Gene annotation
Transcriptome id Sobic.005G116200.2,Sobic.005G116200.1
Synonym Sb05g016810
Functional annotation oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
UniProt C5Y2F9 , A0A1B6PRT6
Pfam PF13532
Panther DB PTHR16557 PTHR16557:SF2
NCBI CDD KOG2731; DNA alkylation damage repair protein
KEGG Orthology K10765; alkylated DNA repair protein alkB homolog 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G11780 : oxidoreductase, 2OG-Fe(II) oxygenase family protein
RAP-DB (Rice) LOC_Os11g29690.1 : oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a029730
Brachypodium KQJ91676
Barley -
Wheat TraesCS3B02G018500 , TraesCS3A02G028300 , TraesCS3D02G017600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
2 Sobic.006G041600 WD domain, G-beta repeat domain containing protein, expressed K17985: activating molecule in BECN1-regulated autophagy protein 1
3 Sobic.001G251100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
4 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
5 Sobic.005G027400 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
6 Sobic.003G188400 glutamate dehydrogenase protein, putative, expressed K00262: E1.4.1.4, glutamate dehydrogenase (NADP+)
7 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
8 Sobic.008G063300 exonuclease, putative, expressed K14570: REX1, REXO1, RNA exonuclease 1
9 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
10 Sobic.004G092500 OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
11 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
12 Sobic.001G392300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12820: DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43
13 Sobic.002G401500 WD domain, G-beta repeat domain containing protein, expressed K14005: protein transport protein SEC31
14 Sobic.001G354600 SAP domain containing protein, expressed K12875: ACIN1, apoptotic chromatin condensation inducer in the nucleus
15 Sobic.001G227400 WD domain, G-beta repeat domain containing protein, expressed -
16 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
17 Sobic.001G289800 BAH domain containing protein, putative, expressed -
18 Sobic.003G379200 wound-responsive family protein, putative, expressed -
19 Sobic.008G082500 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
20 Sobic.003G104000 expressed protein K15133: mediator of RNA polymerase II transcription subunit 17


Gene co-expression network
sample Sobic005G116200 Sobic005G116200 Sobic002G133300 Sobic002G133300 Sobic005G116200--Sobic002G133300 Sobic006G041600 Sobic006G041600 Sobic005G116200--Sobic006G041600 Sobic001G251100 Sobic001G251100 Sobic005G116200--Sobic001G251100 Sobic001G433800 Sobic001G433800 Sobic005G116200--Sobic001G433800 Sobic005G027400 Sobic005G027400 Sobic005G116200--Sobic005G027400 Sobic003G188400 Sobic003G188400 Sobic005G116200--Sobic003G188400 Sobic003G095900 Sobic003G095900 Sobic005G116200--Sobic003G095900 Sobic008G063300 Sobic008G063300 Sobic005G116200--Sobic008G063300 Sobic009G044800 Sobic009G044800 Sobic005G116200--Sobic009G044800 Sobic004G276400 Sobic004G276400 Sobic002G133300--Sobic004G276400 Sobic002G133300--Sobic001G433800 Sobic001G004400 Sobic001G004400 Sobic002G133300--Sobic001G004400 Sobic001G289800 Sobic001G289800 Sobic002G133300--Sobic001G289800 Sobic003G072200 Sobic003G072200 Sobic002G133300--Sobic003G072200 Sobic002G397500 Sobic002G397500 Sobic002G133300--Sobic002G397500 Sobic004G131300 Sobic004G131300 Sobic002G133300--Sobic004G131300 Sobic001G194200 Sobic001G194200 Sobic002G133300--Sobic001G194200 Sobic001G493700 Sobic001G493700 Sobic002G133300--Sobic001G493700 Sobic006G041600--Sobic001G194200 Sobic006G041600--Sobic001G433800 Sobic004G291900 Sobic004G291900 Sobic006G041600--Sobic004G291900 Sobic006G252900 Sobic006G252900 Sobic006G041600--Sobic006G252900 Sobic001G002000 Sobic001G002000 Sobic006G041600--Sobic001G002000 Sobic006G041600--Sobic001G289800 Sobic006G041600--Sobic002G133300 Sobic004G185800 Sobic004G185800 Sobic006G041600--Sobic004G185800 Sobic001G207000 Sobic001G207000 Sobic006G041600--Sobic001G207000 Sobic003G104000 Sobic003G104000 Sobic001G251100--Sobic003G104000 Sobic002G256700 Sobic002G256700 Sobic001G251100--Sobic002G256700 Sobic001G251100--Sobic004G131300 Sobic001G251100--Sobic002G133300 Sobic003G293300 Sobic003G293300 Sobic001G251100--Sobic003G293300 Sobic007G054800 Sobic007G054800 Sobic001G251100--Sobic007G054800 Sobic001G251100--Sobic001G493700 Sobic004G257100 Sobic004G257100 Sobic001G251100--Sobic004G257100 Sobic003G379200 Sobic003G379200 Sobic001G251100--Sobic003G379200 Sobic010G112100 Sobic010G112100 Sobic001G433800--Sobic010G112100 Sobic003G360400 Sobic003G360400 Sobic001G433800--Sobic003G360400 Sobic007G063000 Sobic007G063000 Sobic001G433800--Sobic007G063000 Sobic005G112300 Sobic005G112300 Sobic001G433800--Sobic005G112300 Sobic004G242400 Sobic004G242400 Sobic001G433800--Sobic004G242400 Sobic001G433800--Sobic002G133300 Sobic001G363500 Sobic001G363500 Sobic001G433800--Sobic001G363500 Sobic001G433800--Sobic006G252900 Sobic001G433800--Sobic006G041600 Sobic002G309600 Sobic002G309600 Sobic005G027400--Sobic002G309600 Sobic004G065100 Sobic004G065100 Sobic005G027400--Sobic004G065100 Sobic001G451400 Sobic001G451400 Sobic005G027400--Sobic001G451400 Sobic009G132700 Sobic009G132700 Sobic005G027400--Sobic009G132700 Sobic007G117400 Sobic007G117400 Sobic005G027400--Sobic007G117400 Sobic001G219600 Sobic001G219600 Sobic005G027400--Sobic001G219600 Sobic005G027400--Sobic001G289800 Sobic008G047800 Sobic008G047800 Sobic005G027400--Sobic008G047800 Sobic004G006900 Sobic004G006900 Sobic005G027400--Sobic004G006900 Sobic003G188400--Sobic001G433800 Sobic001G063700 Sobic001G063700 Sobic003G188400--Sobic001G063700 Sobic003G188400--Sobic003G360400 Sobic003G188400--Sobic002G133300 Sobic003G188400--Sobic003G095900 Sobic002G317200 Sobic002G317200 Sobic003G188400--Sobic002G317200 Sobic007G159900 Sobic007G159900 Sobic003G188400--Sobic007G159900 Sobic003G188400--Sobic010G112100 Sobic001G311500 Sobic001G311500 Sobic003G188400--Sobic001G311500 Sobic003G095900--Sobic004G242400 Sobic003G095900--Sobic001G433800 Sobic003G095900--Sobic002G133300 Sobic001G089600 Sobic001G089600 Sobic003G095900--Sobic001G089600 Sobic006G088200 Sobic006G088200 Sobic003G095900--Sobic006G088200 Sobic003G095900--Sobic003G360400 Sobic009G256400 Sobic009G256400 Sobic003G095900--Sobic009G256400 Sobic003G095900--Sobic004G276400 Sobic003G095900--Sobic001G289800 Sobic004G140600 Sobic004G140600 Sobic008G063300--Sobic004G140600 Sobic008G063300--Sobic001G433800 Sobic006G096900 Sobic006G096900 Sobic008G063300--Sobic006G096900 Sobic008G063300--Sobic003G360400 Sobic008G063300--Sobic003G095900 Sobic010G123600 Sobic010G123600 Sobic008G063300--Sobic010G123600 Sobic008G063300--Sobic003G188400 Sobic009G177500 Sobic009G177500 Sobic008G063300--Sobic009G177500 Sobic010G059500 Sobic010G059500 Sobic008G063300--Sobic010G059500 Sobic009G044800--Sobic003G360400 Sobic003G352200 Sobic003G352200 Sobic009G044800--Sobic003G352200 Sobic001G227400 Sobic001G227400 Sobic009G044800--Sobic001G227400 Sobic002G045600 Sobic002G045600 Sobic009G044800--Sobic002G045600 Sobic010G116600 Sobic010G116600 Sobic009G044800--Sobic010G116600 Sobic007G218000 Sobic007G218000 Sobic009G044800--Sobic007G218000 Sobic001G025000 Sobic001G025000 Sobic009G044800--Sobic001G025000 Sobic009G044800--Sobic001G433800 Sobic007G183900 Sobic007G183900 Sobic009G044800--Sobic007G183900
Octagon: transcription factors


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