Gene annotation
Transcriptome id Sobic.001G426300.1,Sobic.001G426300.2
Synonym Sb01g040060
Functional annotation OTU-like cysteine protease family protein, putative, expressed
UniProt C5WQ46 , C5WYV2
Pfam PF02338
Panther DB PTHR13312 PTHR13312:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G38025 : Cysteine proteinases superfamily protein
RAP-DB (Rice) LOC_Os03g15930.2,LOC_Os03g15930.1 : OTU-like cysteine protease family protein, putative, expressed
MaizeGDB (Corn) Zm00025a001749
Brachypodium KQK22424 , KQK22423
Barley -
Wheat TraesCS4B02G212700 , TraesCS4D02G213700 , TraesCS4D02G213700 , TraesCS4A02G091800 , TraesCS4A02G091800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G427000 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
2 Sobic.003G392000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PDE312/PTAC10, putative, expressed -
3 Sobic.004G017200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.004G249600 mitochondrial carrier protein, putative, expressed K15111: solute carrier family 25 (mitochondrial S-adenosylmethionine transporter), member 26
5 Sobic.001G120000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
6 Sobic.009G233800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf23, putative, expressed -
7 Sobic.009G137000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monooxygenase, putative, expressed -
8 Sobic.001G191000 ribosomal protein, putative, expressed K02988: RP-S5, MRPS5, small subunit ribosomal protein S5
9 Sobic.004G202600 rhodanese family protein, putative, expressed -
10 Sobic.003G256200 ribosomal protein rpS20, putative, expressed K02968: RP-S20, small subunit ribosomal protein S20
11 Sobic.001G094200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calcium homeostasis regulator CHoR1, putative, expressed -
12 Sobic.004G168500 peroxiredoxin, putative, expressed K03386: PRDX2_4, peroxiredoxin 2/4
13 Sobic.001G027600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal L18p/L5e family protein, putative, expressed K02881: RP-L18, MRPL18, large subunit ribosomal protein L18
14 Sobic.004G066300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.003G305300 - -
16 Sobic.004G191200 PsbQ-like protein 1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxygen evolving enhancer protein 3, identical, putative, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
17 Sobic.008G107800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@SWIB/MDM2 domain containing protein, expressed -
18 Sobic.006G263800 HAD-superfamily hydrolase subfamily IA, variant 3, putative, expressed -
19 Sobic.002G243650 - K00784: ribonuclease Z
20 Sobic.001G395300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsClp4 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit


Gene co-expression network
sample Sobic001G426300 Sobic001G426300 Sobic001G427000 Sobic001G427000 Sobic001G426300--Sobic001G427000 Sobic003G392000 Sobic003G392000 Sobic001G426300--Sobic003G392000 Sobic004G017200 Sobic004G017200 Sobic001G426300--Sobic004G017200 Sobic004G249600 Sobic004G249600 Sobic001G426300--Sobic004G249600 Sobic001G120000 Sobic001G120000 Sobic001G426300--Sobic001G120000 Sobic009G233800 Sobic009G233800 Sobic001G426300--Sobic009G233800 Sobic009G137000 Sobic009G137000 Sobic001G426300--Sobic009G137000 Sobic001G191000 Sobic001G191000 Sobic001G426300--Sobic001G191000 Sobic004G202600 Sobic004G202600 Sobic001G426300--Sobic004G202600 Sobic001G076500 Sobic001G076500 Sobic001G427000--Sobic001G076500 Sobic001G027600 Sobic001G027600 Sobic001G427000--Sobic001G027600 Sobic001G453300 Sobic001G453300 Sobic001G427000--Sobic001G453300 Sobic003G132600 Sobic003G132600 Sobic001G427000--Sobic003G132600 Sobic010G233800 Sobic010G233800 Sobic001G427000--Sobic010G233800 Sobic003G256200 Sobic003G256200 Sobic001G427000--Sobic003G256200 Sobic003G393800 Sobic003G393800 Sobic001G427000--Sobic003G393800 Sobic003G246400 Sobic003G246400 Sobic001G427000--Sobic003G246400 Sobic001G383900 Sobic001G383900 Sobic001G427000--Sobic001G383900 Sobic001G172300 Sobic001G172300 Sobic003G392000--Sobic001G172300 Sobic002G190800 Sobic002G190800 Sobic003G392000--Sobic002G190800 Sobic001G228300 Sobic001G228300 Sobic003G392000--Sobic001G228300 Sobic003G392000--Sobic001G383900 Sobic010G012900 Sobic010G012900 Sobic003G392000--Sobic010G012900 Sobic003G392000--Sobic001G120000 Sobic001G188600 Sobic001G188600 Sobic003G392000--Sobic001G188600 Sobic007G034500 Sobic007G034500 Sobic003G392000--Sobic007G034500 Sobic004G253800 Sobic004G253800 Sobic003G392000--Sobic004G253800 Sobic002G343700 Sobic002G343700 Sobic004G017200--Sobic002G343700 Sobic004G044000 Sobic004G044000 Sobic004G017200--Sobic004G044000 Sobic004G017200--Sobic001G120000 Sobic004G017200--Sobic001G027600 Sobic003G030900 Sobic003G030900 Sobic004G017200--Sobic003G030900 Sobic004G017200--Sobic001G076500 Sobic004G017200--Sobic001G427000 Sobic006G280050 Sobic006G280050 Sobic004G017200--Sobic006G280050 Sobic003G095000 Sobic003G095000 Sobic004G017200--Sobic003G095000 Sobic006G021800 Sobic006G021800 Sobic004G249600--Sobic006G021800 Sobic004G214400 Sobic004G214400 Sobic004G249600--Sobic004G214400 Sobic006G281066 Sobic006G281066 Sobic004G249600--Sobic006G281066 Sobic003G236300 Sobic003G236300 Sobic004G249600--Sobic003G236300 Sobic004G018100 Sobic004G018100 Sobic004G249600--Sobic004G018100 Sobic004G249600--Sobic004G202600 Sobic010G027200 Sobic010G027200 Sobic004G249600--Sobic010G027200 Sobic004G249600--Sobic001G426300 Sobic001G215300 Sobic001G215300 Sobic004G249600--Sobic001G215300 Sobic001G120000--Sobic004G044000 Sobic004G191200 Sobic004G191200 Sobic001G120000--Sobic004G191200 Sobic001G120000--Sobic002G190800 Sobic006G263800 Sobic006G263800 Sobic001G120000--Sobic006G263800 Sobic002G190100 Sobic002G190100 Sobic001G120000--Sobic002G190100 Sobic001G120000--Sobic004G017200 Sobic002G305700 Sobic002G305700 Sobic001G120000--Sobic002G305700 Sobic001G120000--Sobic001G027600 Sobic001G255400 Sobic001G255400 Sobic001G120000--Sobic001G255400 Sobic010G074200 Sobic010G074200 Sobic009G233800--Sobic010G074200 Sobic006G204100 Sobic006G204100 Sobic009G233800--Sobic006G204100 Sobic001G388400 Sobic001G388400 Sobic009G233800--Sobic001G388400 Sobic004G055600 Sobic004G055600 Sobic009G233800--Sobic004G055600 Sobic003G030400 Sobic003G030400 Sobic009G233800--Sobic003G030400 Sobic010G074100 Sobic010G074100 Sobic009G233800--Sobic010G074100 Sobic009G233800--Sobic009G137000 Sobic001G076200 Sobic001G076200 Sobic009G233800--Sobic001G076200 Sobic010G028000 Sobic010G028000 Sobic009G233800--Sobic010G028000 Sobic001G395300 Sobic001G395300 Sobic009G137000--Sobic001G395300 Sobic002G404900 Sobic002G404900 Sobic009G137000--Sobic002G404900 Sobic003G039300 Sobic003G039300 Sobic009G137000--Sobic003G039300 Sobic002G243650 Sobic002G243650 Sobic009G137000--Sobic002G243650 Sobic009G137000--Sobic009G233800 Sobic003G222600 Sobic003G222600 Sobic009G137000--Sobic003G222600 Sobic006G110200 Sobic006G110200 Sobic009G137000--Sobic006G110200 Sobic006G237100 Sobic006G237100 Sobic009G137000--Sobic006G237100 Sobic009G137000--Sobic003G030400 Sobic001G191000--Sobic006G280050 Sobic001G191000--Sobic003G256200 Sobic001G191000--Sobic003G246400 Sobic001G191000--Sobic001G027600 Sobic001G411300 Sobic001G411300 Sobic001G191000--Sobic001G411300 Sobic001G191000--Sobic002G305700 Sobic001G191000--Sobic001G453300 Sobic001G191000--Sobic004G191200 Sobic006G107600 Sobic006G107600 Sobic001G191000--Sobic006G107600 Sobic004G298100 Sobic004G298100 Sobic004G202600--Sobic004G298100 Sobic004G202600--Sobic003G256200 Sobic004G054500 Sobic004G054500 Sobic004G202600--Sobic004G054500 Sobic004G202600--Sobic003G246400 Sobic004G317900 Sobic004G317900 Sobic004G202600--Sobic004G317900 Sobic004G202600--Sobic001G427000 Sobic004G202600--Sobic001G191000 Sobic004G202600--Sobic001G027600 Sobic004G114800 Sobic004G114800 Sobic004G202600--Sobic004G114800
Octagon: transcription factors


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