Gene annotation
Transcriptome id Sobic.005G073500.2,Sobic.005G073500.3
Synonym REM39, VRN1, Sb05g006090
Functional annotation B3 DNA binding domain containing protein, expressed
UniProt A0A1B6PQP9
Pfam PF02362
Panther DB PTHR31391 PTHR31391:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT3G18990 : AP2/B3-like transcriptional factor family protein
RAP-DB (Rice) LOC_Os11g09160.1 : B3 DNA binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a029602
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.005G073500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G053000 heavy metal-associated domain containing protein, expressed -
2 Sobic.003G235601 - -
3 Sobic.001G362800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K06940: uncharacterized protein
4 Sobic.007G030900 copine-6, putative, expressed -
5 Sobic.007G200200 lectin protein kinase family protein, putative, expressed -
6 Sobic.006G229600 serine/threonine-protein kinase receptor precursor, putative, expressed -
7 Sobic.001G456650 - K13066: E2.1.1.68, caffeic acid 3-O-methyltransferase
8 Sobic.006G005000 expressed protein -
9 Sobic.003G230300 expressed protein -
10 Sobic.006G232300 cytochrome P450 72A1, putative, expressed -
11 Sobic.002G314950 - -
12 Sobic.009G200100 GDSL-like lipase/acylhydrolase, putative, expressed -
13 Sobic.001G295900 AGC_PVPK_like_kin82y.17 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
14 Sobic.001G197500 - -
15 Sobic.006G110600 - -
16 Sobic.004G203600 Regulator of chromosome condensation domain containing protein, expressed -
17 Sobic.009G004300 ECT protein, putative, expressed -
18 Sobic.010G278300 OsPOP15 - Putative Prolyl Oligopeptidase homologue, expressed K01354: oligopeptidase B
19 Sobic.002G271900 EAP30/Vps36 family domain containing protein, expressed K12188: SNF8, ESCRT-II complex subunit VPS22
20 Sobic.010G253700 - -


Gene co-expression network
sample Sobic005G073500 Sobic005G073500 Sobic006G053000 Sobic006G053000 Sobic005G073500--Sobic006G053000 Sobic003G235601 Sobic003G235601 Sobic005G073500--Sobic003G235601 Sobic001G362800 Sobic001G362800 Sobic005G073500--Sobic001G362800 Sobic007G030900 Sobic007G030900 Sobic005G073500--Sobic007G030900 Sobic007G200200 Sobic007G200200 Sobic005G073500--Sobic007G200200 Sobic006G229600 Sobic006G229600 Sobic005G073500--Sobic006G229600 Sobic001G456650 Sobic001G456650 Sobic005G073500--Sobic001G456650 Sobic006G005000 Sobic006G005000 Sobic005G073500--Sobic006G005000 Sobic003G230300 Sobic003G230300 Sobic005G073500--Sobic003G230300 Sobic006G053000--Sobic006G229600 Sobic002G271900 Sobic002G271900 Sobic006G053000--Sobic002G271900 Sobic006G053000--Sobic003G230300 Sobic010G155901 Sobic010G155901 Sobic006G053000--Sobic010G155901 Sobic006G058300 Sobic006G058300 Sobic006G053000--Sobic006G058300 Sobic003G400332 Sobic003G400332 Sobic006G053000--Sobic003G400332 Sobic006G069050 Sobic006G069050 Sobic006G053000--Sobic006G069050 Sobic003G149900 Sobic003G149900 Sobic006G053000--Sobic003G149900 Sobic006G110600 Sobic006G110600 Sobic006G053000--Sobic006G110600 Sobic003G235601--Sobic007G200200 Sobic003G235601--Sobic006G229600 Sobic010G253700 Sobic010G253700 Sobic003G235601--Sobic010G253700 Sobic001G197500 Sobic001G197500 Sobic003G235601--Sobic001G197500 Sobic010G242100 Sobic010G242100 Sobic003G235601--Sobic010G242100 Sobic003G235601--Sobic001G456650 Sobic001G068901 Sobic001G068901 Sobic003G235601--Sobic001G068901 Sobic004G012100 Sobic004G012100 Sobic003G235601--Sobic004G012100 Sobic003G235601--Sobic006G053000 Sobic001G362800--Sobic006G053000 Sobic001G362800--Sobic003G230300 Sobic010G189800 Sobic010G189800 Sobic001G362800--Sobic010G189800 Sobic004G300500 Sobic004G300500 Sobic001G362800--Sobic004G300500 Sobic004G192700 Sobic004G192700 Sobic001G362800--Sobic004G192700 Sobic010G073300 Sobic010G073300 Sobic001G362800--Sobic010G073300 Sobic002G263900 Sobic002G263900 Sobic001G362800--Sobic002G263900 SobicK044200 SobicK044200 Sobic001G362800--SobicK044200 Sobic001G429100 Sobic001G429100 Sobic001G362800--Sobic001G429100 Sobic007G030900--Sobic006G053000 Sobic007G030900--Sobic005G073500 Sobic007G030900--Sobic003G235601 Sobic007G030900--Sobic002G271900 Sobic007G030900--Sobic007G200200 Sobic007G030900--Sobic001G456650 Sobic007G030900--Sobic006G229600 Sobic001G061000 Sobic001G061000 Sobic007G030900--Sobic001G061000 Sobic010G055600 Sobic010G055600 Sobic007G030900--Sobic010G055600 Sobic007G200200--Sobic001G456650 Sobic007G200200--Sobic001G068901 Sobic007G200200--Sobic006G229600 Sobic007G200200--Sobic001G061000 Sobic007G200200--Sobic003G235601 Sobic009G072400 Sobic009G072400 Sobic007G200200--Sobic009G072400 Sobic002G314950 Sobic002G314950 Sobic007G200200--Sobic002G314950 Sobic006G232300 Sobic006G232300 Sobic007G200200--Sobic006G232300 Sobic007G200200--Sobic002G271900 Sobic006G229600--Sobic002G271900 Sobic006G229600--Sobic006G069050 Sobic009G258150 Sobic009G258150 Sobic006G229600--Sobic009G258150 Sobic006G229600--Sobic004G012100 Sobic004G152501 Sobic004G152501 Sobic006G229600--Sobic004G152501 Sobic006G229600--Sobic006G058300 Sobic003G126400 Sobic003G126400 Sobic006G229600--Sobic003G126400 Sobic002G133600 Sobic002G133600 Sobic006G229600--Sobic002G133600 Sobic010G257300 Sobic010G257300 Sobic006G229600--Sobic010G257300 Sobic001G456650--Sobic007G200200 Sobic007G165200 Sobic007G165200 Sobic001G456650--Sobic007G165200 Sobic001G361750 Sobic001G361750 Sobic001G456650--Sobic001G361750 Sobic001G456650--Sobic001G068901 Sobic006G093400 Sobic006G093400 Sobic001G456650--Sobic006G093400 Sobic001G456650--Sobic001G061000 Sobic001G033200 Sobic001G033200 Sobic001G456650--Sobic001G033200 Sobic001G456650--Sobic009G072400 Sobic001G456650--Sobic006G232300 Sobic007G224600 Sobic007G224600 Sobic006G005000--Sobic007G224600 Sobic001G220200 Sobic001G220200 Sobic006G005000--Sobic001G220200 Sobic007G221800 Sobic007G221800 Sobic006G005000--Sobic007G221800 Sobic004G357033 Sobic004G357033 Sobic006G005000--Sobic004G357033 Sobic001G130900 Sobic001G130900 Sobic006G005000--Sobic001G130900 Sobic006G259201 Sobic006G259201 Sobic006G005000--Sobic006G259201 Sobic010G074980 Sobic010G074980 Sobic006G005000--Sobic010G074980 Sobic009G225300 Sobic009G225300 Sobic006G005000--Sobic009G225300 Sobic006G005000--Sobic004G192700 Sobic001G407000 Sobic001G407000 Sobic003G230300--Sobic001G407000 Sobic003G230300--Sobic006G053000 Sobic008G020300 Sobic008G020300 Sobic003G230300--Sobic008G020300 Sobic003G105300 Sobic003G105300 Sobic003G230300--Sobic003G105300 Sobic006G257500 Sobic006G257500 Sobic003G230300--Sobic006G257500 Sobic001G541900 Sobic001G541900 Sobic003G230300--Sobic001G541900 Sobic001G255700 Sobic001G255700 Sobic003G230300--Sobic001G255700 Sobic007G116600 Sobic007G116600 Sobic003G230300--Sobic007G116600 Sobic003G230300--Sobic006G058300
Octagon: transcription factors


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