Gene annotation
Transcriptome id Sobic.001G507600.2
Synonym Sb01g047380, SYCOARATH
Functional annotation cysteinyl-tRNA synthetase, putative, expressed
UniProt A0A1Z5SBF3
Pfam PF01406
Panther DB PTHR10890 PTHR10890:SF12
NCBI CDD -
KEGG Orthology K01883; CARS, cysteinyl-tRNA synthetase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G31170 : Cysteinyl-tRNA synthetase, class Ia family protein
RAP-DB (Rice) LOC_Os03g04960.1 : cysteinyl-tRNA synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a037699 , Zm00025a043902
Brachypodium KQK23703 , KQK23705 , KQK23704 , KQJ96980
Barley HORVU1Hr1G038700.3 , HORVU1Hr1G038700.1 , HORVU1Hr1G038700.7 , HORVU1Hr1G038700.6 , HORVU1Hr1G038700.5 , HORVU1Hr1G038700.8 , HORVU4Hr1G078750.5 , HORVU4Hr1G078750.4 , HORVU4Hr1G078750.1 , HORVU4Hr1G078750.3 , HORVU4Hr1G078750.2 , HORVU1Hr1G038700.10
Wheat TraesCS1A02G145100 , TraesCS4A02G408000 , TraesCS5B02G359900 , TraesCS5D02G366500 , TraesCS5A02G357400 , TraesCS4B02G307500 , TraesCS4D02G305700 , TraesCS1D02G409000
Populus -


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cDNA sequences
Sobic.001G507600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G143100 - -
2 Sobic.003G188400 glutamate dehydrogenase protein, putative, expressed K00262: E1.4.1.4, glutamate dehydrogenase (NADP+)
3 Sobic.001G311500 N-acetylglucosaminyl transferase component, putative, expressed K03860: PIGQ, phosphatidylinositol N-acetylglucosaminyltransferase subunit Q
4 Sobic.007G074600 tetratricopeptide repeat domain containing protein, expressed K15201: GTP3C3, general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
5 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
6 Sobic.004G209600 SWIM zinc finger family protein, putative, expressed -
7 Sobic.009G260500 tetratricopeptide repeat containing protein, putative, expressed K14408: CSTF3, cleavage stimulation factor subunit 3
8 Sobic.010G277500 expressed protein -
9 Sobic.005G191900 transporter family protein, putative, expressed -
10 Sobic.007G202900 ZOS8-09 - C2H2 zinc finger protein, expressed -
11 Sobic.007G171100 peptidylprolyl isomerase domain and WD repeat-containing protein 1, putative, expressed K12736: peptidylprolyl isomerase domain and WD repeat-containing protein 1
12 Sobic.001G363500 DIRP family protein, putative, expressed -
13 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
14 Sobic.003G225700 - -
15 Sobic.001G280900 expressed protein -
16 Sobic.001G017800 vacuolar sorting protein, putative, expressed -
17 Sobic.004G140600 exonuclease, putative, expressed K13288: orn, REX2, oligoribonuclease
18 Sobic.007G157000 protein transport protein, putative, expressed K14006: protein transport protein SEC23
19 Sobic.001G227200 haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed K00861: RFK, riboflavin kinase
20 Sobic.003G372700 expressed protein -


Gene co-expression network
sample Sobic001G507600 Sobic001G507600 Sobic010G143100 Sobic010G143100 Sobic001G507600--Sobic010G143100 Sobic003G188400 Sobic003G188400 Sobic001G507600--Sobic003G188400 Sobic001G311500 Sobic001G311500 Sobic001G507600--Sobic001G311500 Sobic007G074600 Sobic007G074600 Sobic001G507600--Sobic007G074600 Sobic010G139000 Sobic010G139000 Sobic001G507600--Sobic010G139000 Sobic004G209600 Sobic004G209600 Sobic001G507600--Sobic004G209600 Sobic009G260500 Sobic009G260500 Sobic001G507600--Sobic009G260500 Sobic010G277500 Sobic010G277500 Sobic001G507600--Sobic010G277500 Sobic005G191900 Sobic005G191900 Sobic001G507600--Sobic005G191900 Sobic001G227200 Sobic001G227200 Sobic010G143100--Sobic001G227200 Sobic004G140600 Sobic004G140600 Sobic010G143100--Sobic004G140600 Sobic001G461400 Sobic001G461400 Sobic010G143100--Sobic001G461400 Sobic002G180666 Sobic002G180666 Sobic010G143100--Sobic002G180666 Sobic001G261492 Sobic001G261492 Sobic010G143100--Sobic001G261492 Sobic010G143100--Sobic001G311500 Sobic002G343901 Sobic002G343901 Sobic010G143100--Sobic002G343901 Sobic005G112300 Sobic005G112300 Sobic010G143100--Sobic005G112300 Sobic006G032500 Sobic006G032500 Sobic010G143100--Sobic006G032500 Sobic001G433800 Sobic001G433800 Sobic003G188400--Sobic001G433800 Sobic001G063700 Sobic001G063700 Sobic003G188400--Sobic001G063700 Sobic003G360400 Sobic003G360400 Sobic003G188400--Sobic003G360400 Sobic002G133300 Sobic002G133300 Sobic003G188400--Sobic002G133300 Sobic003G095900 Sobic003G095900 Sobic003G188400--Sobic003G095900 Sobic002G317200 Sobic002G317200 Sobic003G188400--Sobic002G317200 Sobic007G159900 Sobic007G159900 Sobic003G188400--Sobic007G159900 Sobic010G112100 Sobic010G112100 Sobic003G188400--Sobic010G112100 Sobic003G188400--Sobic001G311500 Sobic001G311500--Sobic010G139000 Sobic009G247400 Sobic009G247400 Sobic001G311500--Sobic009G247400 Sobic001G311500--Sobic005G112300 Sobic003G059750 Sobic003G059750 Sobic001G311500--Sobic003G059750 Sobic008G009700 Sobic008G009700 Sobic001G311500--Sobic008G009700 Sobic004G314000 Sobic004G314000 Sobic001G311500--Sobic004G314000 Sobic010G279450 Sobic010G279450 Sobic001G311500--Sobic010G279450 Sobic008G028700 Sobic008G028700 Sobic001G311500--Sobic008G028700 Sobic001G363500 Sobic001G363500 Sobic001G311500--Sobic001G363500 Sobic007G074600--Sobic008G028700 Sobic007G074600--Sobic009G260500 Sobic007G074600--Sobic010G139000 Sobic007G161000 Sobic007G161000 Sobic007G074600--Sobic007G161000 Sobic007G074600--Sobic004G209600 Sobic007G074600--Sobic004G314000 Sobic007G074600--Sobic010G279450 Sobic004G009600 Sobic004G009600 Sobic007G074600--Sobic004G009600 Sobic002G042800 Sobic002G042800 Sobic007G074600--Sobic002G042800 Sobic010G139000--Sobic004G314000 Sobic010G139000--Sobic005G112300 Sobic010G139000--Sobic010G279450 Sobic010G206900 Sobic010G206900 Sobic010G139000--Sobic010G206900 Sobic010G139000--Sobic001G311500 Sobic001G036050 Sobic001G036050 Sobic010G139000--Sobic001G036050 Sobic010G139000--Sobic010G112100 Sobic010G010700 Sobic010G010700 Sobic010G139000--Sobic010G010700 Sobic005G008800 Sobic005G008800 Sobic010G139000--Sobic005G008800 Sobic004G209600--Sobic010G139000 Sobic004G209600--Sobic004G314000 Sobic004G209600--Sobic010G010700 Sobic007G117400 Sobic007G117400 Sobic004G209600--Sobic007G117400 Sobic004G209600--Sobic005G008800 Sobic002G134200 Sobic002G134200 Sobic004G209600--Sobic002G134200 Sobic004G209600--Sobic005G112300 Sobic004G242400 Sobic004G242400 Sobic004G209600--Sobic004G242400 Sobic003G280800 Sobic003G280800 Sobic004G209600--Sobic003G280800 Sobic001G219600 Sobic001G219600 Sobic009G260500--Sobic001G219600 Sobic009G260500--Sobic004G009600 Sobic009G260500--Sobic010G277500 Sobic009G260500--Sobic008G009700 Sobic009G260500--Sobic010G139000 Sobic009G260500--Sobic008G028700 Sobic009G040600 Sobic009G040600 Sobic009G260500--Sobic009G040600 Sobic002G309600 Sobic002G309600 Sobic009G260500--Sobic002G309600 Sobic009G260500--Sobic001G311500 Sobic004G208900 Sobic004G208900 Sobic010G277500--Sobic004G208900 Sobic006G209850 Sobic006G209850 Sobic010G277500--Sobic006G209850 Sobic007G065400 Sobic007G065400 Sobic010G277500--Sobic007G065400 Sobic010G277500--Sobic009G260500 Sobic010G277500--Sobic003G280800 Sobic010G277500--Sobic004G009600 Sobic010G277500--Sobic008G028700 Sobic004G258700 Sobic004G258700 Sobic010G277500--Sobic004G258700 Sobic006G216800 Sobic006G216800 Sobic010G277500--Sobic006G216800 Sobic005G191900--Sobic001G311500 Sobic005G191900--Sobic001G363500 Sobic010G094700 Sobic010G094700 Sobic005G191900--Sobic010G094700 Sobic005G191900--Sobic009G247400 Sobic005G191900--Sobic010G112100 Sobic007G157000 Sobic007G157000 Sobic005G191900--Sobic007G157000 Sobic006G118700 Sobic006G118700 Sobic005G191900--Sobic006G118700 Sobic005G191900--Sobic008G028700 Sobic008G002500 Sobic008G002500 Sobic005G191900--Sobic008G002500
Octagon: transcription factors


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