Gene annotation
Transcriptome id Sobic.004G202600.1,Sobic.004G202600.2
Synonym Sb04g024890
Functional annotation rhodanese family protein, putative, expressed
UniProt C5XWK1 , A0A1Z5RNC8
Pfam PF00581
Panther DB PTHR12231 PTHR12231:SF150
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G24750 : Rhodanese/Cell cycle control phosphatase superfamily protein
RAP-DB (Rice) LOC_Os02g38240.1 : rhodanese family protein, putative, expressed
MaizeGDB (Corn) Zm00025a021301
Brachypodium KQK00170
Barley -
Wheat TraesCS6B02G239000 , TraesCS6D02G193400 , TraesCS6A02G210200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G298100 50S ribosomal protein L19, chloroplast precursor, putative, expressed K02884: RP-L19, MRPL19, large subunit ribosomal protein L19
2 Sobic.003G256200 ribosomal protein rpS20, putative, expressed K02968: RP-S20, small subunit ribosomal protein S20
3 Sobic.004G054500 porphobilinogen deaminase, chloroplast precursor, putative, expressed K01749: hemC, hydroxymethylbilane synthase
4 Sobic.003G246400 ribosomal protein L7/L12 C-terminal domain containing protein, expressed K02935: RP-L7, MRPL12, large subunit ribosomal protein L7/L12
5 Sobic.004G317900 expressed protein -
6 Sobic.001G427000 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
7 Sobic.001G191000 ribosomal protein, putative, expressed K02988: RP-S5, MRPS5, small subunit ribosomal protein S5
8 Sobic.001G027600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal L18p/L5e family protein, putative, expressed K02881: RP-L18, MRPL18, large subunit ribosomal protein L18
9 Sobic.004G114800 expressed protein -
10 Sobic.006G100900 cytokinin-O-glucosyltransferase 2, putative, expressed -
11 Sobic.009G179800 - -
12 Sobic.003G030900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.003G202300 S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
14 Sobic.001G453300 50S ribosomal protein L15, chloroplast precursor, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
15 Sobic.003G132300 MYB family transcription factor, putative, expressed -
16 Sobic.010G233800 ribosomal protein L24, putative, expressed K02895: RP-L24, MRPL24, large subunit ribosomal protein L24
17 Sobic.001G040000 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
18 Sobic.004G191200 PsbQ-like protein 1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxygen evolving enhancer protein 3, identical, putative, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
19 Sobic.001G203000 thylakoid lumenal protein, putative, expressed -
20 Sobic.009G212000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1


Gene co-expression network
sample Sobic004G202600 Sobic004G202600 Sobic004G298100 Sobic004G298100 Sobic004G202600--Sobic004G298100 Sobic003G256200 Sobic003G256200 Sobic004G202600--Sobic003G256200 Sobic004G054500 Sobic004G054500 Sobic004G202600--Sobic004G054500 Sobic003G246400 Sobic003G246400 Sobic004G202600--Sobic003G246400 Sobic004G317900 Sobic004G317900 Sobic004G202600--Sobic004G317900 Sobic001G427000 Sobic001G427000 Sobic004G202600--Sobic001G427000 Sobic001G191000 Sobic001G191000 Sobic004G202600--Sobic001G191000 Sobic001G027600 Sobic001G027600 Sobic004G202600--Sobic001G027600 Sobic004G114800 Sobic004G114800 Sobic004G202600--Sobic004G114800 Sobic004G298100--Sobic003G256200 Sobic001G391400 Sobic001G391400 Sobic004G298100--Sobic001G391400 Sobic004G298100--Sobic003G246400 Sobic001G453300 Sobic001G453300 Sobic004G298100--Sobic001G453300 Sobic004G116100 Sobic004G116100 Sobic004G298100--Sobic004G116100 Sobic001G240000 Sobic001G240000 Sobic004G298100--Sobic001G240000 Sobic001G527100 Sobic001G527100 Sobic004G298100--Sobic001G527100 Sobic001G040000 Sobic001G040000 Sobic004G298100--Sobic001G040000 Sobic004G298100--Sobic004G317900 Sobic003G256200--Sobic001G453300 Sobic003G256200--Sobic004G298100 Sobic003G256200--Sobic003G246400 Sobic001G411300 Sobic001G411300 Sobic003G256200--Sobic001G411300 Sobic003G256200--Sobic001G191000 Sobic006G107600 Sobic006G107600 Sobic003G256200--Sobic006G107600 Sobic003G256200--Sobic001G427000 Sobic003G256200--Sobic001G391400 Sobic003G256200--Sobic001G240000 Sobic001G203000 Sobic001G203000 Sobic004G054500--Sobic001G203000 Sobic008G051000 Sobic008G051000 Sobic004G054500--Sobic008G051000 Sobic007G143700 Sobic007G143700 Sobic004G054500--Sobic007G143700 Sobic004G054500--Sobic004G317900 Sobic004G054500--Sobic001G040000 Sobic010G255600 Sobic010G255600 Sobic004G054500--Sobic010G255600 Sobic004G335800 Sobic004G335800 Sobic004G054500--Sobic004G335800 Sobic003G157400 Sobic003G157400 Sobic004G054500--Sobic003G157400 Sobic003G386300 Sobic003G386300 Sobic004G054500--Sobic003G386300 Sobic003G246400--Sobic004G317900 Sobic003G246400--Sobic001G411300 Sobic003G246400--Sobic003G256200 Sobic003G246400--Sobic001G453300 Sobic003G328200 Sobic003G328200 Sobic003G246400--Sobic003G328200 Sobic003G246400--Sobic004G298100 Sobic003G246400--Sobic001G191000 Sobic010G233800 Sobic010G233800 Sobic003G246400--Sobic010G233800 Sobic003G393800 Sobic003G393800 Sobic003G246400--Sobic003G393800 Sobic004G317900--Sobic003G246400 Sobic007G185100 Sobic007G185100 Sobic004G317900--Sobic007G185100 Sobic003G295800 Sobic003G295800 Sobic004G317900--Sobic003G295800 Sobic004G317900--Sobic010G233800 Sobic004G317900--Sobic001G027600 Sobic004G317900--Sobic001G453300 Sobic004G317900--Sobic003G328200 Sobic001G017000 Sobic001G017000 Sobic004G317900--Sobic001G017000 Sobic004G317900--Sobic004G054500 Sobic001G076500 Sobic001G076500 Sobic001G427000--Sobic001G076500 Sobic001G427000--Sobic001G027600 Sobic001G427000--Sobic001G453300 Sobic003G132600 Sobic003G132600 Sobic001G427000--Sobic003G132600 Sobic001G427000--Sobic010G233800 Sobic001G427000--Sobic003G256200 Sobic001G427000--Sobic003G393800 Sobic001G427000--Sobic003G246400 Sobic001G383900 Sobic001G383900 Sobic001G427000--Sobic001G383900 Sobic006G280050 Sobic006G280050 Sobic001G191000--Sobic006G280050 Sobic001G191000--Sobic003G256200 Sobic001G191000--Sobic003G246400 Sobic001G191000--Sobic001G027600 Sobic001G191000--Sobic001G411300 Sobic002G305700 Sobic002G305700 Sobic001G191000--Sobic002G305700 Sobic001G191000--Sobic001G453300 Sobic004G191200 Sobic004G191200 Sobic001G191000--Sobic004G191200 Sobic001G191000--Sobic006G107600 Sobic001G027600--Sobic001G453300 Sobic001G027600--Sobic001G427000 Sobic001G027600--Sobic001G076500 Sobic004G044000 Sobic004G044000 Sobic001G027600--Sobic004G044000 Sobic001G027600--Sobic004G317900 Sobic001G027600--Sobic001G383900 Sobic001G027600--Sobic003G295800 Sobic001G027600--Sobic004G191200 Sobic001G027600--Sobic006G280050 Sobic004G114800--Sobic001G203000 Sobic004G234200 Sobic004G234200 Sobic004G114800--Sobic004G234200 Sobic006G100900 Sobic006G100900 Sobic004G114800--Sobic006G100900 Sobic004G114800--Sobic008G051000 Sobic009G091800 Sobic009G091800 Sobic004G114800--Sobic009G091800 Sobic007G116950 Sobic007G116950 Sobic004G114800--Sobic007G116950 Sobic001G382100 Sobic001G382100 Sobic004G114800--Sobic001G382100 Sobic002G328900 Sobic002G328900 Sobic004G114800--Sobic002G328900 Sobic004G238500 Sobic004G238500 Sobic004G114800--Sobic004G238500
Octagon: transcription factors


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