Gene annotation
Transcriptome id Sobic.006G014400.1
Synonym Sb06g001410
Functional annotation pectate lyase precursor, putative, expressed
UniProt A0A1B6PJF1
Pfam PF00544
Panther DB PTHR31683 PTHR31683:SF20
NCBI CDD -
KEGG Orthology K01728; pectate lyase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G13710 : Pectin lyase-like superfamily protein
RAP-DB (Rice) LOC_Os04g05050.1 : pectate lyase precursor, putative, expressed
MaizeGDB (Corn) Zm00025a042286 , Zm00025a012281 , Zm00025a055690
Brachypodium KQJ81497 , KQJ81498 , PNT60530 , PNT60529
Barley HORVU2Hr1G002880.2 , HORVU2Hr1G002880.1 , HORVU2Hr1G002930.2 , HORVU2Hr1G002930.3 , HORVU2Hr1G002930.1 , HORVU2Hr1G002930.4
Wheat TraesCS2A02G016500 , TraesCS2A02G016500 , TraesCS2A02G016500 , TraesCS2B02G024500 , TraesCS2B02G024500 , TraesCS2D02G018000 , TraesCS2D02G018000 , TraesCS2D02G018000
Populus PNT58119 , PNT58120 , PNT51349


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cDNA sequences
Sobic.006G014400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G247000 expressed protein -
2 Sobic.007G087800 expressed protein K06085: SSX2IP, synovial sarcoma, X breakpoint 2 interacting protein
3 Sobic.002G430700 glycosyltransferase family 43 protein, putative, expressed -
4 Sobic.010G231600 cytochrome P450, putative, expressed -
5 Sobic.007G116800 BURP domain containing protein, expressed -
6 Sobic.006G163300 aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)
7 Sobic.010G077000 "Upregulated in leave and stem in response to drouht stress, not expredded in roots"(PubMedID : 31615416)@receptor-like protein kinase 5 precursor, putative, expressed -
8 Sobic.010G092400 glycosyl transferase 8 domain containing protein, putative, expressed -
9 Sobic.006G270500 GDSL-like lipase/acylhydrolase, putative, expressed -
10 Sobic.009G099150 - -
11 Sobic.001G379900 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
12 Sobic.001G455900 "qGL3-2/qLGY3(Ortholog in rice:Yu et al., 2018/Liu et al., 2018)"(PubMedID : 31659846)@determinacy of the spikelet meristem and determining the identity of lemmas and paleas(PubMedID : 15208396)@OsMADS1 - MADS-box family gene with MIKCc type-box, expressed -
13 Sobic.009G173200 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
14 Sobic.010G014500 aspartic protease, putative, expressed -
15 Sobic.003G010700 plant-specific domain TIGR01568 family protein, expressed -
16 Sobic.001G439800 Subtilisin-like serine protease 2("PubMedID : 26759170,PubMedID : 24597475")@OsSub28 - Putative Subtilisin homologue, expressed -
17 Sobic.001G207600 white-brown complex homolog protein 11, putative, expressed -
18 Sobic.001G103800 lecithin cholesterol acyltransferase, putative, expressed K06129: lysophospholipase III
19 Sobic.003G045700 pleiotropic drug resistance protein, putative, expressed -
20 Sobic.007G170100 male sterility protein 2, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase


Gene co-expression network
sample Sobic006G014400 Sobic006G014400 Sobic010G247000 Sobic010G247000 Sobic006G014400--Sobic010G247000 Sobic007G087800 Sobic007G087800 Sobic006G014400--Sobic007G087800 Sobic002G430700 Sobic002G430700 Sobic006G014400--Sobic002G430700 Sobic010G231600 Sobic010G231600 Sobic006G014400--Sobic010G231600 Sobic007G116800 Sobic007G116800 Sobic006G014400--Sobic007G116800 Sobic006G163300 Sobic006G163300 Sobic006G014400--Sobic006G163300 Sobic010G077000 Sobic010G077000 Sobic006G014400--Sobic010G077000 Sobic010G092400 Sobic010G092400 Sobic006G014400--Sobic010G092400 Sobic006G270500 Sobic006G270500 Sobic006G014400--Sobic006G270500 Sobic001G455900 Sobic001G455900 Sobic010G247000--Sobic001G455900 Sobic010G247000--Sobic006G163300 Sobic003G010700 Sobic003G010700 Sobic010G247000--Sobic003G010700 Sobic007G033700 Sobic007G033700 Sobic010G247000--Sobic007G033700 Sobic001G143400 Sobic001G143400 Sobic010G247000--Sobic001G143400 Sobic003G046400 Sobic003G046400 Sobic010G247000--Sobic003G046400 Sobic010G276600 Sobic010G276600 Sobic010G247000--Sobic010G276600 Sobic009G171800 Sobic009G171800 Sobic010G247000--Sobic009G171800 Sobic010G247000--Sobic006G014400 Sobic007G087800--Sobic007G116800 Sobic007G087800--Sobic010G092400 Sobic004G246500 Sobic004G246500 Sobic007G087800--Sobic004G246500 Sobic002G074000 Sobic002G074000 Sobic007G087800--Sobic002G074000 Sobic003G031700 Sobic003G031700 Sobic007G087800--Sobic003G031700 Sobic001G493900 Sobic001G493900 Sobic007G087800--Sobic001G493900 Sobic010G129700 Sobic010G129700 Sobic007G087800--Sobic010G129700 Sobic004G267600 Sobic004G267600 Sobic007G087800--Sobic004G267600 Sobic007G087800--Sobic006G014400 Sobic006G107500 Sobic006G107500 Sobic002G430700--Sobic006G107500 Sobic003G085900 Sobic003G085900 Sobic002G430700--Sobic003G085900 Sobic002G430700--Sobic006G163300 Sobic002G360600 Sobic002G360600 Sobic002G430700--Sobic002G360600 Sobic010G070900 Sobic010G070900 Sobic002G430700--Sobic010G070900 Sobic003G090600 Sobic003G090600 Sobic002G430700--Sobic003G090600 Sobic002G430700--Sobic003G046400 Sobic007G147200 Sobic007G147200 Sobic002G430700--Sobic007G147200 Sobic010G014500 Sobic010G014500 Sobic002G430700--Sobic010G014500 Sobic003G045700 Sobic003G045700 Sobic010G231600--Sobic003G045700 Sobic001G207600 Sobic001G207600 Sobic010G231600--Sobic001G207600 Sobic010G231600--Sobic006G014400 Sobic001G023500 Sobic001G023500 Sobic010G231600--Sobic001G023500 Sobic004G283800 Sobic004G283800 Sobic010G231600--Sobic004G283800 Sobic001G441700 Sobic001G441700 Sobic010G231600--Sobic001G441700 Sobic009G031400 Sobic009G031400 Sobic010G231600--Sobic009G031400 Sobic009G173200 Sobic009G173200 Sobic010G231600--Sobic009G173200 Sobic001G266200 Sobic001G266200 Sobic010G231600--Sobic001G266200 Sobic007G116800--Sobic007G087800 Sobic007G116800--Sobic010G129700 Sobic001G522300 Sobic001G522300 Sobic007G116800--Sobic001G522300 Sobic003G260700 Sobic003G260700 Sobic007G116800--Sobic003G260700 Sobic002G313000 Sobic002G313000 Sobic007G116800--Sobic002G313000 Sobic007G116800--Sobic010G092400 Sobic008G114900 Sobic008G114900 Sobic007G116800--Sobic008G114900 Sobic009G184200 Sobic009G184200 Sobic007G116800--Sobic009G184200 Sobic004G257600 Sobic004G257600 Sobic007G116800--Sobic004G257600 Sobic006G163300--Sobic002G360600 Sobic006G163300--Sobic001G455900 Sobic006G163300--Sobic003G046400 Sobic006G163300--Sobic003G010700 Sobic006G163300--Sobic010G070900 Sobic006G163300--Sobic007G147200 Sobic006G163300--Sobic007G033700 Sobic006G163300--Sobic006G107500 Sobic001G101900 Sobic001G101900 Sobic006G163300--Sobic001G101900 Sobic003G338700 Sobic003G338700 Sobic010G077000--Sobic003G338700 Sobic010G077000--Sobic010G014500 Sobic003G019900 Sobic003G019900 Sobic010G077000--Sobic003G019900 Sobic004G003700 Sobic004G003700 Sobic010G077000--Sobic004G003700 Sobic010G077000--Sobic006G163300 Sobic001G379900 Sobic001G379900 Sobic010G077000--Sobic001G379900 Sobic010G077000--Sobic001G493900 Sobic010G077000--Sobic003G010700 Sobic010G077000--Sobic007G147200 Sobic010G092400--Sobic007G116800 Sobic005G062600 Sobic005G062600 Sobic010G092400--Sobic005G062600 Sobic010G092400--Sobic003G085900 Sobic007G007800 Sobic007G007800 Sobic010G092400--Sobic007G007800 Sobic010G092400--Sobic009G184200 Sobic010G269700 Sobic010G269700 Sobic010G092400--Sobic010G269700 Sobic010G092400--Sobic007G087800 Sobic003G387700 Sobic003G387700 Sobic010G092400--Sobic003G387700 Sobic008G070700 Sobic008G070700 Sobic010G092400--Sobic008G070700 Sobic004G102200 Sobic004G102200 Sobic006G270500--Sobic004G102200 Sobic003G298700 Sobic003G298700 Sobic006G270500--Sobic003G298700 Sobic006G270500--Sobic007G087800 Sobic009G175100 Sobic009G175100 Sobic006G270500--Sobic009G175100 Sobic006G270500--Sobic007G116800 Sobic006G193100 Sobic006G193100 Sobic006G270500--Sobic006G193100 Sobic001G286400 Sobic001G286400 Sobic006G270500--Sobic001G286400 Sobic006G270500--Sobic006G014400 Sobic006G270500--Sobic001G522300
Octagon: transcription factors


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