Gene annotation
Transcriptome id Sobic.004G270500.1
Synonym ATAOX1A, AOX1A, Sb04g030820
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
immutans protein, putative, expressed
UniProt C5Y0E2
Pfam PF01786
Panther DB PTHR31803 PTHR31803:SF9
NCBI CDD -
KEGG Orthology K17893; AOX1, ubiquinol oxidase
Gene Ontology GO:0009916; alternative oxidase activity


Orthologs (automatic annotation)
TAIR AT3G22370 : alternative oxidase 1A
RAP-DB (Rice) LOC_Os02g47200.1 : transposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a009949 , Zm00025a009948 , Zm00025a009947 , Zm00025a021669
Brachypodium PNT69270 , KQJ84390 , KQJ84391 , KQJ84389 , KQK00893
Barley HORVU6Hr1G068150.4 , HORVU6Hr1G068150.5 , HORVU6Hr1G068150.6 , HORVU0Hr1G005420.4 , HORVU0Hr1G005420.3 , HORVU6Hr1G068150.2 , HORVU6Hr1G068150.3 , HORVU2Hr1G101920.2 , HORVU2Hr1G101920.1 , HORVU2Hr1G101990.2 , HORVU2Hr1G101990.1 , HORVU5Hr1G012020.2 , HORVU6Hr1G068150.1
Wheat TraesCS3B02G087900 , TraesCS6D02G245800 , TraesCS2B02G459300 , TraesCS2D02G436700 , TraesCS6A02G269100 , TraesCS2A02G439400 , TraesCS4B02G272200 , TraesCS6B02G296400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G270500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G208000 ribosomal protein L35, putative, expressed K02916: RP-L35, MRPL35, large subunit ribosomal protein L35
2 Sobic.004G353900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase/ transition metal ion binding protein, putative, expressed -
3 Sobic.004G034500 ribosomal protein L3, putative, expressed K02906: RP-L3, MRPL3, large subunit ribosomal protein L3
4 Sobic.004G066300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.006G079100 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
6 Sobic.009G010900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD dependent epimerase/dehydratase family protein, putative, expressed -
7 Sobic.010G268100 pseudouridine synthase family protein, putative, expressed K15452: mitochondrial tRNA pseudouridine27/28 synthase
8 Sobic.008G131200 DUF538 domain containing protein, putative, expressed -
9 Sobic.001G030200 transcription termination factor nusG family protein, expressed -
10 Sobic.001G516800 signal recognition particle 43 kDa protein, chloroplast precursor, putative, expressed K12271: SRP43, signal recognition particle 43 kDa protein
11 Sobic.004G072000 ribosome, putative, expressed -
12 Sobic.007G046400 zinc finger, C3HC4 type domain containing protein, expressed -
13 Sobic.009G254400 polygalacturonase inhibitor 1 precursor, putative, expressed -
14 Sobic.004G297800 transferase family protein, putative, expressed -
15 Sobic.002G330800 BTBN15 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
16 Sobic.002G293900 mitochondrial glycoprotein, putative, expressed -
17 Sobic.001G543500 "generic sugar transporter, up-regulated under drought stress "(PubMedID : 24655390)@Putative ortholog gene associated with awn presence/absence in wheat(PubMedID : 25237112)@transporter family protein, putative, expressed -
18 Sobic.001G263500 glycosyl hydrolases family 17, putative, expressed -
19 Sobic.001G094200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calcium homeostasis regulator CHoR1, putative, expressed -
20 Sobic.006G268200 protochlorophyllide reductase A, chloroplast precursor, putative, expressed K00218: protochlorophyllide reductase


Gene co-expression network
sample Sobic004G270500 Sobic004G270500 Sobic010G208000 Sobic010G208000 Sobic004G270500--Sobic010G208000 Sobic004G353900 Sobic004G353900 Sobic004G270500--Sobic004G353900 Sobic004G034500 Sobic004G034500 Sobic004G270500--Sobic004G034500 Sobic004G066300 Sobic004G066300 Sobic004G270500--Sobic004G066300 Sobic006G079100 Sobic006G079100 Sobic004G270500--Sobic006G079100 Sobic009G010900 Sobic009G010900 Sobic004G270500--Sobic009G010900 Sobic010G268100 Sobic010G268100 Sobic004G270500--Sobic010G268100 Sobic008G131200 Sobic008G131200 Sobic004G270500--Sobic008G131200 Sobic001G030200 Sobic001G030200 Sobic004G270500--Sobic001G030200 Sobic010G208000--Sobic001G030200 Sobic001G516800 Sobic001G516800 Sobic010G208000--Sobic001G516800 Sobic004G072000 Sobic004G072000 Sobic010G208000--Sobic004G072000 Sobic010G208000--Sobic004G034500 Sobic002G019900 Sobic002G019900 Sobic010G208000--Sobic002G019900 Sobic010G208000--Sobic008G131200 Sobic009G179800 Sobic009G179800 Sobic010G208000--Sobic009G179800 Sobic004G204500 Sobic004G204500 Sobic010G208000--Sobic004G204500 Sobic010G208000--Sobic004G066300 Sobic004G353900--Sobic004G066300 Sobic004G353900--Sobic001G030200 Sobic004G353900--Sobic010G208000 Sobic004G353900--Sobic004G034500 Sobic004G353900--Sobic009G010900 Sobic004G353900--Sobic008G131200 Sobic009G083000 Sobic009G083000 Sobic004G353900--Sobic009G083000 Sobic004G353900--Sobic001G516800 Sobic001G094200 Sobic001G094200 Sobic004G353900--Sobic001G094200 Sobic004G034500--Sobic004G072000 Sobic004G034500--Sobic010G208000 Sobic004G034500--Sobic001G516800 Sobic004G034500--Sobic001G030200 Sobic003G246600 Sobic003G246600 Sobic004G034500--Sobic003G246600 Sobic004G034500--Sobic004G066300 Sobic004G033900 Sobic004G033900 Sobic004G034500--Sobic004G033900 Sobic004G034500--Sobic008G131200 Sobic001G543500 Sobic001G543500 Sobic004G034500--Sobic001G543500 Sobic004G066300--Sobic001G030200 Sobic004G066300--Sobic004G353900 Sobic004G066300--Sobic008G131200 Sobic001G115800 Sobic001G115800 Sobic004G066300--Sobic001G115800 SobicK044200 SobicK044200 Sobic004G066300--SobicK044200 Sobic004G066300--Sobic010G208000 Sobic004G297800 Sobic004G297800 Sobic004G066300--Sobic004G297800 Sobic006G247500 Sobic006G247500 Sobic004G066300--Sobic006G247500 Sobic009G154000 Sobic009G154000 Sobic004G066300--Sobic009G154000 Sobic006G079100--Sobic004G297800 Sobic010G014200 Sobic010G014200 Sobic006G079100--Sobic010G014200 Sobic001G263500 Sobic001G263500 Sobic006G079100--Sobic001G263500 Sobic004G128600 Sobic004G128600 Sobic006G079100--Sobic004G128600 Sobic010G161300 Sobic010G161300 Sobic006G079100--Sobic010G161300 Sobic005G226900 Sobic005G226900 Sobic006G079100--Sobic005G226900 Sobic006G079100--Sobic008G131200 Sobic006G079100--Sobic006G247500 Sobic010G179000 Sobic010G179000 Sobic006G079100--Sobic010G179000 Sobic008G030000 Sobic008G030000 Sobic009G010900--Sobic008G030000 Sobic004G168500 Sobic004G168500 Sobic009G010900--Sobic004G168500 Sobic007G222600 Sobic007G222600 Sobic009G010900--Sobic007G222600 Sobic004G001200 Sobic004G001200 Sobic009G010900--Sobic004G001200 Sobic003G202300 Sobic003G202300 Sobic009G010900--Sobic003G202300 Sobic008G084200 Sobic008G084200 Sobic009G010900--Sobic008G084200 Sobic010G233800 Sobic010G233800 Sobic009G010900--Sobic010G233800 Sobic009G010900--Sobic001G094200 Sobic006G238000 Sobic006G238000 Sobic009G010900--Sobic006G238000 Sobic001G381900 Sobic001G381900 Sobic010G268100--Sobic001G381900 Sobic010G268100--Sobic004G204500 Sobic004G023400 Sobic004G023400 Sobic010G268100--Sobic004G023400 Sobic009G237800 Sobic009G237800 Sobic010G268100--Sobic009G237800 Sobic010G268100--Sobic010G208000 Sobic010G008700 Sobic010G008700 Sobic010G268100--Sobic010G008700 Sobic003G019000 Sobic003G019000 Sobic010G268100--Sobic003G019000 Sobic007G123600 Sobic007G123600 Sobic010G268100--Sobic007G123600 Sobic009G255300 Sobic009G255300 Sobic010G268100--Sobic009G255300 Sobic008G131200--Sobic001G115800 Sobic008G131200--Sobic004G297800 Sobic008G139900 Sobic008G139900 Sobic008G131200--Sobic008G139900 Sobic008G131200--Sobic004G072000 Sobic010G258700 Sobic010G258700 Sobic008G131200--Sobic010G258700 Sobic008G131200--Sobic006G247500 Sobic008G131200--Sobic004G066300 Sobic008G131200--Sobic006G079100 Sobic003G013100 Sobic003G013100 Sobic008G131200--Sobic003G013100 Sobic001G030200--Sobic010G208000 Sobic001G030200--Sobic002G019900 Sobic001G030200--Sobic004G066300 Sobic001G030200--Sobic001G516800 Sobic001G030200--Sobic004G353900 Sobic001G030200--Sobic008G131200 Sobic004G016700 Sobic004G016700 Sobic001G030200--Sobic004G016700 Sobic001G030200--Sobic004G034500 Sobic001G030200--Sobic004G072000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.