Gene annotation
Transcriptome id Sobic.003G383700.2,Sobic.003G383700.4,Sobic.003G383700.3,Sobic.003G383700.1
Synonym lateral organ boundaries, Sb03g042310, AS2, SbLBD20
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, expression induced by IAA and BR treatments" (PubMedID : 20499123)
DUF260 domain containing protein, putative, expressed
UniProt A0A1B6Q7G2 , A0A1W0W0X1 , A0A1W0W0W9 , A0A1W0W0Y3
Pfam PF03195
Panther DB PTHR31301 PTHR31301:SF26
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G65620 : Lateral organ boundaries (LOB) domain family protein
RAP-DB (Rice) LOC_Os01g66590.2,LOC_Os01g66590.3 : DUF260 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a039468 , Zm00025a023282 , Zm00025a026486
Brachypodium KQJ88008 , KQK10975 , KQK10976 , KQK06241 , KQK06240 , KQK22581
Barley HORVU0Hr1G017670.1 , HORVU0Hr1G017670.2 , HORVU0Hr1G017670.5 , HORVU3Hr1G016690.3 , HORVU3Hr1G016690.2 , HORVU3Hr1G016690.1 , HORVU3Hr1G090240.3 , HORVU1Hr1G064640.3 , HORVU1Hr1G064640.2 , HORVU1Hr1G064640.1 , HORVU3Hr1G090240.4 , HORVU3Hr1G090250.1 , HORVU3Hr1G090250.3 , HORVU3Hr1G090250.2 , HORVU3Hr1G090250.5 , HORVU3Hr1G090250.4 , HORVU3Hr1G090250.6 , HORVU1Hr1G064640.4 , HORVU0Hr1G017670.3 , HORVU0Hr1G017670.4 , HORVU4Hr1G063160.6 , HORVU4Hr1G063160.4 , HORVU4Hr1G063160.5 , HORVU4Hr1G063160.3 , HORVU4Hr1G063160.1 , HORVU3Hr1G090240.2 , HORVU3Hr1G090240.1 , HORVU3Hr1G090240.6 , HORVU3Hr1G090240.5
Wheat TraesCS6B02G438700 , TraesCS1A02G260000 , TraesCS4D02G225200 , TraesCS4A02G067300 , TraesCS3D02G397200 , TraesCS3A02G402300 , TraesCS3B02G435700 , TraesCS1D02G259900 , TraesCS6D02G382600 , TraesCS1B02G270400 , TraesCS6A02G398400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G271600 transferase family protein, putative, expressed -
2 Sobic.003G295100 GDSL-like lipase/acylhydrolase, putative, expressed -
3 Sobic.003G308100 CSLC1 - cellulose synthase-like family C, expressed -
4 Sobic.003G365800 expressed protein -
5 Sobic.004G229700 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
6 Sobic.003G374100 beta-galactosidase precursor, putative, expressed -
7 Sobic.004G101200 meiosis 5, putative, expressed -
8 Sobic.003G090600 seven in absentia protein family protein, putative, expressed -
9 Sobic.007G128100 expressed protein -
10 Sobic.007G023100 CCT motif family protein, expressed -
11 Sobic.006G111100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@pathogenesis-related Bet v I family protein, putative, expressed -
12 Sobic.003G008800 expressed protein -
13 Sobic.003G283400 GDSL-like lipase/acylhydrolase, putative, expressed -
14 Sobic.010G156100 GDSL-like lipase/acylhydrolase, putative, expressed -
15 Sobic.005G104100 peroxidase precursor, putative, expressed K00430: peroxidase
16 Sobic.004G344100 GDSL-like lipase/acylhydrolase, putative, expressed -
17 Sobic.001G152901 "YABBY transcription factor, "(PubMedID : 22581231) -
18 Sobic.001G077800 MYB family transcription factor, putative, expressed -
19 Sobic.001G043500 RNA recognition motif containing protein, putative, expressed K12876: RBM8A, RNA-binding protein 8A
20 Sobic.004G215500 GDSL-like lipase/acylhydrolase, putative, expressed -


Gene co-expression network
sample Sobic003G383700 Sobic003G383700 Sobic001G271600 Sobic001G271600 Sobic003G383700--Sobic001G271600 Sobic003G295100 Sobic003G295100 Sobic003G383700--Sobic003G295100 Sobic003G308100 Sobic003G308100 Sobic003G383700--Sobic003G308100 Sobic003G365800 Sobic003G365800 Sobic003G383700--Sobic003G365800 Sobic004G229700 Sobic004G229700 Sobic003G383700--Sobic004G229700 Sobic003G374100 Sobic003G374100 Sobic003G383700--Sobic003G374100 Sobic004G101200 Sobic004G101200 Sobic003G383700--Sobic004G101200 Sobic003G090600 Sobic003G090600 Sobic003G383700--Sobic003G090600 Sobic007G128100 Sobic007G128100 Sobic003G383700--Sobic007G128100 Sobic001G271600--Sobic003G365800 Sobic005G020100 Sobic005G020100 Sobic001G271600--Sobic005G020100 Sobic001G271600--Sobic003G374100 Sobic006G107500 Sobic006G107500 Sobic001G271600--Sobic006G107500 Sobic006G228000 Sobic006G228000 Sobic001G271600--Sobic006G228000 Sobic001G271600--Sobic003G295100 Sobic001G271600--Sobic003G090600 Sobic009G169800 Sobic009G169800 Sobic001G271600--Sobic009G169800 Sobic003G085900 Sobic003G085900 Sobic001G271600--Sobic003G085900 Sobic002G239101 Sobic002G239101 Sobic003G295100--Sobic002G239101 Sobic002G159000 Sobic002G159000 Sobic003G295100--Sobic002G159000 Sobic004G168000 Sobic004G168000 Sobic003G295100--Sobic004G168000 Sobic005G070101 Sobic005G070101 Sobic003G295100--Sobic005G070101 Sobic001G235200 Sobic001G235200 Sobic003G295100--Sobic001G235200 Sobic006G213900 Sobic006G213900 Sobic003G295100--Sobic006G213900 Sobic006G134700 Sobic006G134700 Sobic003G295100--Sobic006G134700 Sobic003G295100--Sobic003G374100 Sobic001G463301 Sobic001G463301 Sobic003G295100--Sobic001G463301 Sobic010G156100 Sobic010G156100 Sobic003G308100--Sobic010G156100 Sobic003G308100--Sobic003G365800 Sobic003G142100 Sobic003G142100 Sobic003G308100--Sobic003G142100 Sobic003G283400 Sobic003G283400 Sobic003G308100--Sobic003G283400 Sobic006G111100 Sobic006G111100 Sobic003G308100--Sobic006G111100 Sobic003G308100--Sobic004G101200 Sobic003G308100--Sobic003G383700 Sobic003G308100--Sobic001G271600 Sobic001G495500 Sobic001G495500 Sobic003G308100--Sobic001G495500 Sobic003G365800--Sobic003G308100 Sobic003G365800--Sobic001G271600 Sobic003G365800--Sobic003G283400 Sobic003G365800--Sobic003G142100 Sobic003G365800--Sobic010G156100 Sobic003G365800--Sobic009G169800 Sobic003G365800--Sobic003G295100 Sobic003G365800--Sobic005G020100 Sobic009G151100 Sobic009G151100 Sobic003G365800--Sobic009G151100 Sobic004G326800 Sobic004G326800 Sobic004G229700--Sobic004G326800 Sobic004G229700--Sobic003G365800 Sobic005G062600 Sobic005G062600 Sobic004G229700--Sobic005G062600 Sobic004G229700--Sobic001G271600 Sobic004G229700--Sobic003G383700 Sobic004G229700--Sobic003G295100 Sobic005G104100 Sobic005G104100 Sobic004G229700--Sobic005G104100 Sobic007G023100 Sobic007G023100 Sobic004G229700--Sobic007G023100 Sobic004G229700--Sobic001G463301 Sobic001G137800 Sobic001G137800 Sobic003G374100--Sobic001G137800 Sobic003G374100--Sobic006G228000 Sobic003G129200 Sobic003G129200 Sobic003G374100--Sobic003G129200 Sobic007G043000 Sobic007G043000 Sobic003G374100--Sobic007G043000 Sobic002G121900 Sobic002G121900 Sobic003G374100--Sobic002G121900 Sobic004G234600 Sobic004G234600 Sobic003G374100--Sobic004G234600 Sobic002G053350 Sobic002G053350 Sobic003G374100--Sobic002G053350 Sobic003G374100--Sobic001G235200 Sobic001G235100 Sobic001G235100 Sobic003G374100--Sobic001G235100 Sobic009G219500 Sobic009G219500 Sobic004G101200--Sobic009G219500 Sobic004G101200--Sobic006G111100 Sobic004G101200--Sobic001G137800 Sobic004G101200--Sobic001G235200 Sobic004G101200--Sobic006G213900 Sobic004G101200--Sobic003G374100 Sobic002G076600 Sobic002G076600 Sobic004G101200--Sobic002G076600 Sobic004G101200--Sobic001G235100 Sobic004G101200--Sobic003G129200 Sobic002G430700 Sobic002G430700 Sobic003G090600--Sobic002G430700 Sobic003G090600--Sobic003G085900 Sobic003G090600--Sobic007G023100 Sobic003G090600--Sobic006G107500 Sobic003G090600--Sobic001G271600 Sobic006G163300 Sobic006G163300 Sobic003G090600--Sobic006G163300 Sobic006G271600 Sobic006G271600 Sobic003G090600--Sobic006G271600 Sobic002G360600 Sobic002G360600 Sobic003G090600--Sobic002G360600 Sobic003G046400 Sobic003G046400 Sobic003G090600--Sobic003G046400 Sobic007G128100--Sobic007G023100 Sobic007G128100--Sobic005G062600 Sobic007G161600 Sobic007G161600 Sobic007G128100--Sobic007G161600 Sobic008G038200 Sobic008G038200 Sobic007G128100--Sobic008G038200 Sobic001G298800 Sobic001G298800 Sobic007G128100--Sobic001G298800 Sobic003G027800 Sobic003G027800 Sobic007G128100--Sobic003G027800 Sobic003G019900 Sobic003G019900 Sobic007G128100--Sobic003G019900 Sobic008G151600 Sobic008G151600 Sobic007G128100--Sobic008G151600 Sobic003G008800 Sobic003G008800 Sobic007G128100--Sobic003G008800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.