Gene annotation
Transcriptome id Sobic.006G268200.1
Synonym Sb06g033030, PORA
Functional annotation protochlorophyllide reductase A, chloroplast precursor, putative, expressed
UniProt C5YAK0
Pfam PF00106
Panther DB PTHR24322 PTHR24322:SF393
NCBI CDD KOG1208; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
KEGG Orthology K00218; protochlorophyllide reductase
Gene Ontology GO:0016491; oxidoreductase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT5G54190 : protochlorophyllide oxidoreductase A
RAP-DB (Rice) LOC_Os04g58200.1 : protochlorophyllide reductase A, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a017505 , Zm00025a009283 , Zm00025a006463
Brachypodium KQJ85303 , KQK01659
Barley HORVU5Hr1G104070.1 , HORVU2Hr1G119090.3 , HORVU2Hr1G119090.1 , HORVU2Hr1G119090.4 , HORVU4Hr1G073090.1 , HORVU2Hr1G119090.2 , HORVU2Hr1G119050.2 , HORVU2Hr1G119050.3 , HORVU2Hr1G119050.1 , HORVU2Hr1G006120.3 , HORVU2Hr1G020490.1 , HORVU1Hr1G044680.1 , HORVU1Hr1G044680.3 , HORVU1Hr1G044680.2 , HORVU1Hr1G044680.4
Wheat TraesCS2D02G563600 , TraesCS2A02G590600 , TraesCS2D02G563700 , TraesCS1A02G171000 , TraesCS1A02G171000 , TraesCS1B02G186300 , TraesCS2B02G593000 , TraesCS2B02G593000 , TraesCS1D02G168700 , TraesCS1D02G168700
Populus -


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cDNA sequences
Sobic.006G268200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G246600 plastid-specific 50S ribosomal protein 6, chloroplast precursor, putative, expressed K19035: 50S ribosomal protein 6
2 Sobic.009G179800 - -
3 Sobic.003G246400 ribosomal protein L7/L12 C-terminal domain containing protein, expressed K02935: RP-L7, MRPL12, large subunit ribosomal protein L7/L12
4 Sobic.001G076500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
5 Sobic.010G233800 ribosomal protein L24, putative, expressed K02895: RP-L24, MRPL24, large subunit ribosomal protein L24
6 Sobic.001G427000 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
7 Sobic.003G393800 30S ribosomal protein S31, chloroplast precursor, putative, expressed K19033: PSRP4, 30S ribosomal protein S31
8 Sobic.001G411300 ribosomal protein L10, putative, expressed K02864: RP-L10, MRPL10, large subunit ribosomal protein L10
9 Sobic.001G191000 ribosomal protein, putative, expressed K02988: RP-S5, MRPS5, small subunit ribosomal protein S5
10 Sobic.001G094200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calcium homeostasis regulator CHoR1, putative, expressed -
11 Sobic.001G027600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal L18p/L5e family protein, putative, expressed K02881: RP-L18, MRPL18, large subunit ribosomal protein L18
12 Sobic.008G084200 fasciclin domain containing protein, expressed -
13 Sobic.002G383400 Protein oxidoreductase (Os)(PubMedID : 27208977)@amine oxidase family protein, putative, expressed -
14 Sobic.004G317900 expressed protein -
15 Sobic.010G072900 peroxiredoxin, putative, expressed K03564: BCP, PRXQ, thioredoxin-dependent peroxiredoxin
16 Sobic.009G010900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD dependent epimerase/dehydratase family protein, putative, expressed -
17 Sobic.001G453300 50S ribosomal protein L15, chloroplast precursor, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
18 Sobic.007G127600 transferase family protein, putative, expressed -
19 Sobic.003G256200 ribosomal protein rpS20, putative, expressed K02968: RP-S20, small subunit ribosomal protein S20
20 Sobic.006G238000 LTPL128 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -


Gene co-expression network
sample Sobic006G268200 Sobic006G268200 Sobic003G246600 Sobic003G246600 Sobic006G268200--Sobic003G246600 Sobic009G179800 Sobic009G179800 Sobic006G268200--Sobic009G179800 Sobic003G246400 Sobic003G246400 Sobic006G268200--Sobic003G246400 Sobic001G076500 Sobic001G076500 Sobic006G268200--Sobic001G076500 Sobic010G233800 Sobic010G233800 Sobic006G268200--Sobic010G233800 Sobic001G427000 Sobic001G427000 Sobic006G268200--Sobic001G427000 Sobic003G393800 Sobic003G393800 Sobic006G268200--Sobic003G393800 Sobic001G411300 Sobic001G411300 Sobic006G268200--Sobic001G411300 Sobic001G191000 Sobic001G191000 Sobic006G268200--Sobic001G191000 Sobic003G246600--Sobic003G393800 Sobic003G246600--Sobic009G179800 Sobic003G246600--Sobic003G246400 Sobic003G246600--Sobic010G233800 Sobic003G246600--Sobic001G411300 Sobic003G246600--Sobic001G076500 Sobic003G246600--Sobic001G427000 Sobic003G246600--Sobic006G268200 Sobic001G094200 Sobic001G094200 Sobic003G246600--Sobic001G094200 Sobic009G130700 Sobic009G130700 Sobic009G179800--Sobic009G130700 Sobic009G179800--Sobic003G393800 Sobic009G179800--Sobic003G246400 Sobic009G179800--Sobic003G246600 Sobic010G072900 Sobic010G072900 Sobic009G179800--Sobic010G072900 Sobic009G179800--Sobic001G411300 Sobic001G382100 Sobic001G382100 Sobic009G179800--Sobic001G382100 Sobic005G128100 Sobic005G128100 Sobic009G179800--Sobic005G128100 Sobic003G239300 Sobic003G239300 Sobic009G179800--Sobic003G239300 Sobic004G317900 Sobic004G317900 Sobic003G246400--Sobic004G317900 Sobic003G246400--Sobic001G411300 Sobic003G256200 Sobic003G256200 Sobic003G246400--Sobic003G256200 Sobic001G453300 Sobic001G453300 Sobic003G246400--Sobic001G453300 Sobic003G328200 Sobic003G328200 Sobic003G246400--Sobic003G328200 Sobic004G298100 Sobic004G298100 Sobic003G246400--Sobic004G298100 Sobic003G246400--Sobic001G191000 Sobic003G246400--Sobic010G233800 Sobic003G246400--Sobic003G393800 Sobic001G076500--Sobic001G427000 Sobic001G027600 Sobic001G027600 Sobic001G076500--Sobic001G027600 Sobic001G076500--Sobic001G453300 Sobic001G076500--Sobic010G233800 Sobic001G383900 Sobic001G383900 Sobic001G076500--Sobic001G383900 Sobic001G076500--Sobic003G393800 Sobic003G132600 Sobic003G132600 Sobic001G076500--Sobic003G132600 Sobic004G044000 Sobic004G044000 Sobic001G076500--Sobic004G044000 Sobic001G076500--Sobic003G246400 Sobic010G233800--Sobic001G076500 Sobic010G233800--Sobic001G453300 Sobic010G233800--Sobic004G317900 Sobic010G233800--Sobic001G427000 Sobic010G233800--Sobic003G393800 Sobic010G233800--Sobic003G246400 Sobic010G233800--Sobic001G027600 Sobic007G185100 Sobic007G185100 Sobic010G233800--Sobic007G185100 Sobic004G116100 Sobic004G116100 Sobic010G233800--Sobic004G116100 Sobic001G427000--Sobic001G076500 Sobic001G427000--Sobic001G027600 Sobic001G427000--Sobic001G453300 Sobic001G427000--Sobic003G132600 Sobic001G427000--Sobic010G233800 Sobic001G427000--Sobic003G256200 Sobic001G427000--Sobic003G393800 Sobic001G427000--Sobic003G246400 Sobic001G427000--Sobic001G383900 Sobic003G393800--Sobic010G233800 Sobic003G393800--Sobic001G076500 Sobic003G393800--Sobic003G246400 Sobic003G393800--Sobic009G179800 Sobic003G393800--Sobic001G427000 Sobic003G393800--Sobic001G453300 Sobic003G393800--Sobic004G116100 Sobic003G393800--Sobic005G128100 Sobic003G393800--Sobic003G246600 Sobic001G411300--Sobic003G246400 Sobic001G411300--Sobic003G256200 Sobic001G411300--Sobic001G191000 Sobic001G411300--Sobic001G427000 Sobic001G411300--Sobic003G393800 Sobic006G280050 Sobic006G280050 Sobic001G411300--Sobic006G280050 Sobic001G411300--Sobic001G453300 Sobic001G411300--Sobic004G298100 Sobic001G411300--Sobic009G179800 Sobic001G191000--Sobic006G280050 Sobic001G191000--Sobic003G256200 Sobic001G191000--Sobic003G246400 Sobic001G191000--Sobic001G027600 Sobic001G191000--Sobic001G411300 Sobic002G305700 Sobic002G305700 Sobic001G191000--Sobic002G305700 Sobic001G191000--Sobic001G453300 Sobic004G191200 Sobic004G191200 Sobic001G191000--Sobic004G191200 Sobic006G107600 Sobic006G107600 Sobic001G191000--Sobic006G107600
Octagon: transcription factors


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