Gene annotation
Transcriptome id Sobic.004G011201.1
Synonym -
Functional annotation -
UniProt A0A1Z5RL75
Pfam PF00400
Panther DB PTHR22847
NCBI CDD KOG1332; Vesicle coat complex COPII, subunit SEC13 KOG0645WD40 repeat protein KOG0316Conserved WD40 repeat-containing protein
KEGG Orthology K10143; RFWD2, E3 ubiquitin-protein ligase RFWD2
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G52250 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os02g02380.1 : suppressor of phythchrome A, putative, expressed
MaizeGDB (Corn) Zm00025a018701
Brachypodium KQJ92893
Barley HORVU6Hr1G008200.1 , HORVU6Hr1G008200.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G128900 cytochrome P450, putative, expressed -
2 Sobic.010G158766 - -
3 Sobic.001G220200 exo70 exocyst complex subunit domain containing protein, expressed -
4 Sobic.001G410800 OsTOP6A3 - Topoisomerase 6 subunit A homolog 3, expressed K10878: meiotic recombination protein SPO11
5 Sobic.009G238200 transcription factor(PubMedID : 30367619)@WRKY19, expressed -
6 Sobic.009G174600 OsFBX407 - F-box domain containing protein, expressed -
7 Sobic.001G009200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
8 Sobic.001G535601 - -
9 Sobic.004G344301 - -
10 Sobic.004G357033 - -
11 Sobic.006G065200 SAM domain family protein, expressed -
12 Sobic.002G359200 helix-loop-helix DNA-binding domain containing protein, expressed -
13 Sobic.004G357066 - -
14 Sobic.002G218200 protein kinase domain containing protein, expressed -
15 Sobic.001G261553 - -
16 Sobic.001G543600 tetraspanin family protein, putative, expressed -
17 Sobic.006G103601 - -
18 Sobic.005G027032 - -
19 Sobic.006G259201 - -
20 Sobic.010G136601 - -


Gene co-expression network
sample Sobic004G011201 Sobic004G011201 Sobic001G128900 Sobic001G128900 Sobic004G011201--Sobic001G128900 Sobic010G158766 Sobic010G158766 Sobic004G011201--Sobic010G158766 Sobic001G220200 Sobic001G220200 Sobic004G011201--Sobic001G220200 Sobic001G410800 Sobic001G410800 Sobic004G011201--Sobic001G410800 Sobic009G238200 Sobic009G238200 Sobic004G011201--Sobic009G238200 Sobic009G174600 Sobic009G174600 Sobic004G011201--Sobic009G174600 Sobic001G009200 Sobic001G009200 Sobic004G011201--Sobic001G009200 Sobic001G535601 Sobic001G535601 Sobic004G011201--Sobic001G535601 Sobic004G344301 Sobic004G344301 Sobic004G011201--Sobic004G344301 Sobic001G261553 Sobic001G261553 Sobic001G128900--Sobic001G261553 Sobic010G096801 Sobic010G096801 Sobic001G128900--Sobic010G096801 Sobic001G128900--Sobic004G011201 Sobic004G199000 Sobic004G199000 Sobic001G128900--Sobic004G199000 Sobic001G128900--Sobic010G158766 Sobic009G004000 Sobic009G004000 Sobic001G128900--Sobic009G004000 Sobic004G357066 Sobic004G357066 Sobic001G128900--Sobic004G357066 Sobic001G128900--Sobic001G220200 Sobic001G139600 Sobic001G139600 Sobic001G128900--Sobic001G139600 Sobic010G158766--Sobic001G220200 Sobic004G357033 Sobic004G357033 Sobic010G158766--Sobic004G357033 Sobic010G158766--Sobic001G410800 Sobic010G158766--Sobic010G096801 Sobic010G158766--Sobic004G344301 Sobic009G225300 Sobic009G225300 Sobic010G158766--Sobic009G225300 Sobic006G259201 Sobic006G259201 Sobic010G158766--Sobic006G259201 Sobic010G158100 Sobic010G158100 Sobic010G158766--Sobic010G158100 Sobic007G224600 Sobic007G224600 Sobic010G158766--Sobic007G224600 Sobic001G220200--Sobic010G158766 Sobic001G220200--Sobic001G410800 Sobic001G220200--Sobic004G357033 Sobic001G220200--Sobic004G344301 Sobic001G220200--Sobic010G096801 Sobic001G220200--Sobic007G224600 Sobic001G519300 Sobic001G519300 Sobic001G220200--Sobic001G519300 Sobic001G220200--Sobic009G225300 Sobic001G220200--Sobic004G357066 Sobic001G410800--Sobic001G220200 Sobic001G410800--Sobic004G357033 Sobic002G218200 Sobic002G218200 Sobic001G410800--Sobic002G218200 Sobic001G410800--Sobic010G096801 Sobic001G410800--Sobic001G535601 Sobic001G410800--Sobic001G139600 Sobic001G410800--Sobic010G158766 Sobic010G136601 Sobic010G136601 Sobic001G410800--Sobic010G136601 Sobic001G223400 Sobic001G223400 Sobic001G410800--Sobic001G223400 Sobic002G116300 Sobic002G116300 Sobic009G238200--Sobic002G116300 Sobic001G115900 Sobic001G115900 Sobic009G238200--Sobic001G115900 Sobic003G167825 Sobic003G167825 Sobic009G238200--Sobic003G167825 Sobic006G103601 Sobic006G103601 Sobic009G238200--Sobic006G103601 Sobic006G069050 Sobic006G069050 Sobic009G238200--Sobic006G069050 Sobic009G258150 Sobic009G258150 Sobic009G238200--Sobic009G258150 Sobic006G146400 Sobic006G146400 Sobic009G238200--Sobic006G146400 Sobic009G085600 Sobic009G085600 Sobic009G238200--Sobic009G085600 Sobic003G126400 Sobic003G126400 Sobic009G238200--Sobic003G126400 Sobic004G302400 Sobic004G302400 Sobic009G174600--Sobic004G302400 Sobic002G065300 Sobic002G065300 Sobic009G174600--Sobic002G065300 Sobic009G174600--Sobic002G116300 Sobic006G222650 Sobic006G222650 Sobic009G174600--Sobic006G222650 Sobic001G543600 Sobic001G543600 Sobic009G174600--Sobic001G543600 Sobic002G285800 Sobic002G285800 Sobic009G174600--Sobic002G285800 Sobic009G174600--Sobic006G103601 Sobic010G035300 Sobic010G035300 Sobic009G174600--Sobic010G035300 Sobic009G174600--Sobic009G238200 Sobic001G009200--Sobic001G543600 Sobic001G009200--Sobic004G011201 Sobic001G009200--Sobic009G174600 Sobic001G009200--Sobic006G103601 Sobic006G065200 Sobic006G065200 Sobic001G009200--Sobic006G065200 Sobic007G119300 Sobic007G119300 Sobic001G009200--Sobic007G119300 Sobic006G280900 Sobic006G280900 Sobic001G009200--Sobic006G280900 Sobic001G009200--Sobic004G302400 Sobic007G165200 Sobic007G165200 Sobic001G009200--Sobic007G165200 Sobic001G535601--Sobic001G410800 Sobic001G535601--Sobic002G218200 Sobic001G535601--Sobic001G139600 Sobic003G224000 Sobic003G224000 Sobic001G535601--Sobic003G224000 Sobic001G535601--Sobic010G158100 Sobic001G535601--Sobic001G220200 Sobic001G535601--Sobic010G136601 Sobic001G535601--Sobic001G223400 Sobic002G140100 Sobic002G140100 Sobic001G535601--Sobic002G140100 Sobic004G344301--Sobic004G357033 Sobic004G344301--Sobic001G220200 Sobic004G344301--Sobic004G357066 Sobic004G225450 Sobic004G225450 Sobic004G344301--Sobic004G225450 Sobic004G344301--Sobic010G158766 Sobic004G344301--Sobic001G223400 Sobic003G427500 Sobic003G427500 Sobic004G344301--Sobic003G427500 Sobic004G344301--Sobic001G519300 Sobic010G074980 Sobic010G074980 Sobic004G344301--Sobic010G074980
Octagon: transcription factors


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