Gene annotation
Transcriptome id Sobic.003G251700.2,Sobic.003G251700.1
Synonym SbARF4, Sb03g030740, ARF3, SbARF4;auxin response factor, auxin response factor, ETT
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root" (PubMedID : 20499123)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
auxin response factor, putative, expressed
UniProt C5XG18 , A0A1W0VYW8
Pfam PF02362 PF06507
Panther DB PTHR31384 PTHR31384:SF31
NCBI CDD -
KEGG Orthology K14486; K14486, auxin response factor
Gene Ontology GO:0003677; DNA binding GO:0009725response to hormone GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT2G33860 : Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related
RAP-DB (Rice) LOC_Os01g48060.2 : auxin response factor, putative, expressed
MaizeGDB (Corn) Zm00025a028102 , Zm00025a044563
Brachypodium PNT70708 , PNT70707 , PNT70709 , KQK04890 , KQK04891 , KQK04887 , KQK04889 , KQK04888 , KQK09126
Barley HORVU1Hr1G087460.8 , HORVU1Hr1G087460.9 , HORVU1Hr1G087460.4 , HORVU1Hr1G087460.5 , HORVU1Hr1G087460.6 , HORVU1Hr1G087460.7 , HORVU1Hr1G087460.1 , HORVU1Hr1G087460.2 , HORVU1Hr1G087460.3 , HORVU1Hr1G087460.18 , HORVU1Hr1G087460.19 , HORVU1Hr1G087460.16 , HORVU1Hr1G087460.17 , HORVU1Hr1G087460.14 , HORVU1Hr1G087460.15 , HORVU1Hr1G087460.12 , HORVU1Hr1G087460.13 , HORVU1Hr1G087460.10 , HORVU1Hr1G087460.11 , HORVU1Hr1G087460.27 , HORVU1Hr1G087460.26 , HORVU1Hr1G087460.25 , HORVU1Hr1G087460.24 , HORVU1Hr1G087460.23 , HORVU1Hr1G087460.22 , HORVU1Hr1G087460.21 , HORVU1Hr1G087460.20 , HORVU1Hr1G087460.29 , HORVU1Hr1G087460.28 , HORVU2Hr1G121110.29 , HORVU2Hr1G121110.28 , HORVU2Hr1G121110.27 , HORVU2Hr1G121110.26 , HORVU1Hr1G087460.30 , HORVU1Hr1G087460.31 , HORVU1Hr1G087460.32 , HORVU1Hr1G087460.33 , HORVU2Hr1G121110.34 , HORVU2Hr1G121110.35 , HORVU2Hr1G121110.36 , HORVU2Hr1G121110.30 , HORVU2Hr1G121110.31 , HORVU2Hr1G121110.32 , HORVU2Hr1G121110.33
Wheat TraesCS3A02G246000 , TraesCS3A02G246000 , TraesCS1B02G424700 , TraesCS3D02G245400 , TraesCS2A02G547800 , TraesCS2B02G578500 , TraesCS1A02G396400 , TraesCS3D02G245400 , TraesCS3B02G273400 , TraesCS3B02G273400 , TraesCS3B02G273400 , TraesCS2D02G548900 , TraesCS1D02G404400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G172000 pectinesterase, putative, expressed -
2 Sobic.004G269100 ATROPGEF7/ROPGEF7, putative, expressed -
3 Sobic.004G215100 expressed protein -
4 Sobic.001G493100 LTPL82 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
5 Sobic.006G135800 peroxidase precursor, putative, expressed K00430: peroxidase
6 Sobic.002G259200 POEI18 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
7 Sobic.006G226000 expressed protein -
8 Sobic.005G092700 expressed protein -
9 Sobic.006G041700 sex determination protein tasselseed-2, putative, expressed -
10 Sobic.007G097100 aspartic proteinase nepenthesin precursor, putative, expressed -
11 Sobic.006G016700 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
12 Sobic.008G052300 plant protein of unknown function DUF869 domain containing protein, expressed -
13 Sobic.010G257000 two-component response regulator, putative, expressed -
14 Sobic.006G197400 helix-loop-helix DNA-binding protein, putative, expressed -
15 Sobic.004G115700 extra-large G-protein-related, putative, expressed -
16 Sobic.005G153000 agenet domain containing protein, expressed -
17 Sobic.001G148450 - -
18 Sobic.004G313900 homeobox and START domains containing protein, putative, expressed K09338: homeobox-leucine zipper protein
19 Sobic.004G234500 eukaryotic aspartyl protease domain containing protein, expressed -
20 Sobic.008G190000 leucine-rich repeat family protein, putative, expressed -


Gene co-expression network
sample Sobic003G251700 Sobic003G251700 Sobic006G172000 Sobic006G172000 Sobic003G251700--Sobic006G172000 Sobic004G269100 Sobic004G269100 Sobic003G251700--Sobic004G269100 Sobic004G215100 Sobic004G215100 Sobic003G251700--Sobic004G215100 Sobic001G493100 Sobic001G493100 Sobic003G251700--Sobic001G493100 Sobic006G135800 Sobic006G135800 Sobic003G251700--Sobic006G135800 Sobic002G259200 Sobic002G259200 Sobic003G251700--Sobic002G259200 Sobic006G226000 Sobic006G226000 Sobic003G251700--Sobic006G226000 Sobic005G092700 Sobic005G092700 Sobic003G251700--Sobic005G092700 Sobic006G041700 Sobic006G041700 Sobic003G251700--Sobic006G041700 Sobic006G172000--Sobic001G493100 Sobic006G172000--Sobic003G251700 Sobic006G172000--Sobic006G135800 Sobic006G172000--Sobic006G041700 Sobic007G097100 Sobic007G097100 Sobic006G172000--Sobic007G097100 Sobic004G330200 Sobic004G330200 Sobic006G172000--Sobic004G330200 Sobic002G175200 Sobic002G175200 Sobic006G172000--Sobic002G175200 Sobic001G246600 Sobic001G246600 Sobic006G172000--Sobic001G246600 Sobic006G172000--Sobic006G226000 Sobic008G052300 Sobic008G052300 Sobic004G269100--Sobic008G052300 Sobic004G269100--Sobic002G259200 Sobic004G269100--Sobic003G251700 Sobic004G269100--Sobic005G092700 Sobic005G153000 Sobic005G153000 Sobic004G269100--Sobic005G153000 Sobic001G461800 Sobic001G461800 Sobic004G269100--Sobic001G461800 Sobic003G250000 Sobic003G250000 Sobic004G269100--Sobic003G250000 Sobic003G222800 Sobic003G222800 Sobic004G269100--Sobic003G222800 Sobic003G055800 Sobic003G055800 Sobic004G269100--Sobic003G055800 Sobic004G215100--Sobic003G251700 Sobic004G215100--Sobic006G172000 Sobic004G115700 Sobic004G115700 Sobic004G215100--Sobic004G115700 Sobic004G215100--Sobic004G269100 Sobic004G215100--Sobic001G493100 Sobic001G448000 Sobic001G448000 Sobic004G215100--Sobic001G448000 Sobic004G215100--Sobic007G097100 Sobic002G378600 Sobic002G378600 Sobic004G215100--Sobic002G378600 Sobic010G106100 Sobic010G106100 Sobic004G215100--Sobic010G106100 Sobic001G493100--Sobic006G172000 Sobic001G493100--Sobic006G135800 Sobic001G493100--Sobic006G226000 Sobic001G493100--Sobic006G041700 Sobic006G197400 Sobic006G197400 Sobic001G493100--Sobic006G197400 Sobic007G160400 Sobic007G160400 Sobic001G493100--Sobic007G160400 Sobic010G037901 Sobic010G037901 Sobic001G493100--Sobic010G037901 Sobic003G086800 Sobic003G086800 Sobic001G493100--Sobic003G086800 Sobic009G031800 Sobic009G031800 Sobic001G493100--Sobic009G031800 Sobic006G135800--Sobic001G493100 Sobic006G135800--Sobic010G037901 Sobic006G135800--Sobic006G226000 Sobic006G135800--Sobic006G172000 Sobic009G002200 Sobic009G002200 Sobic006G135800--Sobic009G002200 Sobic006G135800--Sobic005G153000 Sobic007G192200 Sobic007G192200 Sobic006G135800--Sobic007G192200 Sobic006G135800--Sobic009G031800 Sobic006G135800--Sobic007G160400 Sobic002G259200--Sobic004G269100 Sobic002G259200--Sobic003G222800 Sobic002G259200--Sobic001G493100 Sobic002G259200--Sobic008G052300 Sobic002G259200--Sobic006G172000 Sobic002G286700 Sobic002G286700 Sobic002G259200--Sobic002G286700 Sobic005G163400 Sobic005G163400 Sobic002G259200--Sobic005G163400 Sobic002G259200--Sobic006G041700 Sobic008G190000 Sobic008G190000 Sobic002G259200--Sobic008G190000 Sobic006G226000--Sobic009G031800 Sobic006G226000--Sobic007G160400 Sobic006G226000--Sobic010G037901 Sobic002G055800 Sobic002G055800 Sobic006G226000--Sobic002G055800 Sobic002G256900 Sobic002G256900 Sobic006G226000--Sobic002G256900 Sobic004G123200 Sobic004G123200 Sobic006G226000--Sobic004G123200 Sobic006G226000--Sobic003G086800 Sobic002G240000 Sobic002G240000 Sobic006G226000--Sobic002G240000 Sobic001G136400 Sobic001G136400 Sobic006G226000--Sobic001G136400 Sobic005G092700--Sobic008G190000 Sobic008G042200 Sobic008G042200 Sobic005G092700--Sobic008G042200 Sobic009G200000 Sobic009G200000 Sobic005G092700--Sobic009G200000 Sobic005G092700--Sobic004G115700 Sobic003G366000 Sobic003G366000 Sobic005G092700--Sobic003G366000 Sobic001G381100 Sobic001G381100 Sobic005G092700--Sobic001G381100 Sobic001G160000 Sobic001G160000 Sobic005G092700--Sobic001G160000 Sobic001G390400 Sobic001G390400 Sobic005G092700--Sobic001G390400 Sobic001G075700 Sobic001G075700 Sobic005G092700--Sobic001G075700 Sobic006G041700--Sobic001G493100 Sobic006G041700--Sobic006G172000 Sobic006G041700--Sobic006G197400 Sobic006G041700--Sobic003G086800 Sobic006G041700--Sobic001G246600 Sobic006G041700--Sobic002G175200 Sobic006G041700--Sobic004G330200 Sobic003G350400 Sobic003G350400 Sobic006G041700--Sobic003G350400 Sobic006G041700--Sobic002G259200
Octagon: transcription factors


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