Gene annotation
Transcriptome id Sobic.001G043500.2
Synonym Y14, Sb01g004010
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt A0A1Z5S4A2
Pfam PF00076
Panther DB PTHR23139 PTHR23139:SF64
NCBI CDD KOG0130; RNA-binding protein RBM8/Tsunagi (RRM superfamily)
KEGG Orthology K12876; RBM8A, RNA-binding protein 8A
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G51510 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os03g59550.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a008705
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G161600 SET domain containing protein, expressed -
2 Sobic.005G162900 dnaJ domain containing protein, expressed -
3 Sobic.002G078900 agenet domain containing protein, expressed -
4 Sobic.002G205000 ZOS9-06 - C2H2 zinc finger protein, expressed -
5 Sobic.007G121700 YDG/SRA domain containing protein, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
6 Sobic.007G033700 OsFBX309 - F-box domain containing protein, expressed -
7 Sobic.001G463301 - -
8 Sobic.003G091200 seven in absentia protein family domain containing protein, expressed -
9 Sobic.002G178700 ubiquitin fusion protein, putative, expressed -
10 Sobic.003G006000 expressed protein -
11 Sobic.003G117200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
12 Sobic.006G271600 RNA recognition motif containing protein, putative, expressed K13126: polyadenylate-binding protein
13 Sobic.003G091300 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
14 Sobic.001G419500 DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
15 Sobic.003G295100 GDSL-like lipase/acylhydrolase, putative, expressed -
16 Sobic.002G203500 protein binding protein, putative, expressed -
17 Sobic.009G243000 OsFBL2 - F-box domain and LRR containing protein, expressed -
18 Sobic.005G062600 MLO domain containing protein, putative, expressed K08472: mlo protein
19 Sobic.001G137500 ankyrin, putative, expressed -
20 Sobic.007G128100 expressed protein -


Gene co-expression network
sample Sobic001G043500 Sobic001G043500 Sobic007G161600 Sobic007G161600 Sobic001G043500--Sobic007G161600 Sobic005G162900 Sobic005G162900 Sobic001G043500--Sobic005G162900 Sobic002G078900 Sobic002G078900 Sobic001G043500--Sobic002G078900 Sobic002G205000 Sobic002G205000 Sobic001G043500--Sobic002G205000 Sobic007G121700 Sobic007G121700 Sobic001G043500--Sobic007G121700 Sobic007G033700 Sobic007G033700 Sobic001G043500--Sobic007G033700 Sobic001G463301 Sobic001G463301 Sobic001G043500--Sobic001G463301 Sobic003G091200 Sobic003G091200 Sobic001G043500--Sobic003G091200 Sobic002G178700 Sobic002G178700 Sobic001G043500--Sobic002G178700 Sobic008G151600 Sobic008G151600 Sobic007G161600--Sobic008G151600 Sobic005G062600 Sobic005G062600 Sobic007G161600--Sobic005G062600 Sobic007G147200 Sobic007G147200 Sobic007G161600--Sobic007G147200 Sobic007G161600--Sobic001G043500 Sobic003G019900 Sobic003G019900 Sobic007G161600--Sobic003G019900 Sobic010G092400 Sobic010G092400 Sobic007G161600--Sobic010G092400 Sobic006G163300 Sobic006G163300 Sobic007G161600--Sobic006G163300 Sobic003G008800 Sobic003G008800 Sobic007G161600--Sobic003G008800 Sobic003G046400 Sobic003G046400 Sobic007G161600--Sobic003G046400 Sobic001G071600 Sobic001G071600 Sobic005G162900--Sobic001G071600 Sobic005G162900--Sobic003G091200 Sobic006G271600 Sobic006G271600 Sobic005G162900--Sobic006G271600 Sobic005G162900--Sobic007G033700 Sobic009G243000 Sobic009G243000 Sobic005G162900--Sobic009G243000 Sobic005G162900--Sobic002G078900 Sobic005G163500 Sobic005G163500 Sobic005G162900--Sobic005G163500 Sobic010G183800 Sobic010G183800 Sobic005G162900--Sobic010G183800 Sobic005G162900--Sobic007G121700 Sobic001G456000 Sobic001G456000 Sobic002G078900--Sobic001G456000 Sobic002G078900--Sobic010G183800 Sobic001G459400 Sobic001G459400 Sobic002G078900--Sobic001G459400 Sobic003G300000 Sobic003G300000 Sobic002G078900--Sobic003G300000 Sobic001G106500 Sobic001G106500 Sobic002G078900--Sobic001G106500 Sobic002G078900--Sobic001G071600 Sobic001G459300 Sobic001G459300 Sobic002G078900--Sobic001G459300 Sobic003G092300 Sobic003G092300 Sobic002G078900--Sobic003G092300 Sobic002G078900--Sobic009G243000 Sobic002G205000--Sobic009G243000 Sobic002G205000--Sobic007G033700 Sobic002G205000--Sobic002G078900 Sobic004G237000 Sobic004G237000 Sobic002G205000--Sobic004G237000 Sobic003G091700 Sobic003G091700 Sobic002G205000--Sobic003G091700 Sobic003G319900 Sobic003G319900 Sobic002G205000--Sobic003G319900 Sobic001G137600 Sobic001G137600 Sobic002G205000--Sobic001G137600 Sobic003G006000 Sobic003G006000 Sobic002G205000--Sobic003G006000 Sobic005G131000 Sobic005G131000 Sobic002G205000--Sobic005G131000 Sobic007G121700--Sobic005G162900 Sobic007G121700--Sobic001G043500 Sobic007G121700--Sobic001G463301 Sobic007G121700--Sobic003G008800 Sobic003G243000 Sobic003G243000 Sobic007G121700--Sobic003G243000 Sobic007G121700--Sobic003G091200 Sobic007G121700--Sobic010G183800 Sobic007G121700--Sobic002G078900 Sobic007G121700--Sobic001G456000 Sobic007G033700--Sobic003G046400 Sobic007G033700--Sobic009G243000 Sobic007G033700--Sobic001G137600 Sobic001G455900 Sobic001G455900 Sobic007G033700--Sobic001G455900 Sobic007G033700--Sobic006G163300 Sobic010G070900 Sobic010G070900 Sobic007G033700--Sobic010G070900 Sobic007G033700--Sobic006G271600 Sobic007G033700--Sobic001G071600 Sobic007G033700--Sobic004G237000 Sobic001G463301--Sobic003G300000 Sobic001G463301--Sobic010G183800 Sobic001G463301--Sobic003G092300 Sobic009G063700 Sobic009G063700 Sobic001G463301--Sobic009G063700 Sobic001G463301--Sobic001G459400 Sobic001G158100 Sobic001G158100 Sobic001G463301--Sobic001G158100 Sobic009G075500 Sobic009G075500 Sobic001G463301--Sobic009G075500 Sobic001G463301--Sobic002G078900 Sobic004G234600 Sobic004G234600 Sobic001G463301--Sobic004G234600 Sobic002G196500 Sobic002G196500 Sobic003G091200--Sobic002G196500 Sobic003G091200--Sobic005G162900 Sobic004G149400 Sobic004G149400 Sobic003G091200--Sobic004G149400 Sobic001G137400 Sobic001G137400 Sobic003G091200--Sobic001G137400 Sobic001G171200 Sobic001G171200 Sobic003G091200--Sobic001G171200 Sobic003G091200--Sobic009G243000 Sobic003G022900 Sobic003G022900 Sobic003G091200--Sobic003G022900 Sobic004G220200 Sobic004G220200 Sobic003G091200--Sobic004G220200 Sobic001G457600 Sobic001G457600 Sobic003G091200--Sobic001G457600 Sobic001G419500 Sobic001G419500 Sobic002G178700--Sobic001G419500 Sobic002G178700--Sobic003G006000 Sobic001G137500 Sobic001G137500 Sobic002G178700--Sobic001G137500 Sobic003G088600 Sobic003G088600 Sobic002G178700--Sobic003G088600 Sobic002G178700--Sobic009G063700 Sobic002G178700--Sobic002G078900 Sobic002G178700--Sobic001G459400 Sobic008G137700 Sobic008G137700 Sobic002G178700--Sobic008G137700 Sobic002G178700--Sobic003G300000
Octagon: transcription factors


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