Gene annotation
Transcriptome id Sobic.003G203400.1,Sobic.003G203400.2
Synonym AME3, Sb03g026540
Functional annotation serine/threonine-protein kinase AFC3, putative, expressed
UniProt A0A1W0VY88 , C5XPI8
Pfam PF07714
Panther DB PTHR24058 PTHR24058:SF44
NCBI CDD KOG0671; LAMMER dual specificity kinases
KEGG Orthology K08287; dual-specificity kinase
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT4G32660 : Protein kinase superfamily protein
RAP-DB (Rice) LOC_Os01g40840.1 : serine/threonine-protein kinase AFC3, putative, expressed
MaizeGDB (Corn) Zm00025a038432 , Zm00025a028545
Brachypodium KQK08523
Barley HORVU3Hr1G051340.8 , HORVU3Hr1G051340.9 , HORVU3Hr1G051340.4 , HORVU3Hr1G051340.5 , HORVU3Hr1G051340.7 , HORVU3Hr1G051340.1 , HORVU3Hr1G051340.2 , HORVU3Hr1G051340.3 , HORVU3Hr1G051340.20 , HORVU3Hr1G051340.27 , HORVU3Hr1G051340.26 , HORVU3Hr1G051340.25 , HORVU3Hr1G051340.24 , HORVU3Hr1G051340.23 , HORVU3Hr1G051340.22 , HORVU3Hr1G051340.21 , HORVU3Hr1G051340.29 , HORVU3Hr1G051340.28 , HORVU3Hr1G051340.30 , HORVU3Hr1G051340.31 , HORVU3Hr1G051340.32 , HORVU3Hr1G051340.33 , HORVU3Hr1G051340.18 , HORVU3Hr1G051340.19 , HORVU3Hr1G051340.16 , HORVU3Hr1G051340.17 , HORVU3Hr1G051340.14 , HORVU3Hr1G051340.15 , HORVU3Hr1G051340.12 , HORVU3Hr1G051340.13 , HORVU3Hr1G051340.10 , HORVU3Hr1G051340.11
Wheat TraesCS3D02G214800 , TraesCS3D02G214800 , TraesCS3A02G212200 , TraesCS3A02G212200 , TraesCS3B02G242600 , TraesCS3B02G242600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G140600 exonuclease, putative, expressed K13288: orn, REX2, oligoribonuclease
2 Sobic.006G041600 WD domain, G-beta repeat domain containing protein, expressed K17985: activating molecule in BECN1-regulated autophagy protein 1
3 Sobic.003G188400 glutamate dehydrogenase protein, putative, expressed K00262: E1.4.1.4, glutamate dehydrogenase (NADP+)
4 Sobic.009G132700 - -
5 Sobic.001G111850 - -
6 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
7 Sobic.010G123600 WW domain containing protein, expressed -
8 Sobic.002G045600 transcriptional corepressor SEUSS, putative, expressed -
9 Sobic.004G334300 ATMAK10, putative, expressed -
10 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
11 Sobic.005G116200 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed K10765: alkylated DNA repair protein alkB homolog 1
12 Sobic.001G207000 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
13 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
14 Sobic.003G247500 expressed protein -
15 Sobic.010G143100 - -
16 Sobic.005G027400 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
17 Sobic.009G177500 CCR4-NOT transcription factor, putative, expressed K12605: CNOT2, CCR4-NOT transcription complex subunit 2
18 Sobic.008G063300 exonuclease, putative, expressed K14570: REX1, REXO1, RNA exonuclease 1
19 Sobic.003G119600 zinc finger, C3HC4 type domain containing protein, expressed -
20 Sobic.001G439300 AGAP009131-PA, putative, expressed K18826: calmodulin-lysine N-methyltransferase


Gene co-expression network
sample Sobic003G203400 Sobic003G203400 Sobic004G140600 Sobic004G140600 Sobic003G203400--Sobic004G140600 Sobic006G041600 Sobic006G041600 Sobic003G203400--Sobic006G041600 Sobic003G188400 Sobic003G188400 Sobic003G203400--Sobic003G188400 Sobic009G132700 Sobic009G132700 Sobic003G203400--Sobic009G132700 Sobic001G111850 Sobic001G111850 Sobic003G203400--Sobic001G111850 Sobic009G044800 Sobic009G044800 Sobic003G203400--Sobic009G044800 Sobic010G123600 Sobic010G123600 Sobic003G203400--Sobic010G123600 Sobic002G045600 Sobic002G045600 Sobic003G203400--Sobic002G045600 Sobic004G334300 Sobic004G334300 Sobic003G203400--Sobic004G334300 Sobic001G227200 Sobic001G227200 Sobic004G140600--Sobic001G227200 Sobic009G177500 Sobic009G177500 Sobic004G140600--Sobic009G177500 Sobic008G063300 Sobic008G063300 Sobic004G140600--Sobic008G063300 Sobic004G140600--Sobic009G132700 Sobic001G455600 Sobic001G455600 Sobic004G140600--Sobic001G455600 Sobic010G139000 Sobic010G139000 Sobic004G140600--Sobic010G139000 Sobic002G343901 Sobic002G343901 Sobic004G140600--Sobic002G343901 Sobic001G219600 Sobic001G219600 Sobic004G140600--Sobic001G219600 Sobic001G433800 Sobic001G433800 Sobic004G140600--Sobic001G433800 Sobic001G194200 Sobic001G194200 Sobic006G041600--Sobic001G194200 Sobic006G041600--Sobic001G433800 Sobic004G291900 Sobic004G291900 Sobic006G041600--Sobic004G291900 Sobic006G252900 Sobic006G252900 Sobic006G041600--Sobic006G252900 Sobic001G002000 Sobic001G002000 Sobic006G041600--Sobic001G002000 Sobic001G289800 Sobic001G289800 Sobic006G041600--Sobic001G289800 Sobic002G133300 Sobic002G133300 Sobic006G041600--Sobic002G133300 Sobic004G185800 Sobic004G185800 Sobic006G041600--Sobic004G185800 Sobic001G207000 Sobic001G207000 Sobic006G041600--Sobic001G207000 Sobic003G188400--Sobic001G433800 Sobic001G063700 Sobic001G063700 Sobic003G188400--Sobic001G063700 Sobic003G360400 Sobic003G360400 Sobic003G188400--Sobic003G360400 Sobic003G188400--Sobic002G133300 Sobic003G095900 Sobic003G095900 Sobic003G188400--Sobic003G095900 Sobic002G317200 Sobic002G317200 Sobic003G188400--Sobic002G317200 Sobic007G159900 Sobic007G159900 Sobic003G188400--Sobic007G159900 Sobic010G112100 Sobic010G112100 Sobic003G188400--Sobic010G112100 Sobic001G311500 Sobic001G311500 Sobic003G188400--Sobic001G311500 Sobic005G027400 Sobic005G027400 Sobic009G132700--Sobic005G027400 Sobic009G132700--Sobic004G140600 Sobic003G170900 Sobic003G170900 Sobic009G132700--Sobic003G170900 Sobic009G132700--Sobic001G455600 Sobic002G211800 Sobic002G211800 Sobic009G132700--Sobic002G211800 Sobic009G132700--Sobic006G252900 Sobic009G132700--Sobic001G433800 Sobic009G132700--Sobic001G111850 Sobic009G132700--Sobic003G188400 Sobic003G166750 Sobic003G166750 Sobic001G111850--Sobic003G166750 Sobic009G165700 Sobic009G165700 Sobic001G111850--Sobic009G165700 Sobic001G439300 Sobic001G439300 Sobic001G111850--Sobic001G439300 Sobic008G001200 Sobic008G001200 Sobic001G111850--Sobic008G001200 Sobic009G256400 Sobic009G256400 Sobic001G111850--Sobic009G256400 Sobic001G111850--Sobic001G433800 Sobic001G370900 Sobic001G370900 Sobic001G111850--Sobic001G370900 Sobic001G111850--Sobic010G123600 Sobic002G042600 Sobic002G042600 Sobic001G111850--Sobic002G042600 Sobic009G044800--Sobic003G360400 Sobic003G352200 Sobic003G352200 Sobic009G044800--Sobic003G352200 Sobic001G227400 Sobic001G227400 Sobic009G044800--Sobic001G227400 Sobic009G044800--Sobic002G045600 Sobic010G116600 Sobic010G116600 Sobic009G044800--Sobic010G116600 Sobic007G218000 Sobic007G218000 Sobic009G044800--Sobic007G218000 Sobic001G025000 Sobic001G025000 Sobic009G044800--Sobic001G025000 Sobic009G044800--Sobic001G433800 Sobic007G183900 Sobic007G183900 Sobic009G044800--Sobic007G183900 Sobic010G010700 Sobic010G010700 Sobic010G123600--Sobic010G010700 Sobic009G256300 Sobic009G256300 Sobic010G123600--Sobic009G256300 Sobic010G123600--Sobic003G170900 Sobic005G167700 Sobic005G167700 Sobic010G123600--Sobic005G167700 Sobic005G112300 Sobic005G112300 Sobic010G123600--Sobic005G112300 Sobic010G123600--Sobic001G433800 Sobic010G123600--Sobic010G112100 Sobic010G123600--Sobic001G194200 Sobic010G123600--Sobic008G001200 Sobic003G408600 Sobic003G408600 Sobic002G045600--Sobic003G408600 Sobic009G027300 Sobic009G027300 Sobic002G045600--Sobic009G027300 Sobic002G045600--Sobic009G044800 Sobic007G163100 Sobic007G163100 Sobic002G045600--Sobic007G163100 Sobic002G045600--Sobic003G360400 Sobic001G313700 Sobic001G313700 Sobic002G045600--Sobic001G313700 Sobic004G200200 Sobic004G200200 Sobic002G045600--Sobic004G200200 Sobic002G045600--Sobic001G207000 Sobic003G422500 Sobic003G422500 Sobic002G045600--Sobic003G422500 Sobic003G186000 Sobic003G186000 Sobic004G334300--Sobic003G186000 Sobic004G334300--Sobic008G001200 Sobic001G457800 Sobic001G457800 Sobic004G334300--Sobic001G457800 Sobic006G040500 Sobic006G040500 Sobic004G334300--Sobic006G040500 Sobic004G334300--Sobic010G123600 Sobic002G308700 Sobic002G308700 Sobic004G334300--Sobic002G308700 Sobic005G162500 Sobic005G162500 Sobic004G334300--Sobic005G162500 Sobic004G244900 Sobic004G244900 Sobic004G334300--Sobic004G244900 Sobic004G276400 Sobic004G276400 Sobic004G334300--Sobic004G276400
Octagon: transcription factors


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