Gene annotation
Transcriptome id Sobic.008G107800.1
Synonym Sb08g016260
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
SWIB/MDM2 domain containing protein, expressed
UniProt C5YP21
Pfam PF02201
Panther DB PTHR13844 PTHR13844:SF8
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G14880 : SWIB/MDM2 domain superfamily protein
RAP-DB (Rice) LOC_Os12g32280.1 : SWIB/MDM2 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a040666
Brachypodium KQJ86612
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.008G107800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G034500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
2 Sobic.001G357200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
3 Sobic.002G190800 expressed protein -
4 Sobic.004G191200 PsbQ-like protein 1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxygen evolving enhancer protein 3, identical, putative, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
5 Sobic.003G202300 S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
6 Sobic.001G191000 ribosomal protein, putative, expressed K02988: RP-S5, MRPS5, small subunit ribosomal protein S5
7 Sobic.001G395300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsClp4 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
8 Sobic.004G168500 peroxiredoxin, putative, expressed K03386: PRDX2_4, peroxiredoxin 2/4
9 Sobic.006G280050 - K02961: RP-S17, MRPS17, small subunit ribosomal protein S17
10 Sobic.010G012900 superoxide dismutase, chloroplast, putative, expressed K04564: superoxide dismutase, Fe-Mn family
11 Sobic.003G392000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PDE312/PTAC10, putative, expressed -
12 Sobic.001G094200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calcium homeostasis regulator CHoR1, putative, expressed -
13 Sobic.001G120000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
14 Sobic.002G370000 gibberellin receptor GID1L2, putative, expressed -
15 Sobic.001G172300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@kinase, pfkB family, putative, expressed -
16 Sobic.004G044000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EMB1303, putative, expressed -
17 Sobic.001G188600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Rf1, mitochondrial precursor, putative, expressed -
18 Sobic.008G030000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@elongation factor P, putative, expressed K02356: elongation factor P
19 Sobic.006G204100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
20 Sobic.006G114300 pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic008G107800 Sobic008G107800 Sobic007G034500 Sobic007G034500 Sobic008G107800--Sobic007G034500 Sobic001G357200 Sobic001G357200 Sobic008G107800--Sobic001G357200 Sobic002G190800 Sobic002G190800 Sobic008G107800--Sobic002G190800 Sobic004G191200 Sobic004G191200 Sobic008G107800--Sobic004G191200 Sobic003G202300 Sobic003G202300 Sobic008G107800--Sobic003G202300 Sobic001G191000 Sobic001G191000 Sobic008G107800--Sobic001G191000 Sobic001G395300 Sobic001G395300 Sobic008G107800--Sobic001G395300 Sobic004G168500 Sobic004G168500 Sobic008G107800--Sobic004G168500 Sobic006G280050 Sobic006G280050 Sobic008G107800--Sobic006G280050 Sobic007G171800 Sobic007G171800 Sobic007G034500--Sobic007G171800 Sobic004G044000 Sobic004G044000 Sobic007G034500--Sobic004G044000 Sobic007G034500--Sobic006G280050 Sobic007G034500--Sobic004G191200 Sobic007G034500--Sobic001G357200 Sobic009G001500 Sobic009G001500 Sobic007G034500--Sobic009G001500 Sobic001G383900 Sobic001G383900 Sobic007G034500--Sobic001G383900 Sobic007G034500--Sobic001G191000 Sobic001G027600 Sobic001G027600 Sobic007G034500--Sobic001G027600 Sobic001G188600 Sobic001G188600 Sobic001G357200--Sobic001G188600 Sobic006G114300 Sobic006G114300 Sobic001G357200--Sobic006G114300 Sobic010G012900 Sobic010G012900 Sobic001G357200--Sobic010G012900 Sobic001G357200--Sobic009G001500 Sobic008G030000 Sobic008G030000 Sobic001G357200--Sobic008G030000 Sobic001G357200--Sobic007G034500 Sobic008G123600 Sobic008G123600 Sobic001G357200--Sobic008G123600 Sobic001G069500 Sobic001G069500 Sobic001G357200--Sobic001G069500 Sobic003G383500 Sobic003G383500 Sobic001G357200--Sobic003G383500 Sobic002G190800--Sobic004G044000 Sobic002G190800--Sobic010G012900 Sobic001G172300 Sobic001G172300 Sobic002G190800--Sobic001G172300 Sobic002G190800--Sobic007G034500 Sobic002G190800--Sobic001G383900 Sobic003G392000 Sobic003G392000 Sobic002G190800--Sobic003G392000 Sobic001G120000 Sobic001G120000 Sobic002G190800--Sobic001G120000 Sobic002G190800--Sobic001G357200 Sobic002G190800--Sobic001G188600 Sobic004G191200--Sobic001G027600 Sobic004G191200--Sobic006G280050 Sobic004G191200--Sobic003G202300 Sobic004G191200--Sobic001G191000 Sobic004G317900 Sobic004G317900 Sobic004G191200--Sobic004G317900 Sobic001G453300 Sobic001G453300 Sobic004G191200--Sobic001G453300 Sobic004G191200--Sobic007G034500 Sobic003G246400 Sobic003G246400 Sobic004G191200--Sobic003G246400 Sobic002G305700 Sobic002G305700 Sobic004G191200--Sobic002G305700 Sobic003G202300--Sobic004G191200 Sobic003G202300--Sobic008G030000 Sobic003G202300--Sobic001G453300 Sobic003G202300--Sobic004G168500 Sobic009G212000 Sobic009G212000 Sobic003G202300--Sobic009G212000 Sobic003G202300--Sobic001G027600 Sobic001G094200 Sobic001G094200 Sobic003G202300--Sobic001G094200 Sobic003G202300--Sobic004G317900 Sobic007G185100 Sobic007G185100 Sobic003G202300--Sobic007G185100 Sobic001G191000--Sobic006G280050 Sobic003G256200 Sobic003G256200 Sobic001G191000--Sobic003G256200 Sobic001G191000--Sobic003G246400 Sobic001G191000--Sobic001G027600 Sobic001G411300 Sobic001G411300 Sobic001G191000--Sobic001G411300 Sobic001G191000--Sobic002G305700 Sobic001G191000--Sobic001G453300 Sobic001G191000--Sobic004G191200 Sobic006G107600 Sobic006G107600 Sobic001G191000--Sobic006G107600 Sobic009G137000 Sobic009G137000 Sobic001G395300--Sobic009G137000 Sobic002G404900 Sobic002G404900 Sobic001G395300--Sobic002G404900 Sobic001G228300 Sobic001G228300 Sobic001G395300--Sobic001G228300 Sobic006G237100 Sobic006G237100 Sobic001G395300--Sobic006G237100 Sobic006G263800 Sobic006G263800 Sobic001G395300--Sobic006G263800 Sobic002G140000 Sobic002G140000 Sobic001G395300--Sobic002G140000 Sobic006G204100 Sobic006G204100 Sobic001G395300--Sobic006G204100 Sobic007G116100 Sobic007G116100 Sobic001G395300--Sobic007G116100 Sobic010G027200 Sobic010G027200 Sobic001G395300--Sobic010G027200 Sobic004G168500--Sobic001G453300 Sobic001G427000 Sobic001G427000 Sobic004G168500--Sobic001G427000 Sobic004G168500--Sobic003G246400 Sobic001G076500 Sobic001G076500 Sobic004G168500--Sobic001G076500 Sobic004G168500--Sobic001G027600 Sobic010G233800 Sobic010G233800 Sobic004G168500--Sobic010G233800 Sobic004G168500--Sobic003G256200 Sobic004G168500--Sobic001G383900 Sobic004G168500--Sobic008G030000 Sobic006G280050--Sobic001G191000 Sobic006G280050--Sobic001G027600 Sobic006G280050--Sobic003G246400 Sobic006G280050--Sobic004G044000 Sobic006G280050--Sobic004G191200 Sobic006G280050--Sobic004G317900 Sobic001G017000 Sobic001G017000 Sobic006G280050--Sobic001G017000 Sobic006G280050--Sobic001G076500 Sobic006G280050--Sobic001G453300
Octagon: transcription factors


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