Gene annotation
Transcriptome id Sobic.004G302600.1
Synonym Sb04g033585
Functional annotation cyclin-T1-2, putative, expressed
UniProt C5XS50
Pfam PF00134
Panther DB PTHR10026 PTHR10026:SF77
NCBI CDD KOG0834; CDK9 kinase-activating protein cyclin T
KEGG Orthology K15188; cyclin T
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0000079regulation of cyclin-dependent protein serine/threonine kinase activity


Orthologs (automatic annotation)
TAIR AT5G45190 : Cyclin family protein
RAP-DB (Rice) LOC_Os02g24190.1 : cyclin-T1-2, putative, expressed
MaizeGDB (Corn) Zm00025a020966 , Zm00025a032139
Brachypodium KQJ94555 , KQJ94551 , KQJ94550 , KQJ94552
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G302600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G119500 Photosystem I reaction center subunit IV(PubMedID : 26186930)@photosystem I reaction center subunit IV A, chloroplast precursor, putative, expressed K02693: photosystem I subunit IV
2 Sobic.002G088200 expressed protein -
3 Sobic.002G228400 gibberellin receptor GID1L2, putative, expressed -
4 Sobic.002G186600 SMP-30/Gluconolaconase/LRE-like region containing protein, expressed -
5 Sobic.005G099700 expressed protein -
6 Sobic.001G004500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein PA4923, putative, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
7 Sobic.006G118000 expressed protein -
8 Sobic.003G107100 peptide transporter PTR2, putative, expressed -
9 Sobic.001G364100 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
10 Sobic.009G191300 photosystem II reaction center W protein, chloroplast precursor, putative, expressed K02721: photosystem II PsbW protein
11 Sobic.003G336200 expressed protein -
12 Sobic.002G132900 - -
13 Sobic.001G147400 Ferredoxin(PubMedID : 26186930)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
14 Sobic.004G272600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
15 Sobic.010G108500 B-box (BBX) protein(PubMedID : 30626335)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCT/B-box zinc finger protein, putative, expressed -
16 Sobic.001G070500 Photosystem I reaction center subunit III(PubMedID : 26186930)@photosystem I subunit F(PubMedID : 26465154)@photosystem I subunit F(PubMedID : 26465154)@Photosystem I subunit F(PubMedID : 29017446)@photosystem I reaction center subunit III, chloroplast precursor, putative, expressed K02694: photosystem I subunit III
17 Sobic.005G015200 Phototropic-responsive NPH3 family protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@BTBN22 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
18 Sobic.003G088800 multi-copper oxidase type I family protein, putative, expressed -
19 Sobic.001G310800 lectin-like receptor kinase, putative, expressed -
20 Sobic.010G260700 kelch motif family protein, expressed -


Gene co-expression network
sample Sobic004G302600 Sobic004G302600 Sobic002G119500 Sobic002G119500 Sobic004G302600--Sobic002G119500 Sobic002G088200 Sobic002G088200 Sobic004G302600--Sobic002G088200 Sobic002G228400 Sobic002G228400 Sobic004G302600--Sobic002G228400 Sobic002G186600 Sobic002G186600 Sobic004G302600--Sobic002G186600 Sobic005G099700 Sobic005G099700 Sobic004G302600--Sobic005G099700 Sobic001G004500 Sobic001G004500 Sobic004G302600--Sobic001G004500 Sobic006G118000 Sobic006G118000 Sobic004G302600--Sobic006G118000 Sobic003G107100 Sobic003G107100 Sobic004G302600--Sobic003G107100 Sobic001G364100 Sobic001G364100 Sobic004G302600--Sobic001G364100 Sobic002G242000 Sobic002G242000 Sobic002G119500--Sobic002G242000 Sobic001G070500 Sobic001G070500 Sobic002G119500--Sobic001G070500 Sobic004G056900 Sobic004G056900 Sobic002G119500--Sobic004G056900 Sobic009G130700 Sobic009G130700 Sobic002G119500--Sobic009G130700 Sobic002G033900 Sobic002G033900 Sobic002G119500--Sobic002G033900 Sobic002G119500--Sobic001G364100 Sobic001G078000 Sobic001G078000 Sobic002G119500--Sobic001G078000 Sobic001G046900 Sobic001G046900 Sobic002G119500--Sobic001G046900 Sobic002G329600 Sobic002G329600 Sobic002G119500--Sobic002G329600 Sobic001G543500 Sobic001G543500 Sobic002G088200--Sobic001G543500 Sobic001G516800 Sobic001G516800 Sobic002G088200--Sobic001G516800 Sobic004G033900 Sobic004G033900 Sobic002G088200--Sobic004G033900 Sobic003G264700 Sobic003G264700 Sobic002G088200--Sobic003G264700 Sobic002G256000 Sobic002G256000 Sobic002G088200--Sobic002G256000 Sobic002G088200--Sobic006G118000 Sobic002G088200--Sobic002G119500 Sobic001G147400 Sobic001G147400 Sobic002G088200--Sobic001G147400 Sobic010G208000 Sobic010G208000 Sobic002G088200--Sobic010G208000 Sobic006G204000 Sobic006G204000 Sobic002G228400--Sobic006G204000 Sobic002G228400--Sobic002G186600 Sobic004G124800 Sobic004G124800 Sobic002G228400--Sobic004G124800 Sobic010G244600 Sobic010G244600 Sobic002G228400--Sobic010G244600 Sobic005G208500 Sobic005G208500 Sobic002G228400--Sobic005G208500 Sobic007G204400 Sobic007G204400 Sobic002G228400--Sobic007G204400 Sobic006G080600 Sobic006G080600 Sobic002G228400--Sobic006G080600 Sobic008G139900 Sobic008G139900 Sobic002G228400--Sobic008G139900 Sobic009G049000 Sobic009G049000 Sobic002G228400--Sobic009G049000 Sobic002G186600--Sobic008G139900 Sobic004G330400 Sobic004G330400 Sobic002G186600--Sobic004G330400 Sobic003G396900 Sobic003G396900 Sobic002G186600--Sobic003G396900 Sobic001G493800 Sobic001G493800 Sobic002G186600--Sobic001G493800 Sobic006G162700 Sobic006G162700 Sobic002G186600--Sobic006G162700 Sobic002G206200 Sobic002G206200 Sobic002G186600--Sobic002G206200 Sobic009G202900 Sobic009G202900 Sobic002G186600--Sobic009G202900 Sobic003G109400 Sobic003G109400 Sobic002G186600--Sobic003G109400 Sobic002G231800 Sobic002G231800 Sobic002G186600--Sobic002G231800 Sobic001G435500 Sobic001G435500 Sobic005G099700--Sobic001G435500 Sobic005G099700--Sobic001G070500 Sobic010G189300 Sobic010G189300 Sobic005G099700--Sobic010G189300 Sobic003G163700 Sobic003G163700 Sobic005G099700--Sobic003G163700 Sobic004G272600 Sobic004G272600 Sobic005G099700--Sobic004G272600 Sobic005G099700--Sobic002G033900 Sobic001G066600 Sobic001G066600 Sobic005G099700--Sobic001G066600 Sobic006G073500 Sobic006G073500 Sobic005G099700--Sobic006G073500 Sobic009G229700 Sobic009G229700 Sobic005G099700--Sobic009G229700 Sobic005G015200 Sobic005G015200 Sobic001G004500--Sobic005G015200 Sobic008G036350 Sobic008G036350 Sobic001G004500--Sobic008G036350 Sobic005G167500 Sobic005G167500 Sobic001G004500--Sobic005G167500 Sobic005G052000 Sobic005G052000 Sobic001G004500--Sobic005G052000 Sobic008G036300 Sobic008G036300 Sobic001G004500--Sobic008G036300 Sobic001G004500--Sobic002G119500 Sobic001G004500--Sobic004G033900 Sobic001G310800 Sobic001G310800 Sobic001G004500--Sobic001G310800 Sobic005G192600 Sobic005G192600 Sobic001G004500--Sobic005G192600 Sobic006G118000--Sobic008G139900 Sobic006G118000--Sobic002G186600 Sobic004G072000 Sobic004G072000 Sobic006G118000--Sobic004G072000 Sobic010G108500 Sobic010G108500 Sobic006G118000--Sobic010G108500 Sobic008G131200 Sobic008G131200 Sobic006G118000--Sobic008G131200 Sobic006G118000--Sobic010G208000 Sobic006G118000--Sobic001G516800 SobicK044200 SobicK044200 Sobic006G118000--SobicK044200 Sobic001G115800 Sobic001G115800 Sobic006G118000--Sobic001G115800 Sobic003G336200 Sobic003G336200 Sobic003G107100--Sobic003G336200 Sobic001G077100 Sobic001G077100 Sobic003G107100--Sobic001G077100 Sobic003G107100--Sobic004G033900 Sobic003G107100--Sobic002G088200 Sobic003G107100--Sobic002G256000 Sobic010G082800 Sobic010G082800 Sobic003G107100--Sobic010G082800 Sobic003G107100--Sobic010G244600 Sobic003G107100--Sobic001G543500 Sobic003G107100--Sobic002G119500 Sobic006G234100 Sobic006G234100 Sobic001G364100--Sobic006G234100 Sobic002G339200 Sobic002G339200 Sobic001G364100--Sobic002G339200 Sobic010G241000 Sobic010G241000 Sobic001G364100--Sobic010G241000 Sobic010G109500 Sobic010G109500 Sobic001G364100--Sobic010G109500 Sobic002G264800 Sobic002G264800 Sobic001G364100--Sobic002G264800 Sobic006G136500 Sobic006G136500 Sobic001G364100--Sobic006G136500 Sobic001G364100--Sobic001G078000 Sobic009G234600 Sobic009G234600 Sobic001G364100--Sobic009G234600 Sobic001G364100--Sobic002G329600
Octagon: transcription factors


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