Gene annotation
Transcriptome id Sobic.004G269900.3,Sobic.004G269900.2,Sobic.004G269900.1
Synonym AtGRF5, GRF5, Sb04g030770
Functional annotation "GS2/GL2(Ortholog in rice:Che et al., 2015 (PubMedID : 31659888)
growth-regulating factor, putative, expressed
UniProt A0A1Z5RQ29 , C5Y0D6 , A0A1Z5RQ84
Pfam PF08879 PF08880 PF08879
Panther DB PTHR31602 PTHR31602:SF13
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006351; transcription, DNA-templated GO:0005634nucleus GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus GO:0005524ATP binding GO:0006351transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT4G37740 : growth-regulating factor 5,growth-regulating factor 2
RAP-DB (Rice) LOC_Os02g47280.2 : growth-regulating factor, putative, expressed
MaizeGDB (Corn) Zm00025a056942 , Zm00025a050243 , Zm00025a042463 , Zm00025a021685 , Zm00025a041311 , Zm00025a032451 , Zm00025a009932
Brachypodium KQJ84396 , KQK19811 , PNT76252 , PNT76253 , KQK00900
Barley HORVU0Hr1G016610.1 , HORVU0Hr1G016610.2 , HORVU0Hr1G016610.3 , HORVU4Hr1G010080.7 , HORVU4Hr1G010080.6 , HORVU4Hr1G010080.5 , HORVU4Hr1G010080.4 , HORVU4Hr1G010080.3 , HORVU4Hr1G010080.2 , HORVU4Hr1G010080.9 , HORVU4Hr1G010080.8 , HORVU6Hr1G068370.10 , HORVU6Hr1G068370.11 , HORVU0Hr1G026650.1 , HORVU6Hr1G068370.8 , HORVU6Hr1G068370.9 , HORVU6Hr1G068370.4 , HORVU6Hr1G068370.5 , HORVU6Hr1G068370.6 , HORVU6Hr1G068370.7 , HORVU6Hr1G068370.1 , HORVU6Hr1G068370.2 , HORVU6Hr1G068370.3 , HORVU7Hr1G008680.13 , HORVU7Hr1G008680.12 , HORVU7Hr1G008680.11 , HORVU7Hr1G008680.10 , HORVU7Hr1G008680.14 , HORVU2Hr1G101770.18 , HORVU2Hr1G101770.19 , HORVU2Hr1G101770.14 , HORVU2Hr1G101770.15 , HORVU2Hr1G101770.16 , HORVU2Hr1G101770.17 , HORVU2Hr1G101770.10 , HORVU2Hr1G101770.11 , HORVU2Hr1G101770.12 , HORVU2Hr1G101770.13 , HORVU4Hr1G010080.12 , HORVU4Hr1G010080.11 , HORVU4Hr1G010080.10 , HORVU2Hr1G101770.6 , HORVU2Hr1G101770.7 , HORVU2Hr1G101770.4 , HORVU2Hr1G101770.3 , HORVU2Hr1G101770.8 , HORVU2Hr1G101770.9 , HORVU7Hr1G008680.9 , HORVU7Hr1G008680.8 , HORVU7Hr1G008680.3 , HORVU7Hr1G008680.2 , HORVU7Hr1G008680.1 , HORVU7Hr1G008680.7 , HORVU7Hr1G008680.6 , HORVU7Hr1G008680.5 , HORVU7Hr1G008680.4 , HORVU7Hr1G034610.5 , HORVU7Hr1G034610.4 , HORVU7Hr1G034610.3 , HORVU7Hr1G034610.2 , HORVU7Hr1G034610.1 , HORVU0Hr1G016590.2 , HORVU0Hr1G016590.1
Wheat TraesCS4A02G255000 , TraesCS2A02G435100 , TraesCS2B02G458400 , TraesCS6D02G245300 , TraesCS7A02G049100 , TraesCS7A02G049100 , TraesCS2D02G435200 , TraesCS4B02G060000 , TraesCS6B02G296900 , TraesCS4D02G059600 , TraesCS7D02G044200 , TraesCS6A02G269600 , TraesCS4A02G434900
Populus PNT07290 , PNT31060


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cDNA sequences
Sobic.004G269900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G022600 AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed K09285: OVM, AP2-like factor, ANT lineage
2 Sobic.006G098400 alpha/beta hydrolase fold, putative, expressed -
3 Sobic.002G189300 cytochrome P450, putative, expressed -
4 Sobic.003G037200 GDSL-like lipase/acylhydrolase, putative, expressed -
5 Sobic.009G233600 OsFBLD9 - F-box, LRR and FBD domain containing protein, expressed -
6 Sobic.001G079600 HLS, putative, expressed -
7 Sobic.006G260600 OTU-like cysteine protease family protein, putative, expressed K13717: OTU domain-containing protein 3
8 Sobic.002G356700 OsFBD6 - F-box and FBD domain containing protein, expressed -
9 Sobic.010G145200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@CPuORF31 - conserved peptide uORF-containing transcript, expressed -
10 Sobic.001G403800 expressed protein -
11 Sobic.001G404000 glucan endo-1,3-beta-glucosidase 9 precursor, putative, expressed -
12 Sobic.002G052500 - -
13 Sobic.005G188400 remorin C-terminal domain containing protein, putative, expressed -
14 Sobic.008G127200 expressed protein -
15 Sobic.006G208050 - -
16 Sobic.004G356600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.009G229100 expressed protein -
18 Sobic.002G004400 expressed protein -
19 Sobic.004G205200 PPR repeat containing protein, expressed -
20 Sobic.003G047300 phototropic-responsive NPH3 family protein, putative, expressed -


Gene co-expression network
sample Sobic004G269900 Sobic004G269900 Sobic002G022600 Sobic002G022600 Sobic004G269900--Sobic002G022600 Sobic006G098400 Sobic006G098400 Sobic004G269900--Sobic006G098400 Sobic002G189300 Sobic002G189300 Sobic004G269900--Sobic002G189300 Sobic003G037200 Sobic003G037200 Sobic004G269900--Sobic003G037200 Sobic009G233600 Sobic009G233600 Sobic004G269900--Sobic009G233600 Sobic001G079600 Sobic001G079600 Sobic004G269900--Sobic001G079600 Sobic006G260600 Sobic006G260600 Sobic004G269900--Sobic006G260600 Sobic002G356700 Sobic002G356700 Sobic004G269900--Sobic002G356700 Sobic010G145200 Sobic010G145200 Sobic004G269900--Sobic010G145200 Sobic002G022600--Sobic004G269900 Sobic002G022600--Sobic006G098400 Sobic002G022600--Sobic002G189300 Sobic003G047300 Sobic003G047300 Sobic002G022600--Sobic003G047300 Sobic002G022600--Sobic001G079600 Sobic002G022600--Sobic009G233600 Sobic002G022600--Sobic010G145200 Sobic008G127200 Sobic008G127200 Sobic002G022600--Sobic008G127200 Sobic005G188400 Sobic005G188400 Sobic002G022600--Sobic005G188400 Sobic006G098400--Sobic002G022600 Sobic006G098400--Sobic004G269900 Sobic006G098400--Sobic002G189300 Sobic001G403800 Sobic001G403800 Sobic006G098400--Sobic001G403800 Sobic006G098400--Sobic003G037200 Sobic006G208050 Sobic006G208050 Sobic006G098400--Sobic006G208050 Sobic001G404000 Sobic001G404000 Sobic006G098400--Sobic001G404000 Sobic006G098400--Sobic001G079600 Sobic006G098400--Sobic003G047300 Sobic002G189300--Sobic001G403800 Sobic002G189300--Sobic004G269900 Sobic002G189300--Sobic002G022600 Sobic002G189300--Sobic006G098400 Sobic003G271300 Sobic003G271300 Sobic002G189300--Sobic003G271300 Sobic010G074960 Sobic010G074960 Sobic002G189300--Sobic010G074960 Sobic008G042100 Sobic008G042100 Sobic002G189300--Sobic008G042100 Sobic002G189300--Sobic008G127200 Sobic009G194600 Sobic009G194600 Sobic002G189300--Sobic009G194600 Sobic003G037200--Sobic004G269900 Sobic003G037200--Sobic006G098400 Sobic003G037200--Sobic002G022600 Sobic001G023900 Sobic001G023900 Sobic003G037200--Sobic001G023900 Sobic003G037200--Sobic001G404000 Sobic003G037200--Sobic001G079600 Sobic006G135800 Sobic006G135800 Sobic003G037200--Sobic006G135800 Sobic002G375900 Sobic002G375900 Sobic003G037200--Sobic002G375900 Sobic001G193900 Sobic001G193900 Sobic003G037200--Sobic001G193900 Sobic009G233600--Sobic002G356700 Sobic009G229100 Sobic009G229100 Sobic009G233600--Sobic009G229100 Sobic003G364700 Sobic003G364700 Sobic009G233600--Sobic003G364700 Sobic001G511200 Sobic001G511200 Sobic009G233600--Sobic001G511200 Sobic004G356600 Sobic004G356600 Sobic009G233600--Sobic004G356600 Sobic005G022400 Sobic005G022400 Sobic009G233600--Sobic005G022400 Sobic009G233600--Sobic010G145200 Sobic003G178200 Sobic003G178200 Sobic009G233600--Sobic003G178200 Sobic002G237700 Sobic002G237700 Sobic009G233600--Sobic002G237700 Sobic001G079600--Sobic004G269900 Sobic001G079600--Sobic002G022600 Sobic001G079600--Sobic009G233600 Sobic001G079600--Sobic005G188400 Sobic003G336400 Sobic003G336400 Sobic001G079600--Sobic003G336400 Sobic001G177200 Sobic001G177200 Sobic001G079600--Sobic001G177200 Sobic001G079600--Sobic002G189300 Sobic001G079600--Sobic006G098400 Sobic001G079600--Sobic009G229100 Sobic002G034400 Sobic002G034400 Sobic006G260600--Sobic002G034400 Sobic002G052500 Sobic002G052500 Sobic006G260600--Sobic002G052500 Sobic006G260600--Sobic002G356700 Sobic006G260600--Sobic009G233600 Sobic006G260600--Sobic004G356600 Sobic003G051800 Sobic003G051800 Sobic006G260600--Sobic003G051800 Sobic002G004400 Sobic002G004400 Sobic006G260600--Sobic002G004400 Sobic006G090201 Sobic006G090201 Sobic006G260600--Sobic006G090201 Sobic007G085350 Sobic007G085350 Sobic006G260600--Sobic007G085350 Sobic002G356700--Sobic009G233600 Sobic002G356700--Sobic003G178200 Sobic003G245700 Sobic003G245700 Sobic002G356700--Sobic003G245700 Sobic002G356700--Sobic006G090201 Sobic002G356700--Sobic005G022400 Sobic001G361500 Sobic001G361500 Sobic002G356700--Sobic001G361500 Sobic008G023500 Sobic008G023500 Sobic002G356700--Sobic008G023500 Sobic009G164200 Sobic009G164200 Sobic002G356700--Sobic009G164200 Sobic007G072901 Sobic007G072901 Sobic002G356700--Sobic007G072901 Sobic010G145200--Sobic002G004400 Sobic010G145200--Sobic003G178200 Sobic010G145200--Sobic007G072901 Sobic010G145200--Sobic003G245700 Sobic010G145200--Sobic002G356700 Sobic005G189400 Sobic005G189400 Sobic010G145200--Sobic005G189400 Sobic010G145200--Sobic001G361500 Sobic010G145200--Sobic006G090201 Sobic003G343100 Sobic003G343100 Sobic010G145200--Sobic003G343100
Octagon: transcription factors


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