Gene annotation
Transcriptome id Sobic.007G070000.4,Sobic.007G070000.1,Sobic.007G070000.3,Sobic.007G070000.5,Sobic.007G070000.2
Synonym GPS1, GPPS, Sb07g005530
Functional annotation polyprenyl synthetase, putative, expressed
UniProt A0A1Z5R8F1 , A0A1B6PGG2
Pfam PF00348
Panther DB PTHR12001 PTHR12001:SF47
NCBI CDD KOG0776; Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase
KEGG Orthology K14066; geranyl diphosphate synthase
Gene Ontology GO:0008299; isoprenoid biosynthetic process


Orthologs (automatic annotation)
TAIR AT2G34630 : geranyl diphosphate synthase 1
RAP-DB (Rice) LOC_Os08g09370.1 : polyprenyl synthetase, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat TraesCS6A02G066000 , TraesCS6B02G089300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G311600 periplasmic beta-glucosidase precursor, putative, expressed K05349: beta-glucosidase
2 Sobic.002G340200 expressed protein -
3 Sobic.010G134500 exonuclease, putative, expressed -
4 Sobic.008G088842 - -
5 Sobic.003G223000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
6 Sobic.001G300900 expansin precursor, putative, expressed -
7 Sobic.010G091200 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
8 Sobic.004G354000 OsSigP1 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/His catalytic dyad, expressed -
9 Sobic.006G275000 tubulin/FtsZ domain containing protein, putative, expressed K03531: cell division protein FtsZ
10 Sobic.006G030100 acetyl-CoA carboxylase, putative, expressed K11262: acetyl-CoA carboxylase / biotin carboxylase 1
11 Sobic.010G279300 phosphatidylinositol-4-phosphate 5-Kinase, putative, expressed -
12 Sobic.008G123300 AAA-type ATPase family protein, putative, expressed -
13 Sobic.002G162500 - -
14 Sobic.005G132400 lysosomal alpha-mannosidase precursor, putative, expressed K01191: alpha-mannosidase
15 Sobic.003G177000 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
16 Sobic.008G186500 FGGY family of carbohydrate kinases, putative, expressed K00854: xylB, xylulokinase
17 Sobic.001G258900 - -
18 Sobic.007G094500 KH domain containing protein, putative, expressed -
19 Sobic.002G141900 -(PubMedID : 26976818)@Citrate transporter protein, putative, expressed -
20 Sobic.002G425200 expressed protein -


Gene co-expression network
sample Sobic007G070000 Sobic007G070000 Sobic003G311600 Sobic003G311600 Sobic007G070000--Sobic003G311600 Sobic002G340200 Sobic002G340200 Sobic007G070000--Sobic002G340200 Sobic010G134500 Sobic010G134500 Sobic007G070000--Sobic010G134500 Sobic008G088842 Sobic008G088842 Sobic007G070000--Sobic008G088842 Sobic003G223000 Sobic003G223000 Sobic007G070000--Sobic003G223000 Sobic001G300900 Sobic001G300900 Sobic007G070000--Sobic001G300900 Sobic010G091200 Sobic010G091200 Sobic007G070000--Sobic010G091200 Sobic004G354000 Sobic004G354000 Sobic007G070000--Sobic004G354000 Sobic006G275000 Sobic006G275000 Sobic007G070000--Sobic006G275000 Sobic003G311600--Sobic007G070000 Sobic003G311600--Sobic008G088842 Sobic003G104100 Sobic003G104100 Sobic003G311600--Sobic003G104100 Sobic001G165801 Sobic001G165801 Sobic003G311600--Sobic001G165801 Sobic006G236000 Sobic006G236000 Sobic003G311600--Sobic006G236000 Sobic003G311600--Sobic002G340200 Sobic007G094500 Sobic007G094500 Sobic003G311600--Sobic007G094500 Sobic003G135500 Sobic003G135500 Sobic003G311600--Sobic003G135500 Sobic002G162500 Sobic002G162500 Sobic003G311600--Sobic002G162500 Sobic002G340200--Sobic007G070000 Sobic002G340200--Sobic008G088842 Sobic002G340200--Sobic002G162500 Sobic002G340200--Sobic003G311600 Sobic010G089800 Sobic010G089800 Sobic002G340200--Sobic010G089800 Sobic002G051800 Sobic002G051800 Sobic002G340200--Sobic002G051800 Sobic002G340200--Sobic001G300900 Sobic007G159200 Sobic007G159200 Sobic002G340200--Sobic007G159200 Sobic010G138900 Sobic010G138900 Sobic002G340200--Sobic010G138900 Sobic009G210100 Sobic009G210100 Sobic010G134500--Sobic009G210100 Sobic001G104300 Sobic001G104300 Sobic010G134500--Sobic001G104300 Sobic002G078000 Sobic002G078000 Sobic010G134500--Sobic002G078000 Sobic010G134500--Sobic007G070000 Sobic003G267500 Sobic003G267500 Sobic010G134500--Sobic003G267500 Sobic003G420900 Sobic003G420900 Sobic010G134500--Sobic003G420900 Sobic005G022000 Sobic005G022000 Sobic010G134500--Sobic005G022000 Sobic002G363500 Sobic002G363500 Sobic010G134500--Sobic002G363500 Sobic001G161400 Sobic001G161400 Sobic010G134500--Sobic001G161400 Sobic008G088842--Sobic010G138900 Sobic006G140600 Sobic006G140600 Sobic008G088842--Sobic006G140600 Sobic002G143200 Sobic002G143200 Sobic008G088842--Sobic002G143200 Sobic010G262100 Sobic010G262100 Sobic008G088842--Sobic010G262100 Sobic008G088842--Sobic003G311600 Sobic001G451300 Sobic001G451300 Sobic008G088842--Sobic001G451300 Sobic006G280100 Sobic006G280100 Sobic008G088842--Sobic006G280100 Sobic006G208400 Sobic006G208400 Sobic008G088842--Sobic006G208400 Sobic008G088842--Sobic002G340200 Sobic003G333700 Sobic003G333700 Sobic003G223000--Sobic003G333700 Sobic003G223000--Sobic002G078000 Sobic008G101900 Sobic008G101900 Sobic003G223000--Sobic008G101900 Sobic009G002900 Sobic009G002900 Sobic003G223000--Sobic009G002900 Sobic009G177200 Sobic009G177200 Sobic003G223000--Sobic009G177200 Sobic009G231100 Sobic009G231100 Sobic003G223000--Sobic009G231100 Sobic003G223000--Sobic001G165801 Sobic003G223000--Sobic001G104300 Sobic002G272400 Sobic002G272400 Sobic003G223000--Sobic002G272400 Sobic001G300900--Sobic002G162500 Sobic001G300900--Sobic006G208400 Sobic006G269800 Sobic006G269800 Sobic001G300900--Sobic006G269800 Sobic003G361400 Sobic003G361400 Sobic001G300900--Sobic003G361400 Sobic004G119400 Sobic004G119400 Sobic001G300900--Sobic004G119400 Sobic007G011600 Sobic007G011600 Sobic001G300900--Sobic007G011600 Sobic001G300900--Sobic008G088842 Sobic003G341700 Sobic003G341700 Sobic001G300900--Sobic003G341700 Sobic008G017100 Sobic008G017100 Sobic001G300900--Sobic008G017100 Sobic005G184300 Sobic005G184300 Sobic010G091200--Sobic005G184300 Sobic004G040600 Sobic004G040600 Sobic010G091200--Sobic004G040600 Sobic002G065200 Sobic002G065200 Sobic010G091200--Sobic002G065200 Sobic003G128400 Sobic003G128400 Sobic010G091200--Sobic003G128400 Sobic002G297400 Sobic002G297400 Sobic010G091200--Sobic002G297400 Sobic003G439000 Sobic003G439000 Sobic010G091200--Sobic003G439000 Sobic003G265500 Sobic003G265500 Sobic010G091200--Sobic003G265500 Sobic001G514100 Sobic001G514100 Sobic010G091200--Sobic001G514100 Sobic006G256600 Sobic006G256600 Sobic010G091200--Sobic006G256600 Sobic004G354000--Sobic006G208400 Sobic004G342300 Sobic004G342300 Sobic004G354000--Sobic004G342300 Sobic004G354000--Sobic008G017100 Sobic002G356600 Sobic002G356600 Sobic004G354000--Sobic002G356600 Sobic001G322600 Sobic001G322600 Sobic004G354000--Sobic001G322600 Sobic002G079100 Sobic002G079100 Sobic004G354000--Sobic002G079100 Sobic004G356200 Sobic004G356200 Sobic004G354000--Sobic004G356200 Sobic001G027100 Sobic001G027100 Sobic004G354000--Sobic001G027100 Sobic004G354000--Sobic006G236000 Sobic009G005400 Sobic009G005400 Sobic006G275000--Sobic009G005400 Sobic009G105200 Sobic009G105200 Sobic006G275000--Sobic009G105200 Sobic001G393900 Sobic001G393900 Sobic006G275000--Sobic001G393900 Sobic006G275000--Sobic008G017100 Sobic005G026400 Sobic005G026400 Sobic006G275000--Sobic005G026400 Sobic006G275000--Sobic004G354000 Sobic007G225000 Sobic007G225000 Sobic006G275000--Sobic007G225000 Sobic006G275000--Sobic010G262100 Sobic010G224700 Sobic010G224700 Sobic006G275000--Sobic010G224700
Octagon: transcription factors


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