Gene annotation
Transcriptome id Sobic.003G041900.2
Synonym Sb03g003720
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
DUF581 domain containing protein, expressed
UniProt C5XMP1
Pfam PF04570
Panther DB PTHR33059 PTHR33059:SF15
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G63210 : Protein of unknown function (DUF581)
RAP-DB (Rice) LOC_Os01g08520.1 : DUF581 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a023162 , Zm00025a035772
Brachypodium -
Barley HORVU3Hr1G021650.1
Wheat TraesCS3D02G119500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G041900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G164700 expressed protein -
2 Sobic.010G023400 phosphate-induced protein 1 conserved region domain containing protein, expressed -
3 Sobic.010G192500 anthranilate phosphoribosyltransferase, putative, expressed -
4 Sobic.006G241800 receptor kinase, putative, expressed -
5 Sobic.010G086000 cyclin, putative, expressed K18810: cyclin D1/2/4, plant
6 Sobic.008G190000 leucine-rich repeat family protein, putative, expressed -
7 Sobic.004G317200 "Upregulated to a greater extent than that of SbER1 in stem in response to drouht stress, not expredded in roots. SbER2 fusion protein localized on the cell membrane and chloroplast. Net photosynthetic rate and WUE, phenylpropanoid biosynthetic genes expression, and lignin content increased in overexpressing maize."(PubMedID : 31615416)@receptor-like protein kinase 5 precursor, putative, expressed -
8 Sobic.006G142500 protein kinase, putative, expressed -
9 Sobic.006G211900 Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
10 Sobic.003G366000 DUF623 domain containing protein, expressed -
11 Sobic.001G390400 expressed protein -
12 Sobic.002G259200 POEI18 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
13 Sobic.001G160000 LSTK-1-like kinase, putative, expressed K08857: NIMA (never in mitosis gene a)-related kinase 1/4/5
14 Sobic.001G381100 receptor-like protein kinase precursor, putative, expressed -
15 Sobic.010G024500 expressed protein -
16 Sobic.009G225500 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
17 Sobic.004G269100 ATROPGEF7/ROPGEF7, putative, expressed -
18 Sobic.006G050900 expressed protein -
19 Sobic.005G092700 expressed protein -
20 Sobic.003G222800 lipase, putative, expressed -


Gene co-expression network
sample Sobic003G041900 Sobic003G041900 Sobic004G164700 Sobic004G164700 Sobic003G041900--Sobic004G164700 Sobic010G023400 Sobic010G023400 Sobic003G041900--Sobic010G023400 Sobic010G192500 Sobic010G192500 Sobic003G041900--Sobic010G192500 Sobic006G241800 Sobic006G241800 Sobic003G041900--Sobic006G241800 Sobic010G086000 Sobic010G086000 Sobic003G041900--Sobic010G086000 Sobic008G190000 Sobic008G190000 Sobic003G041900--Sobic008G190000 Sobic004G317200 Sobic004G317200 Sobic003G041900--Sobic004G317200 Sobic006G142500 Sobic006G142500 Sobic003G041900--Sobic006G142500 Sobic006G211900 Sobic006G211900 Sobic003G041900--Sobic006G211900 Sobic004G164700--Sobic006G241800 Sobic002G362700 Sobic002G362700 Sobic004G164700--Sobic002G362700 Sobic004G164700--Sobic008G190000 Sobic001G461800 Sobic001G461800 Sobic004G164700--Sobic001G461800 Sobic004G164700--Sobic006G142500 Sobic010G024500 Sobic010G024500 Sobic004G164700--Sobic010G024500 Sobic004G164700--Sobic003G041900 Sobic001G425700 Sobic001G425700 Sobic004G164700--Sobic001G425700 Sobic004G164700--Sobic010G086000 Sobic004G234500 Sobic004G234500 Sobic010G023400--Sobic004G234500 Sobic010G241100 Sobic010G241100 Sobic010G023400--Sobic010G241100 Sobic002G337600 Sobic002G337600 Sobic010G023400--Sobic002G337600 Sobic010G023400--Sobic010G192500 Sobic003G283900 Sobic003G283900 Sobic010G023400--Sobic003G283900 Sobic006G058000 Sobic006G058000 Sobic010G023400--Sobic006G058000 Sobic001G046400 Sobic001G046400 Sobic010G023400--Sobic001G046400 Sobic010G023400--Sobic003G041900 Sobic006G274200 Sobic006G274200 Sobic010G023400--Sobic006G274200 Sobic009G060800 Sobic009G060800 Sobic010G192500--Sobic009G060800 Sobic003G089300 Sobic003G089300 Sobic010G192500--Sobic003G089300 Sobic010G192500--Sobic002G337600 Sobic003G366000 Sobic003G366000 Sobic010G192500--Sobic003G366000 Sobic010G192500--Sobic010G241100 Sobic001G155700 Sobic001G155700 Sobic010G192500--Sobic001G155700 Sobic001G493900 Sobic001G493900 Sobic010G192500--Sobic001G493900 Sobic002G319300 Sobic002G319300 Sobic010G192500--Sobic002G319300 Sobic009G208300 Sobic009G208300 Sobic010G192500--Sobic009G208300 Sobic003G291000 Sobic003G291000 Sobic006G241800--Sobic003G291000 Sobic003G018700 Sobic003G018700 Sobic006G241800--Sobic003G018700 Sobic006G241800--Sobic004G317200 Sobic006G241800--Sobic004G164700 Sobic006G241800--Sobic010G024500 Sobic002G311000 Sobic002G311000 Sobic006G241800--Sobic002G311000 Sobic010G020600 Sobic010G020600 Sobic006G241800--Sobic010G020600 Sobic001G381100 Sobic001G381100 Sobic006G241800--Sobic001G381100 Sobic001G074100 Sobic001G074100 Sobic006G241800--Sobic001G074100 Sobic010G086000--Sobic006G142500 Sobic003G032200 Sobic003G032200 Sobic010G086000--Sobic003G032200 Sobic010G086000--Sobic010G241100 Sobic001G452900 Sobic001G452900 Sobic010G086000--Sobic001G452900 Sobic010G086000--Sobic010G192500 Sobic010G086000--Sobic004G234500 Sobic004G267600 Sobic004G267600 Sobic010G086000--Sobic004G267600 Sobic002G284100 Sobic002G284100 Sobic010G086000--Sobic002G284100 Sobic001G054700 Sobic001G054700 Sobic010G086000--Sobic001G054700 Sobic008G190000--Sobic001G381100 Sobic005G092700 Sobic005G092700 Sobic008G190000--Sobic005G092700 Sobic001G160000 Sobic001G160000 Sobic008G190000--Sobic001G160000 Sobic008G190000--Sobic010G024500 Sobic008G190000--Sobic003G366000 Sobic008G042200 Sobic008G042200 Sobic008G190000--Sobic008G042200 Sobic002G286700 Sobic002G286700 Sobic008G190000--Sobic002G286700 Sobic009G200000 Sobic009G200000 Sobic008G190000--Sobic009G200000 Sobic004G115700 Sobic004G115700 Sobic008G190000--Sobic004G115700 Sobic004G317200--Sobic010G020600 Sobic004G357000 Sobic004G357000 Sobic004G317200--Sobic004G357000 Sobic001G470200 Sobic001G470200 Sobic004G317200--Sobic001G470200 Sobic004G317200--Sobic003G089300 Sobic001G390400 Sobic001G390400 Sobic004G317200--Sobic001G390400 Sobic004G317200--Sobic006G241800 Sobic007G211200 Sobic007G211200 Sobic004G317200--Sobic007G211200 Sobic007G160300 Sobic007G160300 Sobic004G317200--Sobic007G160300 Sobic004G317200--Sobic006G058000 Sobic006G142500--Sobic010G086000 Sobic006G142500--Sobic004G267600 Sobic006G142500--Sobic010G192500 Sobic009G225500 Sobic009G225500 Sobic006G142500--Sobic009G225500 Sobic006G142500--Sobic003G032200 Sobic006G142500--Sobic004G234500 Sobic009G127800 Sobic009G127800 Sobic006G142500--Sobic009G127800 Sobic009G047000 Sobic009G047000 Sobic006G142500--Sobic009G047000 Sobic006G142500--Sobic001G390400 Sobic009G099150 Sobic009G099150 Sobic006G211900--Sobic009G099150 Sobic002G317700 Sobic002G317700 Sobic006G211900--Sobic002G317700 Sobic009G057800 Sobic009G057800 Sobic006G211900--Sobic009G057800 Sobic006G211900--Sobic003G041900 Sobic006G211900--Sobic006G142500 Sobic002G279400 Sobic002G279400 Sobic006G211900--Sobic002G279400 Sobic006G211900--Sobic001G054700 Sobic005G153000 Sobic005G153000 Sobic006G211900--Sobic005G153000 Sobic006G211900--Sobic004G234500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.