Gene annotation
Transcriptome id Sobic.004G269100.1,Sobic.004G269100.4,Sobic.004G269100.2,Sobic.004G269100.3
Synonym ROPGEF14, ATROPGEF14, Sb04g030700
Functional annotation ATROPGEF7/ROPGEF7, putative, expressed
UniProt C5Y0D0
Pfam PF03759
Panther DB PTHR33101 PTHR33101:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005089; Rho guanyl-nucleotide exchange factor activity


Orthologs (automatic annotation)
TAIR AT1G31650 : RHO guanyl-nucleotide exchange factor 14
RAP-DB (Rice) LOC_Os02g47420.1,LOC_Os02g47420.2 : ATROPGEF7/ROPGEF7, putative, expressed
MaizeGDB (Corn) Zm00025a032449 , Zm00025a021697
Brachypodium KQK00913 , PNT69280 , KQK00915 , KQK00914 , KQK00916
Barley HORVU6Hr1G041610.21 , HORVU6Hr1G068660.4 , HORVU6Hr1G068660.2 , HORVU6Hr1G068660.3 , HORVU6Hr1G068660.1 , HORVU6Hr1G041610.8 , HORVU6Hr1G041610.9 , HORVU6Hr1G041610.2 , HORVU6Hr1G041610.3 , HORVU6Hr1G041610.1 , HORVU6Hr1G041610.6 , HORVU6Hr1G041610.7 , HORVU6Hr1G041610.4 , HORVU6Hr1G041610.5 , HORVU6Hr1G041610.18 , HORVU6Hr1G041610.19 , HORVU6Hr1G041610.10 , HORVU6Hr1G041610.11 , HORVU6Hr1G041610.12 , HORVU6Hr1G041610.13 , HORVU6Hr1G041610.14 , HORVU6Hr1G041610.15 , HORVU6Hr1G041610.16 , HORVU6Hr1G041610.17 , HORVU6Hr1G041610.20
Wheat TraesCS6B02G298000 , TraesCS6B02G298000 , TraesCS6D02G244200 , TraesCS6A02G270900
Populus -


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cDNA sequences
Sobic.004G269100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G052300 plant protein of unknown function DUF869 domain containing protein, expressed -
2 Sobic.002G259200 POEI18 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
3 Sobic.003G251700 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin response factor, putative, expressed K14486: K14486, auxin response factor
4 Sobic.005G092700 expressed protein -
5 Sobic.005G153000 agenet domain containing protein, expressed -
6 Sobic.001G461800 zinc finger family protein, putative, expressed -
7 Sobic.003G250000 peroxidase family protein, expressed K00430: peroxidase
8 Sobic.003G222800 lipase, putative, expressed -
9 Sobic.003G055800 expressed protein -
10 Sobic.005G163400 dnaJ domain containing protein, expressed -
11 Sobic.006G135800 peroxidase precursor, putative, expressed K00430: peroxidase
12 Sobic.003G041900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF581 domain containing protein, expressed -
13 Sobic.006G172000 pectinesterase, putative, expressed -
14 Sobic.001G493100 LTPL82 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
15 Sobic.003G104100 expressed protein -
16 Sobic.005G102800 OsSCP48 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
17 Sobic.006G016700 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
18 Sobic.009G127800 BZIP protein, putative, expressed -
19 Sobic.006G226000 expressed protein -
20 Sobic.004G215100 expressed protein -


Gene co-expression network
sample Sobic004G269100 Sobic004G269100 Sobic008G052300 Sobic008G052300 Sobic004G269100--Sobic008G052300 Sobic002G259200 Sobic002G259200 Sobic004G269100--Sobic002G259200 Sobic003G251700 Sobic003G251700 Sobic004G269100--Sobic003G251700 Sobic005G092700 Sobic005G092700 Sobic004G269100--Sobic005G092700 Sobic005G153000 Sobic005G153000 Sobic004G269100--Sobic005G153000 Sobic001G461800 Sobic001G461800 Sobic004G269100--Sobic001G461800 Sobic003G250000 Sobic003G250000 Sobic004G269100--Sobic003G250000 Sobic003G222800 Sobic003G222800 Sobic004G269100--Sobic003G222800 Sobic003G055800 Sobic003G055800 Sobic004G269100--Sobic003G055800 Sobic008G052300--Sobic004G269100 Sobic003G104100 Sobic003G104100 Sobic008G052300--Sobic003G104100 Sobic009G127800 Sobic009G127800 Sobic008G052300--Sobic009G127800 Sobic006G221300 Sobic006G221300 Sobic008G052300--Sobic006G221300 Sobic005G163400 Sobic005G163400 Sobic008G052300--Sobic005G163400 Sobic008G052300--Sobic002G259200 Sobic006G016700 Sobic006G016700 Sobic008G052300--Sobic006G016700 Sobic008G052300--Sobic005G153000 Sobic009G225500 Sobic009G225500 Sobic008G052300--Sobic009G225500 Sobic002G259200--Sobic004G269100 Sobic002G259200--Sobic003G222800 Sobic001G493100 Sobic001G493100 Sobic002G259200--Sobic001G493100 Sobic002G259200--Sobic008G052300 Sobic006G172000 Sobic006G172000 Sobic002G259200--Sobic006G172000 Sobic002G286700 Sobic002G286700 Sobic002G259200--Sobic002G286700 Sobic002G259200--Sobic005G163400 Sobic006G041700 Sobic006G041700 Sobic002G259200--Sobic006G041700 Sobic008G190000 Sobic008G190000 Sobic002G259200--Sobic008G190000 Sobic003G251700--Sobic006G172000 Sobic003G251700--Sobic004G269100 Sobic004G215100 Sobic004G215100 Sobic003G251700--Sobic004G215100 Sobic003G251700--Sobic001G493100 Sobic006G135800 Sobic006G135800 Sobic003G251700--Sobic006G135800 Sobic003G251700--Sobic002G259200 Sobic006G226000 Sobic006G226000 Sobic003G251700--Sobic006G226000 Sobic003G251700--Sobic005G092700 Sobic003G251700--Sobic006G041700 Sobic005G092700--Sobic008G190000 Sobic008G042200 Sobic008G042200 Sobic005G092700--Sobic008G042200 Sobic009G200000 Sobic009G200000 Sobic005G092700--Sobic009G200000 Sobic004G115700 Sobic004G115700 Sobic005G092700--Sobic004G115700 Sobic003G366000 Sobic003G366000 Sobic005G092700--Sobic003G366000 Sobic001G381100 Sobic001G381100 Sobic005G092700--Sobic001G381100 Sobic001G160000 Sobic001G160000 Sobic005G092700--Sobic001G160000 Sobic001G390400 Sobic001G390400 Sobic005G092700--Sobic001G390400 Sobic001G075700 Sobic001G075700 Sobic005G092700--Sobic001G075700 Sobic009G077300 Sobic009G077300 Sobic005G153000--Sobic009G077300 Sobic002G168000 Sobic002G168000 Sobic005G153000--Sobic002G168000 Sobic004G282601 Sobic004G282601 Sobic005G153000--Sobic004G282601 Sobic010G037901 Sobic010G037901 Sobic005G153000--Sobic010G037901 Sobic003G290400 Sobic003G290400 Sobic005G153000--Sobic003G290400 Sobic007G187700 Sobic007G187700 Sobic005G153000--Sobic007G187700 Sobic005G153000--Sobic006G221300 Sobic003G129500 Sobic003G129500 Sobic005G153000--Sobic003G129500 Sobic005G196600 Sobic005G196600 Sobic005G153000--Sobic005G196600 Sobic001G461800--Sobic003G250000 Sobic004G164700 Sobic004G164700 Sobic001G461800--Sobic004G164700 Sobic003G291000 Sobic003G291000 Sobic001G461800--Sobic003G291000 Sobic001G461800--Sobic002G286700 Sobic001G461800--Sobic008G190000 Sobic003G078300 Sobic003G078300 Sobic001G461800--Sobic003G078300 Sobic004G253500 Sobic004G253500 Sobic001G461800--Sobic004G253500 Sobic001G461800--Sobic001G381100 Sobic006G241800 Sobic006G241800 Sobic001G461800--Sobic006G241800 Sobic003G250000--Sobic001G461800 Sobic003G250000--Sobic004G253500 Sobic003G250000--Sobic004G269100 Sobic003G250000--Sobic003G078300 Sobic009G002900 Sobic009G002900 Sobic003G250000--Sobic009G002900 Sobic003G250000--Sobic003G291000 Sobic003G250000--Sobic002G286700 Sobic003G259500 Sobic003G259500 Sobic003G250000--Sobic003G259500 Sobic003G250000--Sobic002G259200 Sobic003G222800--Sobic002G259200 Sobic003G222800--Sobic004G269100 Sobic003G222800--Sobic003G055800 Sobic003G041900 Sobic003G041900 Sobic003G222800--Sobic003G041900 Sobic003G222800--Sobic006G041700 Sobic003G222800--Sobic001G493100 Sobic003G222800--Sobic006G172000 Sobic003G222800--Sobic003G251700 Sobic003G222800--Sobic005G092700 Sobic003G055800--Sobic004G269100 Sobic003G055800--Sobic003G222800 Sobic003G055800--Sobic002G259200 Sobic003G055800--Sobic003G041900 Sobic003G055800--Sobic003G250000 Sobic003G055800--Sobic001G461800 Sobic003G055800--Sobic003G291000 Sobic003G055800--Sobic005G092700 Sobic010G097000 Sobic010G097000 Sobic003G055800--Sobic010G097000
Octagon: transcription factors


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