Gene annotation
Transcriptome id Sobic.003G010500.2,Sobic.003G010500.1
Synonym PERK1, ATPERK1
Functional annotation protein kinase domain containing protein, expressed
UniProt A0A1W0VVD0 , A0A1W0VVE9
Pfam PF07714
Panther DB PTHR27001 PTHR27001:SF199
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT3G24550 : Protein kinase superfamily protein,proline extensin-like receptor kinase 1
RAP-DB (Rice) LOC_Os01g12720.1 : protein kinase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a037572 , Zm00025a022840
Brachypodium KQK03391 , KQK07015 , KQK07014 , PNT71607
Barley HORVU3Hr1G030900.3 , HORVU3Hr1G030900.2 , HORVU3Hr1G030900.1 , HORVU3Hr1G030900.7 , HORVU3Hr1G030900.6 , HORVU3Hr1G030900.5 , HORVU3Hr1G030900.4 , HORVU3Hr1G030900.8 , HORVU1Hr1G030140.2 , HORVU1Hr1G030140.7 , HORVU1Hr1G030140.3 , HORVU1Hr1G030140.5 , HORVU1Hr1G030140.4 , HORVU1Hr1G030140.6
Wheat TraesCS1B02G147000 , TraesCS1B02G147000 , TraesCS1D02G126300 , TraesCS3D02G160000 , TraesCS3A02G152200 , TraesCS3B02G179300 , TraesCS1A02G127900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G111600 CRP7 - Cysteine-rich family protein precursor, expressed -
2 Sobic.005G007900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2c, putative, expressed -
3 Sobic.006G146900 pentatricopeptide repeat domain containing protein, putative, expressed -
4 Sobic.002G237700 expressed protein -
5 Sobic.003G231900 mitotic checkpoint protein, putative, expressed K14298: RAE1, mRNA export factor
6 Sobic.003G400600 BHLH transcription factor, putative, expressed -
7 Sobic.002G120200 pentatricopeptide, putative, expressed -
8 Sobic.003G023666 - -
9 Sobic.005G112632 - -
10 Sobic.006G271100 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
11 Sobic.002G154300 serine/threonine-protein kinase receptor precursor, putative, expressed -
12 Sobic.002G206400 similar to Os09g0423800 protein(PubMedID : 29862293)@AP2 domain containing protein, expressed K09285: OVM, AP2-like factor, ANT lineage
13 Sobic.002G408500 B-box (BBX) protein(PubMedID : 30626335)@CCT/B-box zinc finger protein, putative, expressed -
14 Sobic.003G273800 IQ calmodulin-binding motif domain containing protein, expressed -
15 Sobic.006G260600 OTU-like cysteine protease family protein, putative, expressed K13717: OTU domain-containing protein 3
16 Sobic.001G534300 Trihelix Family(PubMedID : 24864043)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@AT-GTL1, putative, expressed -
17 Sobic.003G098500 - -
18 Sobic.004G077100 Mad3/BUB1 homology region 1 domain containing protein, expressed K02178: checkpoint serine/threonine-protein kinase
19 Sobic.001G511200 expressed protein -
20 Sobic.004G246500 ATMAP70 protein, putative, expressed -


Gene co-expression network
sample Sobic003G010500 Sobic003G010500 Sobic005G111600 Sobic005G111600 Sobic003G010500--Sobic005G111600 Sobic005G007900 Sobic005G007900 Sobic003G010500--Sobic005G007900 Sobic006G146900 Sobic006G146900 Sobic003G010500--Sobic006G146900 Sobic002G237700 Sobic002G237700 Sobic003G010500--Sobic002G237700 Sobic003G231900 Sobic003G231900 Sobic003G010500--Sobic003G231900 Sobic003G400600 Sobic003G400600 Sobic003G010500--Sobic003G400600 Sobic002G120200 Sobic002G120200 Sobic003G010500--Sobic002G120200 Sobic003G023666 Sobic003G023666 Sobic003G010500--Sobic003G023666 Sobic005G112632 Sobic005G112632 Sobic003G010500--Sobic005G112632 Sobic009G070000 Sobic009G070000 Sobic005G111600--Sobic009G070000 Sobic008G137500 Sobic008G137500 Sobic005G111600--Sobic008G137500 Sobic003G047300 Sobic003G047300 Sobic005G111600--Sobic003G047300 Sobic006G271100 Sobic006G271100 Sobic005G111600--Sobic006G271100 Sobic009G229100 Sobic009G229100 Sobic005G111600--Sobic009G229100 Sobic006G228100 Sobic006G228100 Sobic005G111600--Sobic006G228100 Sobic002G408500 Sobic002G408500 Sobic005G111600--Sobic002G408500 Sobic002G206400 Sobic002G206400 Sobic005G111600--Sobic002G206400 Sobic004G296100 Sobic004G296100 Sobic005G111600--Sobic004G296100 Sobic003G142100 Sobic003G142100 Sobic005G007900--Sobic003G142100 Sobic004G343700 Sobic004G343700 Sobic005G007900--Sobic004G343700 Sobic003G308100 Sobic003G308100 Sobic005G007900--Sobic003G308100 Sobic006G234300 Sobic006G234300 Sobic005G007900--Sobic006G234300 Sobic002G154300 Sobic002G154300 Sobic005G007900--Sobic002G154300 Sobic003G383700 Sobic003G383700 Sobic005G007900--Sobic003G383700 Sobic003G283400 Sobic003G283400 Sobic005G007900--Sobic003G283400 Sobic003G365800 Sobic003G365800 Sobic005G007900--Sobic003G365800 Sobic010G156100 Sobic010G156100 Sobic005G007900--Sobic010G156100 Sobic006G146900--Sobic002G120200 Sobic002G200500 Sobic002G200500 Sobic006G146900--Sobic002G200500 Sobic006G146900--Sobic002G237700 Sobic006G240300 Sobic006G240300 Sobic006G146900--Sobic006G240300 Sobic003G182100 Sobic003G182100 Sobic006G146900--Sobic003G182100 Sobic001G404000 Sobic001G404000 Sobic006G146900--Sobic001G404000 Sobic001G362400 Sobic001G362400 Sobic006G146900--Sobic001G362400 Sobic001G193900 Sobic001G193900 Sobic006G146900--Sobic001G193900 Sobic009G233600 Sobic009G233600 Sobic006G146900--Sobic009G233600 Sobic003G273800 Sobic003G273800 Sobic002G237700--Sobic003G273800 Sobic002G237700--Sobic009G233600 Sobic006G069500 Sobic006G069500 Sobic002G237700--Sobic006G069500 Sobic001G511200 Sobic001G511200 Sobic002G237700--Sobic001G511200 Sobic002G237700--Sobic006G240300 Sobic005G188400 Sobic005G188400 Sobic002G237700--Sobic005G188400 Sobic002G356700 Sobic002G356700 Sobic002G237700--Sobic002G356700 Sobic004G180400 Sobic004G180400 Sobic002G237700--Sobic004G180400 Sobic002G237700--Sobic009G229100 Sobic003G231900--Sobic003G273800 Sobic003G231900--Sobic001G404000 Sobic003G231900--Sobic002G237700 Sobic003G231900--Sobic001G511200 Sobic003G231900--Sobic009G233600 Sobic001G374800 Sobic001G374800 Sobic003G231900--Sobic001G374800 Sobic009G178900 Sobic009G178900 Sobic003G231900--Sobic009G178900 Sobic008G127200 Sobic008G127200 Sobic003G231900--Sobic008G127200 Sobic010G271000 Sobic010G271000 Sobic003G231900--Sobic010G271000 Sobic001G451800 Sobic001G451800 Sobic003G400600--Sobic001G451800 Sobic003G277200 Sobic003G277200 Sobic003G400600--Sobic003G277200 Sobic001G437500 Sobic001G437500 Sobic003G400600--Sobic001G437500 Sobic008G039800 Sobic008G039800 Sobic003G400600--Sobic008G039800 Sobic002G142500 Sobic002G142500 Sobic003G400600--Sobic002G142500 Sobic002G276600 Sobic002G276600 Sobic003G400600--Sobic002G276600 Sobic003G017500 Sobic003G017500 Sobic003G400600--Sobic003G017500 Sobic002G246000 Sobic002G246000 Sobic003G400600--Sobic002G246000 Sobic002G045200 Sobic002G045200 Sobic003G400600--Sobic002G045200 Sobic002G120200--Sobic006G146900 Sobic002G034400 Sobic002G034400 Sobic002G120200--Sobic002G034400 Sobic006G260600 Sobic006G260600 Sobic002G120200--Sobic006G260600 Sobic001G451200 Sobic001G451200 Sobic002G120200--Sobic001G451200 Sobic002G120200--Sobic002G200500 Sobic004G356600 Sobic004G356600 Sobic002G120200--Sobic004G356600 Sobic002G120200--Sobic009G233600 Sobic006G073150 Sobic006G073150 Sobic002G120200--Sobic006G073150 Sobic002G120200--Sobic006G271100 Sobic001G430000 Sobic001G430000 Sobic003G023666--Sobic001G430000 Sobic008G037200 Sobic008G037200 Sobic003G023666--Sobic008G037200 Sobic004G049800 Sobic004G049800 Sobic003G023666--Sobic004G049800 Sobic003G184500 Sobic003G184500 Sobic003G023666--Sobic003G184500 Sobic007G224800 Sobic007G224800 Sobic003G023666--Sobic007G224800 Sobic003G023666--Sobic001G511200 Sobic004G077100 Sobic004G077100 Sobic003G023666--Sobic004G077100 Sobic003G023666--Sobic006G069500 Sobic003G023666--Sobic003G273800 Sobic001G531000 Sobic001G531000 Sobic005G112632--Sobic001G531000 Sobic005G114600 Sobic005G114600 Sobic005G112632--Sobic005G114600 Sobic003G328400 Sobic003G328400 Sobic005G112632--Sobic003G328400 Sobic004G357900 Sobic004G357900 Sobic005G112632--Sobic004G357900 Sobic007G163600 Sobic007G163600 Sobic005G112632--Sobic007G163600 Sobic005G112632--Sobic003G010500 Sobic005G112632--Sobic004G296100 Sobic005G112632--Sobic006G073150 Sobic005G112632--Sobic006G146900
Octagon: transcription factors


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