Gene annotation
Transcriptome id Sobic.010G268100.4,Sobic.010G268100.1,Sobic.010G268100.3,Sobic.010G268100.2
Synonym Sb10g030300
Functional annotation pseudouridine synthase family protein, putative, expressed
UniProt C5Z1X0 , A0A1W0VV01 , A0A194YLS6
Pfam PF01479 PF00849
Panther DB PTHR11079 PTHR11079:SF73
NCBI CDD KOG1919; RNA pseudouridylate synthases
KEGG Orthology K15452; mitochondrial tRNA pseudouridine27/28 synthase
Gene Ontology GO:0003723; RNA binding GO:0009982pseudouridine synthase activity GO:0009451RNA modification GO:0001522pseudouridine synthesis


Orthologs (automatic annotation)
TAIR AT1G76050 : Pseudouridine synthase family protein
RAP-DB (Rice) LOC_Os06g50360.2,LOC_Os06g50360.1 : pseudouridine synthase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a041714
Brachypodium KQK16716 , KQK16717 , KQK16714 , KQK16715 , KQK16718
Barley HORVU7Hr1G117540.18 , HORVU7Hr1G117540.13 , HORVU7Hr1G117540.12 , HORVU7Hr1G117540.10 , HORVU7Hr1G117540.17 , HORVU7Hr1G117540.16 , HORVU7Hr1G117540.14 , HORVU7Hr1G117540.3 , HORVU7Hr1G117540.2 , HORVU7Hr1G117540.1 , HORVU7Hr1G117540.7 , HORVU7Hr1G117540.6 , HORVU7Hr1G117540.5 , HORVU7Hr1G117540.4 , HORVU7Hr1G117540.9 , HORVU7Hr1G117540.8
Wheat TraesCS7B02G451500 , TraesCS7A02G534400
Populus -


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cDNA sequences
Sobic.010G268100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G381900 PRC-barrel domain protein, putative, expressed -
2 Sobic.004G204500 expressed protein -
3 Sobic.004G023400 expressed protein -
4 Sobic.009G237800 expressed protein -
5 Sobic.010G208000 ribosomal protein L35, putative, expressed K02916: RP-L35, MRPL35, large subunit ribosomal protein L35
6 Sobic.010G008700 expressed protein -
7 Sobic.003G019000 uncharacterized protein HI0077, putative, expressed -
8 Sobic.007G123600 GTPase of unknown function domain containing protein, putative, expressed K03650: mnmE, trmE, tRNA modification GTPase
9 Sobic.009G255300 OsClp8 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
10 Sobic.004G249600 mitochondrial carrier protein, putative, expressed K15111: solute carrier family 25 (mitochondrial S-adenosylmethionine transporter), member 26
11 Sobic.003G211500 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
12 Sobic.001G426300 OTU-like cysteine protease family protein, putative, expressed -
13 Sobic.004G072000 ribosome, putative, expressed -
14 Sobic.006G021800 uncharacterized protein family UPF0016 domain containing protein, expressed -
15 Sobic.005G128100 acyl carrier protein, putative, expressed -
16 Sobic.001G237700 RNA recognition motif containing protein, putative, expressed K13091: RBM39, RNA-binding protein 39
17 Sobic.002G200200 CAAX amino terminal protease family protein, putative, expressed K07052: uncharacterized protein
18 Sobic.004G270500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
19 Sobic.007G043200 (31.4% identity with SbCCoAOMT/43.2% similarity)(PubMedID : 27457122)@Functions are not investigated(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase, putative, expressed -
20 Sobic.003G256200 ribosomal protein rpS20, putative, expressed K02968: RP-S20, small subunit ribosomal protein S20


Gene co-expression network
sample Sobic010G268100 Sobic010G268100 Sobic001G381900 Sobic001G381900 Sobic010G268100--Sobic001G381900 Sobic004G204500 Sobic004G204500 Sobic010G268100--Sobic004G204500 Sobic004G023400 Sobic004G023400 Sobic010G268100--Sobic004G023400 Sobic009G237800 Sobic009G237800 Sobic010G268100--Sobic009G237800 Sobic010G208000 Sobic010G208000 Sobic010G268100--Sobic010G208000 Sobic010G008700 Sobic010G008700 Sobic010G268100--Sobic010G008700 Sobic003G019000 Sobic003G019000 Sobic010G268100--Sobic003G019000 Sobic007G123600 Sobic007G123600 Sobic010G268100--Sobic007G123600 Sobic009G255300 Sobic009G255300 Sobic010G268100--Sobic009G255300 Sobic001G381900--Sobic004G204500 Sobic004G123600 Sobic004G123600 Sobic001G381900--Sobic004G123600 Sobic003G211500 Sobic003G211500 Sobic001G381900--Sobic003G211500 Sobic001G381900--Sobic010G268100 Sobic004G119500 Sobic004G119500 Sobic001G381900--Sobic004G119500 Sobic004G123300 Sobic004G123300 Sobic001G381900--Sobic004G123300 Sobic006G248700 Sobic006G248700 Sobic001G381900--Sobic006G248700 Sobic003G132300 Sobic003G132300 Sobic001G381900--Sobic003G132300 Sobic001G381900--Sobic009G237800 Sobic004G204500--Sobic001G381900 Sobic004G204500--Sobic004G023400 Sobic004G204500--Sobic010G208000 Sobic003G264700 Sobic003G264700 Sobic004G204500--Sobic003G264700 Sobic004G204500--Sobic003G211500 Sobic004G204500--Sobic009G237800 Sobic004G204500--Sobic003G132300 Sobic006G229300 Sobic006G229300 Sobic004G204500--Sobic006G229300 Sobic005G128100 Sobic005G128100 Sobic004G204500--Sobic005G128100 Sobic004G023400--Sobic004G204500 Sobic004G023400--Sobic003G264700 Sobic003G309700 Sobic003G309700 Sobic004G023400--Sobic003G309700 Sobic004G023400--Sobic003G132300 Sobic007G204400 Sobic007G204400 Sobic004G023400--Sobic007G204400 Sobic004G023400--Sobic009G237800 Sobic006G127300 Sobic006G127300 Sobic004G023400--Sobic006G127300 Sobic009G179800 Sobic009G179800 Sobic004G023400--Sobic009G179800 Sobic004G023400--Sobic010G208000 Sobic002G077000 Sobic002G077000 Sobic009G237800--Sobic002G077000 Sobic009G237800--Sobic004G204500 Sobic009G237800--Sobic004G023400 Sobic009G237800--Sobic007G204400 Sobic009G237800--Sobic005G128100 Sobic009G237800--Sobic003G264700 Sobic001G337600 Sobic001G337600 Sobic009G237800--Sobic001G337600 Sobic004G072000 Sobic004G072000 Sobic009G237800--Sobic004G072000 Sobic010G244600 Sobic010G244600 Sobic009G237800--Sobic010G244600 Sobic001G030200 Sobic001G030200 Sobic010G208000--Sobic001G030200 Sobic001G516800 Sobic001G516800 Sobic010G208000--Sobic001G516800 Sobic010G208000--Sobic004G072000 Sobic004G034500 Sobic004G034500 Sobic010G208000--Sobic004G034500 Sobic002G019900 Sobic002G019900 Sobic010G208000--Sobic002G019900 Sobic008G131200 Sobic008G131200 Sobic010G208000--Sobic008G131200 Sobic010G208000--Sobic009G179800 Sobic010G208000--Sobic004G204500 Sobic004G066300 Sobic004G066300 Sobic010G208000--Sobic004G066300 Sobic003G162900 Sobic003G162900 Sobic010G008700--Sobic003G162900 Sobic002G200200 Sobic002G200200 Sobic010G008700--Sobic002G200200 Sobic001G448600 Sobic001G448600 Sobic010G008700--Sobic001G448600 Sobic008G078400 Sobic008G078400 Sobic010G008700--Sobic008G078400 Sobic004G255500 Sobic004G255500 Sobic010G008700--Sobic004G255500 Sobic006G112600 Sobic006G112600 Sobic010G008700--Sobic006G112600 Sobic010G008700--Sobic007G123600 Sobic010G008700--Sobic001G337600 Sobic004G328400 Sobic004G328400 Sobic010G008700--Sobic004G328400 Sobic001G214800 Sobic001G214800 Sobic003G019000--Sobic001G214800 Sobic003G434700 Sobic003G434700 Sobic003G019000--Sobic003G434700 Sobic009G129100 Sobic009G129100 Sobic003G019000--Sobic009G129100 Sobic001G494500 Sobic001G494500 Sobic003G019000--Sobic001G494500 Sobic003G067100 Sobic003G067100 Sobic003G019000--Sobic003G067100 Sobic003G019000--Sobic007G123600 Sobic001G354600 Sobic001G354600 Sobic003G019000--Sobic001G354600 Sobic001G375300 Sobic001G375300 Sobic003G019000--Sobic001G375300 Sobic001G022500 Sobic001G022500 Sobic003G019000--Sobic001G022500 Sobic003G151500 Sobic003G151500 Sobic007G123600--Sobic003G151500 Sobic006G055800 Sobic006G055800 Sobic007G123600--Sobic006G055800 Sobic002G043600 Sobic002G043600 Sobic007G123600--Sobic002G043600 Sobic007G123600--Sobic004G119500 Sobic002G181000 Sobic002G181000 Sobic007G123600--Sobic002G181000 Sobic007G123600--Sobic002G200200 Sobic003G432500 Sobic003G432500 Sobic007G123600--Sobic003G432500 Sobic001G461700 Sobic001G461700 Sobic007G123600--Sobic001G461700 Sobic004G338300 Sobic004G338300 Sobic007G123600--Sobic004G338300 Sobic003G179100 Sobic003G179100 Sobic009G255300--Sobic003G179100 Sobic007G013500 Sobic007G013500 Sobic009G255300--Sobic007G013500 Sobic006G278500 Sobic006G278500 Sobic009G255300--Sobic006G278500 Sobic010G036000 Sobic010G036000 Sobic009G255300--Sobic010G036000 Sobic002G285300 Sobic002G285300 Sobic009G255300--Sobic002G285300 Sobic009G255300--Sobic004G072000 Sobic010G073300 Sobic010G073300 Sobic009G255300--Sobic010G073300 Sobic003G440400 Sobic003G440400 Sobic009G255300--Sobic003G440400 Sobic008G139900 Sobic008G139900 Sobic009G255300--Sobic008G139900
Octagon: transcription factors


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