600
Octagon: transcription factors


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