Gene annotation
Transcriptome id Sobic.003G059200.1
Synonym Sb03g005080, TRB1, ATTRB1
Functional annotation single myb histone, putative, expressed
UniProt C5XP52
Pfam PF00249 PF00538
Panther DB PTHR21717 PTHR21717:SF19
NCBI CDD -
KEGG Orthology K09422; transcription factor MYB, plant
Gene Ontology GO:0006334; nucleosome assembly GO:0005634nucleus GO:0003677DNA binding GO:0000786nucleosome


Orthologs (automatic annotation)
TAIR AT1G49950 : telomere repeat binding factor 1
RAP-DB (Rice) LOC_Os12g41920.1 : single myb histone, putative, expressed
MaizeGDB (Corn) Zm00025a017255 , Zm00025a023345
Brachypodium -
Barley HORVU5Hr1G093100.2 , HORVU5Hr1G093100.3 , HORVU5Hr1G093100.1 , HORVU5Hr1G093100.6 , HORVU5Hr1G093100.7 , HORVU5Hr1G093100.5 , HORVU5Hr1G093100.8 , HORVU5Hr1G093100.9 , HORVU5Hr1G093100.10
Wheat TraesCS5A02G375400 , TraesCS5D02G385000 , TraesCS5B02G377500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G017300 adaptor complexes medium subunit family domain containing protein, expressed K12398: AP-3 complex subunit mu
2 Sobic.003G223200 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
3 Sobic.010G018800 impaired sucrose induction 1, putative, expressed -
4 Sobic.001G193900 - -
5 Sobic.007G163600 expressed protein -
6 Sobic.006G146900 pentatricopeptide repeat domain containing protein, putative, expressed -
7 Sobic.008G067301 - -
8 Sobic.001G135300 expressed protein -
9 Sobic.003G218700 LSD1 zinc finger domain containing protein, expressed -
10 Sobic.003G273300 single myb histone, putative, expressed K09422: transcription factor MYB, plant
11 Sobic.003G045200 expressed protein K18404: tudor domain-containing protein 3
12 Sobic.004G270200 CPuORF20 - conserved peptide uORF-containing transcript, expressed K08829: male germ cell-associated kinase
13 Sobic.010G268100 pseudouridine synthase family protein, putative, expressed K15452: mitochondrial tRNA pseudouridine27/28 synthase
14 Sobic.003G264000 cytidylyltransferase domain containing protein, expressed -
15 Sobic.005G111000 receptor protein kinase TMK1 precursor, putative, expressed -
16 Sobic.003G219400 RNA recognition motif containing protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
17 Sobic.002G234600 ZOS9-15 - C2H2 zinc finger protein, expressed -
18 Sobic.001G423700 - K13171: SRRM1, serine/arginine repetitive matrix protein 1
19 Sobic.005G114600 tyrosine aminotransferase, putative, expressed K03263: translation initiation factor 5A
20 Sobic.006G154100 mRNA cap guanine-N7 methyltransferase 2, putative, expressed K00565: mRNA (guanine-N7-)-methyltransferase


Gene co-expression network
sample Sobic003G059200 Sobic003G059200 Sobic004G017300 Sobic004G017300 Sobic003G059200--Sobic004G017300 Sobic003G223200 Sobic003G223200 Sobic003G059200--Sobic003G223200 Sobic010G018800 Sobic010G018800 Sobic003G059200--Sobic010G018800 Sobic001G193900 Sobic001G193900 Sobic003G059200--Sobic001G193900 Sobic007G163600 Sobic007G163600 Sobic003G059200--Sobic007G163600 Sobic006G146900 Sobic006G146900 Sobic003G059200--Sobic006G146900 Sobic008G067301 Sobic008G067301 Sobic003G059200--Sobic008G067301 Sobic001G135300 Sobic001G135300 Sobic003G059200--Sobic001G135300 Sobic003G218700 Sobic003G218700 Sobic003G059200--Sobic003G218700 Sobic006G154100 Sobic006G154100 Sobic004G017300--Sobic006G154100 Sobic001G393700 Sobic001G393700 Sobic004G017300--Sobic001G393700 Sobic001G369000 Sobic001G369000 Sobic004G017300--Sobic001G369000 Sobic003G006400 Sobic003G006400 Sobic004G017300--Sobic003G006400 Sobic002G111600 Sobic002G111600 Sobic004G017300--Sobic002G111600 Sobic001G145400 Sobic001G145400 Sobic004G017300--Sobic001G145400 Sobic006G166200 Sobic006G166200 Sobic004G017300--Sobic006G166200 Sobic008G124800 Sobic008G124800 Sobic004G017300--Sobic008G124800 Sobic001G335900 Sobic001G335900 Sobic004G017300--Sobic001G335900 Sobic002G371500 Sobic002G371500 Sobic003G223200--Sobic002G371500 Sobic003G363500 Sobic003G363500 Sobic003G223200--Sobic003G363500 Sobic001G017800 Sobic001G017800 Sobic003G223200--Sobic001G017800 Sobic001G237700 Sobic001G237700 Sobic003G223200--Sobic001G237700 Sobic001G423700 Sobic001G423700 Sobic003G223200--Sobic001G423700 Sobic001G449400 Sobic001G449400 Sobic003G223200--Sobic001G449400 Sobic004G351600 Sobic004G351600 Sobic003G223200--Sobic004G351600 Sobic010G151900 Sobic010G151900 Sobic003G223200--Sobic010G151900 Sobic003G219400 Sobic003G219400 Sobic003G223200--Sobic003G219400 Sobic003G365400 Sobic003G365400 Sobic010G018800--Sobic003G365400 Sobic010G256433 Sobic010G256433 Sobic010G018800--Sobic010G256433 Sobic003G222400 Sobic003G222400 Sobic010G018800--Sobic003G222400 Sobic002G254600 Sobic002G254600 Sobic010G018800--Sobic002G254600 Sobic001G042400 Sobic001G042400 Sobic010G018800--Sobic001G042400 Sobic004G339000 Sobic004G339000 Sobic010G018800--Sobic004G339000 Sobic005G160900 Sobic005G160900 Sobic010G018800--Sobic005G160900 Sobic007G085350 Sobic007G085350 Sobic010G018800--Sobic007G085350 Sobic002G200500 Sobic002G200500 Sobic010G018800--Sobic002G200500 Sobic001G059900 Sobic001G059900 Sobic001G193900--Sobic001G059900 Sobic002G297000 Sobic002G297000 Sobic001G193900--Sobic002G297000 Sobic004G269900 Sobic004G269900 Sobic001G193900--Sobic004G269900 Sobic002G022600 Sobic002G022600 Sobic001G193900--Sobic002G022600 Sobic006G098400 Sobic006G098400 Sobic001G193900--Sobic006G098400 Sobic001G193900--Sobic006G146900 Sobic003G037200 Sobic003G037200 Sobic001G193900--Sobic003G037200 Sobic002G219500 Sobic002G219500 Sobic001G193900--Sobic002G219500 Sobic002G120200 Sobic002G120200 Sobic001G193900--Sobic002G120200 Sobic003G245900 Sobic003G245900 Sobic007G163600--Sobic003G245900 Sobic006G146800 Sobic006G146800 Sobic007G163600--Sobic006G146800 Sobic010G123300 Sobic010G123300 Sobic007G163600--Sobic010G123300 Sobic001G131700 Sobic001G131700 Sobic007G163600--Sobic001G131700 Sobic003G052600 Sobic003G052600 Sobic007G163600--Sobic003G052600 Sobic001G471600 Sobic001G471600 Sobic007G163600--Sobic001G471600 Sobic003G273300 Sobic003G273300 Sobic007G163600--Sobic003G273300 Sobic008G125100 Sobic008G125100 Sobic007G163600--Sobic008G125100 Sobic003G332200 Sobic003G332200 Sobic007G163600--Sobic003G332200 Sobic006G146900--Sobic002G120200 Sobic006G146900--Sobic002G200500 Sobic002G237700 Sobic002G237700 Sobic006G146900--Sobic002G237700 Sobic006G240300 Sobic006G240300 Sobic006G146900--Sobic006G240300 Sobic003G182100 Sobic003G182100 Sobic006G146900--Sobic003G182100 Sobic001G404000 Sobic001G404000 Sobic006G146900--Sobic001G404000 Sobic001G362400 Sobic001G362400 Sobic006G146900--Sobic001G362400 Sobic006G146900--Sobic001G193900 Sobic009G233600 Sobic009G233600 Sobic006G146900--Sobic009G233600 Sobic001G172200 Sobic001G172200 Sobic008G067301--Sobic001G172200 Sobic007G225800 Sobic007G225800 Sobic008G067301--Sobic007G225800 Sobic006G072900 Sobic006G072900 Sobic008G067301--Sobic006G072900 Sobic003G006833 Sobic003G006833 Sobic008G067301--Sobic003G006833 Sobic006G004000 Sobic006G004000 Sobic008G067301--Sobic006G004000 Sobic005G195800 Sobic005G195800 Sobic008G067301--Sobic005G195800 Sobic006G063001 Sobic006G063001 Sobic008G067301--Sobic006G063001 Sobic004G135900 Sobic004G135900 Sobic008G067301--Sobic004G135900 Sobic006G073150 Sobic006G073150 Sobic008G067301--Sobic006G073150 Sobic004G010600 Sobic004G010600 Sobic001G135300--Sobic004G010600 Sobic007G162500 Sobic007G162500 Sobic001G135300--Sobic007G162500 Sobic001G135300--Sobic006G154100 Sobic003G432800 Sobic003G432800 Sobic001G135300--Sobic003G432800 Sobic001G135300--Sobic006G146900 Sobic004G039900 Sobic004G039900 Sobic001G135300--Sobic004G039900 Sobic006G255900 Sobic006G255900 Sobic001G135300--Sobic006G255900 Sobic001G135300--Sobic002G237700 Sobic005G150900 Sobic005G150900 Sobic001G135300--Sobic005G150900 Sobic002G079100 Sobic002G079100 Sobic003G218700--Sobic002G079100 Sobic005G111000 Sobic005G111000 Sobic003G218700--Sobic005G111000 Sobic006G280100 Sobic006G280100 Sobic003G218700--Sobic006G280100 Sobic002G234600 Sobic002G234600 Sobic003G218700--Sobic002G234600 Sobic008G017100 Sobic008G017100 Sobic003G218700--Sobic008G017100 Sobic010G262100 Sobic010G262100 Sobic003G218700--Sobic010G262100 Sobic010G138900 Sobic010G138900 Sobic003G218700--Sobic010G138900 Sobic008G088842 Sobic008G088842 Sobic003G218700--Sobic008G088842 Sobic001G134300 Sobic001G134300 Sobic003G218700--Sobic001G134300
Octagon: transcription factors


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