Gene annotation
Transcriptome id Sobic.006G041700.1
Synonym ISI4, ATSDR1, SIS4, Sb06g009610, SRE1, SDR1, ABA2, GIN1, ATABA2
Functional annotation sex determination protein tasselseed-2, putative, expressed
UniProt C5YDW3
Pfam PF13561
Panther DB PTHR24322 PTHR24322:SF401
NCBI CDD KOG0725; Reductases with broad range of substrate specificities
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G52340 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os04g33240.1 : sex determination protein tasselseed-2, putative, expressed
MaizeGDB (Corn) Zm00025a011876
Brachypodium KQJ82434 , KQJ82745
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G493100 LTPL82 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
2 Sobic.006G172000 pectinesterase, putative, expressed -
3 Sobic.006G197400 helix-loop-helix DNA-binding protein, putative, expressed -
4 Sobic.003G086800 ZOS1-02 - C2H2 zinc finger protein, expressed -
5 Sobic.001G246600 MBTB37 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
6 Sobic.002G175200 A3-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with A3 subfamily conserved sequence, expressed K10523: speckle-type POZ protein
7 Sobic.004G330200 "TGW6(Ortholog in rice:Ishimaru et al., 2013)"(PubMedID : 31659893)@SMP-30/Gluconolaconase/LRE-like region containing protein, expressed -
8 Sobic.003G350400 thaumatin, putative, expressed -
9 Sobic.002G259200 POEI18 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
10 Sobic.006G135800 peroxidase precursor, putative, expressed K00430: peroxidase
11 Sobic.006G226000 expressed protein -
12 Sobic.007G097100 aspartic proteinase nepenthesin precursor, putative, expressed -
13 Sobic.002G256900 acyl-ACP thioesterase, putative, expressed K10782: fatty acyl-ACP thioesterase A
14 Sobic.006G016700 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
15 Sobic.009G188500 expressed protein -
16 Sobic.001G068132 - -
17 Sobic.010G037901 - -
18 Sobic.007G160400 ZF-HD homeobox protein, putative, expressed -
19 Sobic.003G251700 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin response factor, putative, expressed K14486: K14486, auxin response factor
20 Sobic.005G092700 expressed protein -


Gene co-expression network
sample Sobic006G041700 Sobic006G041700 Sobic001G493100 Sobic001G493100 Sobic006G041700--Sobic001G493100 Sobic006G172000 Sobic006G172000 Sobic006G041700--Sobic006G172000 Sobic006G197400 Sobic006G197400 Sobic006G041700--Sobic006G197400 Sobic003G086800 Sobic003G086800 Sobic006G041700--Sobic003G086800 Sobic001G246600 Sobic001G246600 Sobic006G041700--Sobic001G246600 Sobic002G175200 Sobic002G175200 Sobic006G041700--Sobic002G175200 Sobic004G330200 Sobic004G330200 Sobic006G041700--Sobic004G330200 Sobic003G350400 Sobic003G350400 Sobic006G041700--Sobic003G350400 Sobic002G259200 Sobic002G259200 Sobic006G041700--Sobic002G259200 Sobic001G493100--Sobic006G172000 Sobic006G135800 Sobic006G135800 Sobic001G493100--Sobic006G135800 Sobic006G226000 Sobic006G226000 Sobic001G493100--Sobic006G226000 Sobic001G493100--Sobic006G041700 Sobic001G493100--Sobic006G197400 Sobic007G160400 Sobic007G160400 Sobic001G493100--Sobic007G160400 Sobic010G037901 Sobic010G037901 Sobic001G493100--Sobic010G037901 Sobic001G493100--Sobic003G086800 Sobic009G031800 Sobic009G031800 Sobic001G493100--Sobic009G031800 Sobic006G172000--Sobic001G493100 Sobic003G251700 Sobic003G251700 Sobic006G172000--Sobic003G251700 Sobic006G172000--Sobic006G135800 Sobic006G172000--Sobic006G041700 Sobic007G097100 Sobic007G097100 Sobic006G172000--Sobic007G097100 Sobic006G172000--Sobic004G330200 Sobic006G172000--Sobic002G175200 Sobic006G172000--Sobic001G246600 Sobic006G172000--Sobic006G226000 Sobic006G197400--Sobic001G493100 Sobic001G199200 Sobic001G199200 Sobic006G197400--Sobic001G199200 Sobic006G197400--Sobic006G041700 Sobic006G255300 Sobic006G255300 Sobic006G197400--Sobic006G255300 Sobic006G197400--Sobic003G086800 Sobic006G016700 Sobic006G016700 Sobic006G197400--Sobic006G016700 Sobic006G197400--Sobic006G172000 Sobic006G197400--Sobic001G246600 Sobic006G197400--Sobic002G175200 Sobic003G086800--Sobic010G037901 Sobic003G086800--Sobic007G160400 Sobic003G086800--Sobic006G226000 Sobic002G256900 Sobic002G256900 Sobic003G086800--Sobic002G256900 Sobic004G142400 Sobic004G142400 Sobic003G086800--Sobic004G142400 Sobic009G014800 Sobic009G014800 Sobic003G086800--Sobic009G014800 Sobic004G123200 Sobic004G123200 Sobic003G086800--Sobic004G123200 Sobic006G083900 Sobic006G083900 Sobic003G086800--Sobic006G083900 Sobic001G203350 Sobic001G203350 Sobic003G086800--Sobic001G203350 Sobic001G246600--Sobic002G175200 Sobic001G246600--Sobic004G330200 Sobic001G246600--Sobic006G172000 Sobic001G068132 Sobic001G068132 Sobic001G246600--Sobic001G068132 Sobic001G246600--Sobic001G493100 Sobic001G276800 Sobic001G276800 Sobic001G246600--Sobic001G276800 Sobic001G246600--Sobic003G086800 Sobic003G384600 Sobic003G384600 Sobic001G246600--Sobic003G384600 Sobic001G246600--Sobic007G160400 Sobic002G175200--Sobic002G175200 Sobic002G175200--Sobic001G246600 Sobic002G175200--Sobic006G172000 Sobic002G175200--Sobic001G068132 Sobic002G175200--Sobic001G493100 Sobic002G175200--Sobic001G276800 Sobic002G175200--Sobic003G086800 Sobic002G175200--Sobic003G384600 Sobic002G175200--Sobic007G160400 Sobic004G330200--Sobic002G175200 Sobic004G330200--Sobic001G246600 Sobic004G330200--Sobic006G172000 Sobic004G330200--Sobic001G068132 Sobic004G330200--Sobic001G493100 Sobic004G330200--Sobic001G276800 Sobic004G330200--Sobic003G086800 Sobic004G330200--Sobic003G384600 Sobic004G330200--Sobic007G160400 Sobic003G350400--Sobic002G256900 Sobic003G350400--Sobic006G016700 Sobic003G350400--Sobic007G097100 Sobic004G311600 Sobic004G311600 Sobic003G350400--Sobic004G311600 Sobic003G350400--Sobic006G041700 Sobic003G350400--Sobic004G330200 Sobic003G350400--Sobic002G175200 Sobic003G350400--Sobic001G246600 Sobic003G350400--Sobic004G142400 Sobic004G269100 Sobic004G269100 Sobic002G259200--Sobic004G269100 Sobic003G222800 Sobic003G222800 Sobic002G259200--Sobic003G222800 Sobic002G259200--Sobic001G493100 Sobic008G052300 Sobic008G052300 Sobic002G259200--Sobic008G052300 Sobic002G259200--Sobic006G172000 Sobic002G286700 Sobic002G286700 Sobic002G259200--Sobic002G286700 Sobic005G163400 Sobic005G163400 Sobic002G259200--Sobic005G163400 Sobic002G259200--Sobic006G041700 Sobic008G190000 Sobic008G190000 Sobic002G259200--Sobic008G190000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.