Gene annotation
Transcriptome id Sobic.005G007900.1
Synonym Sb05g000750
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
protein phosphatase 2c, putative, expressed
UniProt C5Y322
Pfam PF00481
Panther DB PTHR13832 PTHR13832:SF199
NCBI CDD KOG0698; Serine/threonine protein phosphatase
KEGG Orthology -
Gene Ontology GO:0003824; catalytic activity GO:0006470protein dephosphorylation GO:0004722protein serine/threonine phosphatase activity


Orthologs (automatic annotation)
TAIR AT3G02750 : Protein phosphatase 2C family protein
RAP-DB (Rice) LOC_Os12g01770.1 : protein phosphatase 2c, putative, expressed
MaizeGDB (Corn) Zm00025a013202
Brachypodium -
Barley -
Wheat TraesCS5B02G149300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G142100 beta-D-xylosidase, putative, expressed -
2 Sobic.004G343700 serine/threonine-protein kinase, putative, expressed -
3 Sobic.003G308100 CSLC1 - cellulose synthase-like family C, expressed -
4 Sobic.006G234300 expressed protein -
5 Sobic.002G154300 serine/threonine-protein kinase receptor precursor, putative, expressed -
6 Sobic.003G383700 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
7 Sobic.003G283400 GDSL-like lipase/acylhydrolase, putative, expressed -
8 Sobic.003G365800 expressed protein -
9 Sobic.010G156100 GDSL-like lipase/acylhydrolase, putative, expressed -
10 Sobic.003G010500 protein kinase domain containing protein, expressed -
11 Sobic.006G111100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@pathogenesis-related Bet v I family protein, putative, expressed -
12 Sobic.006G014400 pectate lyase precursor, putative, expressed K01728: pectate lyase
13 Sobic.005G108225 - -
14 Sobic.001G081700 SWIB/MDM2 domain containing protein, expressed -
15 Sobic.004G246500 ATMAP70 protein, putative, expressed -
16 Sobic.005G020100 CDC45B - Putative DNA replication initiation protein, expressed K06628: cell division control protein 45
17 Sobic.007G128100 expressed protein -
18 Sobic.007G000700 choline transporter-related, putative, expressed K15377: solute carrier family 44 (choline transporter-like protein), member 2/4/5
19 Sobic.003G239600 chloroplast unusual positioning protein, putative, expressed -
20 Sobic.007G116800 BURP domain containing protein, expressed -


Gene co-expression network
sample Sobic005G007900 Sobic005G007900 Sobic003G142100 Sobic003G142100 Sobic005G007900--Sobic003G142100 Sobic004G343700 Sobic004G343700 Sobic005G007900--Sobic004G343700 Sobic003G308100 Sobic003G308100 Sobic005G007900--Sobic003G308100 Sobic006G234300 Sobic006G234300 Sobic005G007900--Sobic006G234300 Sobic002G154300 Sobic002G154300 Sobic005G007900--Sobic002G154300 Sobic003G383700 Sobic003G383700 Sobic005G007900--Sobic003G383700 Sobic003G283400 Sobic003G283400 Sobic005G007900--Sobic003G283400 Sobic003G365800 Sobic003G365800 Sobic005G007900--Sobic003G365800 Sobic010G156100 Sobic010G156100 Sobic005G007900--Sobic010G156100 Sobic003G142100--Sobic010G156100 Sobic003G142100--Sobic003G283400 Sobic003G142100--Sobic003G308100 Sobic003G142100--Sobic003G365800 Sobic001G271600 Sobic001G271600 Sobic003G142100--Sobic001G271600 Sobic007G094900 Sobic007G094900 Sobic003G142100--Sobic007G094900 Sobic005G020100 Sobic005G020100 Sobic003G142100--Sobic005G020100 Sobic006G235600 Sobic006G235600 Sobic003G142100--Sobic006G235600 Sobic010G204700 Sobic010G204700 Sobic003G142100--Sobic010G204700 Sobic003G373900 Sobic003G373900 Sobic004G343700--Sobic003G373900 Sobic004G246500 Sobic004G246500 Sobic004G343700--Sobic004G246500 Sobic003G019900 Sobic003G019900 Sobic004G343700--Sobic003G019900 Sobic004G343700--Sobic001G271600 Sobic010G185300 Sobic010G185300 Sobic004G343700--Sobic010G185300 Sobic010G269700 Sobic010G269700 Sobic004G343700--Sobic010G269700 Sobic004G234500 Sobic004G234500 Sobic004G343700--Sobic004G234500 Sobic006G274200 Sobic006G274200 Sobic004G343700--Sobic006G274200 Sobic007G147200 Sobic007G147200 Sobic004G343700--Sobic007G147200 Sobic003G308100--Sobic010G156100 Sobic003G308100--Sobic003G365800 Sobic003G308100--Sobic003G142100 Sobic003G308100--Sobic003G283400 Sobic006G111100 Sobic006G111100 Sobic003G308100--Sobic006G111100 Sobic004G101200 Sobic004G101200 Sobic003G308100--Sobic004G101200 Sobic003G308100--Sobic003G383700 Sobic003G308100--Sobic001G271600 Sobic001G495500 Sobic001G495500 Sobic003G308100--Sobic001G495500 Sobic006G015100 Sobic006G015100 Sobic006G234300--Sobic006G015100 Sobic003G092300 Sobic003G092300 Sobic006G234300--Sobic003G092300 Sobic001G106500 Sobic001G106500 Sobic006G234300--Sobic001G106500 Sobic001G459400 Sobic001G459400 Sobic006G234300--Sobic001G459400 Sobic010G183800 Sobic010G183800 Sobic006G234300--Sobic010G183800 Sobic003G129200 Sobic003G129200 Sobic006G234300--Sobic003G129200 Sobic001G459300 Sobic001G459300 Sobic006G234300--Sobic001G459300 Sobic003G300000 Sobic003G300000 Sobic006G234300--Sobic003G300000 Sobic002G239101 Sobic002G239101 Sobic006G234300--Sobic002G239101 Sobic010G191100 Sobic010G191100 Sobic002G154300--Sobic010G191100 Sobic010G271000 Sobic010G271000 Sobic002G154300--Sobic010G271000 Sobic008G137500 Sobic008G137500 Sobic002G154300--Sobic008G137500 Sobic002G154300--Sobic004G343700 Sobic006G069500 Sobic006G069500 Sobic002G154300--Sobic006G069500 Sobic009G233500 Sobic009G233500 Sobic002G154300--Sobic009G233500 Sobic003G273800 Sobic003G273800 Sobic002G154300--Sobic003G273800 Sobic001G511200 Sobic001G511200 Sobic002G154300--Sobic001G511200 Sobic002G408500 Sobic002G408500 Sobic002G154300--Sobic002G408500 Sobic003G383700--Sobic001G271600 Sobic003G295100 Sobic003G295100 Sobic003G383700--Sobic003G295100 Sobic003G383700--Sobic003G308100 Sobic003G383700--Sobic003G365800 Sobic004G229700 Sobic004G229700 Sobic003G383700--Sobic004G229700 Sobic003G374100 Sobic003G374100 Sobic003G383700--Sobic003G374100 Sobic003G383700--Sobic004G101200 Sobic003G090600 Sobic003G090600 Sobic003G383700--Sobic003G090600 Sobic007G128100 Sobic007G128100 Sobic003G383700--Sobic007G128100 Sobic003G283400--Sobic003G365800 Sobic005G104100 Sobic005G104100 Sobic003G283400--Sobic005G104100 Sobic003G283400--Sobic003G142100 Sobic003G283400--Sobic010G156100 Sobic003G283400--Sobic003G308100 Sobic003G283400--Sobic001G271600 Sobic009G129700 Sobic009G129700 Sobic003G283400--Sobic009G129700 Sobic004G344100 Sobic004G344100 Sobic003G283400--Sobic004G344100 Sobic002G341700 Sobic002G341700 Sobic003G283400--Sobic002G341700 Sobic003G365800--Sobic003G308100 Sobic003G365800--Sobic001G271600 Sobic003G365800--Sobic003G283400 Sobic003G365800--Sobic003G142100 Sobic003G365800--Sobic010G156100 Sobic009G169800 Sobic009G169800 Sobic003G365800--Sobic009G169800 Sobic003G365800--Sobic003G295100 Sobic003G365800--Sobic005G020100 Sobic009G151100 Sobic009G151100 Sobic003G365800--Sobic009G151100 Sobic010G156100--Sobic003G308100 Sobic010G156100--Sobic006G111100 Sobic010G156100--Sobic001G495500 Sobic010G156100--Sobic003G142100 Sobic010G156100--Sobic003G283400 Sobic010G156100--Sobic003G365800 Sobic004G072900 Sobic004G072900 Sobic010G156100--Sobic004G072900 Sobic006G123200 Sobic006G123200 Sobic010G156100--Sobic006G123200 Sobic010G156100--Sobic009G151100
Octagon: transcription factors


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