Gene annotation
Transcriptome id Sobic.004G017300.1
Synonym ZIP4, Sb04g001630
Functional annotation adaptor complexes medium subunit family domain containing protein, expressed
UniProt C5XSZ4
Pfam PF00928
Panther DB PTHR10529
NCBI CDD -
KEGG Orthology K12398; AP-3 complex subunit mu
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G56590 : Clathrin adaptor complexes medium subunit family protein
RAP-DB (Rice) LOC_Os05g31780.1 : adaptor complexes medium subunit family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a014677 , Zm00025a035032
Brachypodium KQK06517 , KQK06519 , KQK06518
Barley HORVU1Hr1G057140.2 , HORVU1Hr1G057140.1 , HORVU1Hr1G057140.6 , HORVU1Hr1G057140.7 , HORVU1Hr1G057140.4 , HORVU1Hr1G057140.5
Wheat TraesCS1A02G240000 , TraesCS1A02G240000 , TraesCS1D02G240100 , TraesCS1D02G240100 , TraesCS1B02G252100 , TraesCS1B02G252100
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G017300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G154100 mRNA cap guanine-N7 methyltransferase 2, putative, expressed K00565: mRNA (guanine-N7-)-methyltransferase
2 Sobic.001G393700 expressed protein -
3 Sobic.001G369000 adapitin protein, putative, expressed K12392: AP-1 complex subunit beta-1
4 Sobic.003G006400 metallo-beta-lactamase family protein, putative, expressed K00784: ribonuclease Z
5 Sobic.002G111600 expressed protein -
6 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
7 Sobic.006G166200 Alg9-like mannosyltransferase protein, putative, expressed K03847: alpha-1,6-mannosyltransferase
8 Sobic.008G124800 expressed protein -
9 Sobic.001G335900 vacuolar protein sorting-associated protein 52, putative, expressed -
10 Sobic.001G426600 SH3 domain containing protein, expressed -
11 Sobic.008G164600 expressed protein -
12 Sobic.006G002800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K15332: tRNA (uracil-5-)-methyltransferase
13 Sobic.003G099300 expressed protein K18749: LSM14, RAP55, protein LSM14
14 Sobic.006G056200 transport protein particle component, Bet3, domain containing protein, expressed -
15 Sobic.008G103300 vacuolar protein sorting-associated protein 26, putative, expressed K18466: vacuolar protein sorting-associated protein 26
16 Sobic.004G246100 nicalin, putative, expressed K06171: nicastrin
17 Sobic.006G138000 expressed protein -
18 Sobic.001G474400 conserved oligomeric Golgi complex component 8, putative, expressed -
19 Sobic.003G187500 ATP-binding region, ATPase-like domain containing protein, expressed -
20 Sobic.002G308500 peptide-Nasparagine amidase, putative, expressed K01456: E3.5.1.52, NGLY1, peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase


Gene co-expression network
sample Sobic004G017300 Sobic004G017300 Sobic006G154100 Sobic006G154100 Sobic004G017300--Sobic006G154100 Sobic001G393700 Sobic001G393700 Sobic004G017300--Sobic001G393700 Sobic001G369000 Sobic001G369000 Sobic004G017300--Sobic001G369000 Sobic003G006400 Sobic003G006400 Sobic004G017300--Sobic003G006400 Sobic002G111600 Sobic002G111600 Sobic004G017300--Sobic002G111600 Sobic001G145400 Sobic001G145400 Sobic004G017300--Sobic001G145400 Sobic006G166200 Sobic006G166200 Sobic004G017300--Sobic006G166200 Sobic008G124800 Sobic008G124800 Sobic004G017300--Sobic008G124800 Sobic001G335900 Sobic001G335900 Sobic004G017300--Sobic001G335900 Sobic002G127200 Sobic002G127200 Sobic006G154100--Sobic002G127200 Sobic001G034500 Sobic001G034500 Sobic006G154100--Sobic001G034500 Sobic005G114500 Sobic005G114500 Sobic006G154100--Sobic005G114500 Sobic001G097500 Sobic001G097500 Sobic006G154100--Sobic001G097500 Sobic006G270600 Sobic006G270600 Sobic006G154100--Sobic006G270600 Sobic006G002800 Sobic006G002800 Sobic006G154100--Sobic006G002800 Sobic003G230600 Sobic003G230600 Sobic006G154100--Sobic003G230600 Sobic006G154100--Sobic004G017300 Sobic006G154100--Sobic003G006400 Sobic002G430300 Sobic002G430300 Sobic001G393700--Sobic002G430300 Sobic001G393700--Sobic001G145400 Sobic010G099800 Sobic010G099800 Sobic001G393700--Sobic010G099800 Sobic005G114800 Sobic005G114800 Sobic001G393700--Sobic005G114800 Sobic006G224800 Sobic006G224800 Sobic001G393700--Sobic006G224800 Sobic001G103300 Sobic001G103300 Sobic001G393700--Sobic001G103300 Sobic003G405500 Sobic003G405500 Sobic001G393700--Sobic003G405500 Sobic003G240700 Sobic003G240700 Sobic001G393700--Sobic003G240700 Sobic009G045200 Sobic009G045200 Sobic001G393700--Sobic009G045200 Sobic004G039600 Sobic004G039600 Sobic001G369000--Sobic004G039600 Sobic001G369000--Sobic001G335900 Sobic007G120500 Sobic007G120500 Sobic001G369000--Sobic007G120500 Sobic001G369000--Sobic003G240700 Sobic006G163800 Sobic006G163800 Sobic001G369000--Sobic006G163800 Sobic006G138000 Sobic006G138000 Sobic001G369000--Sobic006G138000 Sobic009G049400 Sobic009G049400 Sobic001G369000--Sobic009G049400 Sobic001G426600 Sobic001G426600 Sobic001G369000--Sobic001G426600 Sobic009G229600 Sobic009G229600 Sobic001G369000--Sobic009G229600 Sobic006G208500 Sobic006G208500 Sobic003G006400--Sobic006G208500 Sobic006G200700 Sobic006G200700 Sobic003G006400--Sobic006G200700 Sobic002G275600 Sobic002G275600 Sobic003G006400--Sobic002G275600 Sobic003G006400--Sobic001G369000 Sobic003G006400--Sobic006G138000 Sobic010G151900 Sobic010G151900 Sobic003G006400--Sobic010G151900 Sobic003G006400--Sobic001G145400 Sobic006G077200 Sobic006G077200 Sobic003G006400--Sobic006G077200 Sobic010G007100 Sobic010G007100 Sobic003G006400--Sobic010G007100 Sobic001G382600 Sobic001G382600 Sobic002G111600--Sobic001G382600 Sobic007G132100 Sobic007G132100 Sobic002G111600--Sobic007G132100 Sobic007G225100 Sobic007G225100 Sobic002G111600--Sobic007G225100 Sobic008G103300 Sobic008G103300 Sobic002G111600--Sobic008G103300 Sobic001G142100 Sobic001G142100 Sobic002G111600--Sobic001G142100 Sobic008G164600 Sobic008G164600 Sobic002G111600--Sobic008G164600 Sobic006G240100 Sobic006G240100 Sobic002G111600--Sobic006G240100 Sobic009G088000 Sobic009G088000 Sobic002G111600--Sobic009G088000 Sobic010G118000 Sobic010G118000 Sobic002G111600--Sobic010G118000 Sobic006G086600 Sobic006G086600 Sobic001G145400--Sobic006G086600 Sobic001G035200 Sobic001G035200 Sobic001G145400--Sobic001G035200 Sobic010G059500 Sobic010G059500 Sobic001G145400--Sobic010G059500 Sobic001G145400--Sobic006G077200 Sobic001G145400--Sobic003G405500 Sobic001G145400--Sobic010G007100 Sobic004G340400 Sobic004G340400 Sobic001G145400--Sobic004G340400 Sobic009G084900 Sobic009G084900 Sobic001G145400--Sobic009G084900 Sobic004G085000 Sobic004G085000 Sobic001G145400--Sobic004G085000 Sobic005G133800 Sobic005G133800 Sobic006G166200--Sobic005G133800 Sobic004G053500 Sobic004G053500 Sobic006G166200--Sobic004G053500 Sobic006G166200--Sobic008G124800 Sobic006G166200--Sobic003G405500 Sobic006G166200--Sobic006G224800 Sobic006G166200--Sobic001G145400 Sobic006G166200--Sobic010G059500 Sobic002G235200 Sobic002G235200 Sobic006G166200--Sobic002G235200 Sobic009G201700 Sobic009G201700 Sobic006G166200--Sobic009G201700 Sobic002G340900 Sobic002G340900 Sobic008G124800--Sobic002G340900 Sobic006G021700 Sobic006G021700 Sobic008G124800--Sobic006G021700 Sobic007G019300 Sobic007G019300 Sobic008G124800--Sobic007G019300 Sobic004G322400 Sobic004G322400 Sobic008G124800--Sobic004G322400 Sobic001G404600 Sobic001G404600 Sobic008G124800--Sobic001G404600 Sobic003G233400 Sobic003G233400 Sobic008G124800--Sobic003G233400 Sobic002G308500 Sobic002G308500 Sobic008G124800--Sobic002G308500 Sobic008G124800--Sobic003G405500 Sobic002G401500 Sobic002G401500 Sobic008G124800--Sobic002G401500 Sobic001G335900--Sobic001G369000 Sobic001G335900--Sobic006G138000 Sobic001G518400 Sobic001G518400 Sobic001G335900--Sobic001G518400 Sobic001G170100 Sobic001G170100 Sobic001G335900--Sobic001G170100 Sobic001G335900--Sobic003G240700 Sobic001G335900--Sobic009G229600 Sobic001G335900--Sobic009G049400 Sobic001G335900--Sobic007G120500 SobicK004100 SobicK004100 Sobic001G335900--SobicK004100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.