Gene annotation
Transcriptome id Sobic.003G306400.2,Sobic.003G306400.1
Synonym
Functional annotation holliday junction resolvase, putative, expressed
UniProt A0A1B6Q696
Pfam PF03652
Panther DB PTHR33317 PTHR33317:SF1
NCBI CDD -
KEGG Orthology K07447; putative holliday junction resolvase
Gene Ontology GO:0006310; DNA recombination


Orthologs (automatic annotation)
TAIR AT3G52905 : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
RAP-DB (Rice) LOC_Os01g55900.1 : holliday junction resolvase, putative, expressed
MaizeGDB (Corn) Zm00025a027439
Brachypodium PNT72911 , PNT72910 , PNT72913 , PNT72912 , KQK09903 , PNT72914 , KQK09901 , PNT72909 , KQK09900 , KQK09895 , KQK09897 , KQK09896 , KQK09898 , KQK09899 , KQK09902
Barley HORVU3Hr1G074190.4 , HORVU3Hr1G074190.5 , HORVU3Hr1G074190.6 , HORVU3Hr1G074190.7 , HORVU3Hr1G074190.1 , HORVU3Hr1G074190.2 , HORVU3Hr1G074190.3 , HORVU3Hr1G074190.8 , HORVU3Hr1G074190.9 , HORVU3Hr1G074190.14 , HORVU3Hr1G074190.15 , HORVU3Hr1G074190.12 , HORVU3Hr1G074190.13 , HORVU3Hr1G074190.10 , HORVU3Hr1G074190.11 , HORVU3Hr1G074130.2 , HORVU3Hr1G074130.1
Wheat TraesCS3D02G300500 , TraesCS3B02G335200 , TraesCS3B02G335200 , TraesCS3A02G301400 , TraesCS3A02G301400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G322300 nucleotide binding protein, putative, expressed K03351: anaphase-promoting complex subunit 4
2 Sobic.001G191900 mitochondrial carrier protein, putative, expressed K15109: SLC25A20_29, CACT, CACL, solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29
3 Sobic.003G129300 uridine kinase, putative, expressed -
4 Sobic.009G113900 expressed protein -
5 Sobic.001G027500 haloacid dehalogenase-like hydrolase family protein, putative, expressed -
6 Sobic.001G039300 GTPase of unknown function domain containing protein, putative, expressed -
7 Sobic.009G254100 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
8 Sobic.002G116500 methyltransferase, putative, expressed K00599: methyltransferase-like protein 6
9 Sobic.002G208400 regulator protein, putative, expressed -
10 Sobic.003G222700 similar to DEAD-box ATP-dependent RNA helicase 26(PubMedID : 29862293)@- K17679: ATP-dependent RNA helicase MSS116, mitochondrial
11 Sobic.006G106600 arsenical pump-driving ATPase, putative, expressed K01551: arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase
12 Sobic.001G537400 MYB family transcription factor, putative, expressed -
13 Sobic.001G203500 pentatricopeptide, putative, expressed -
14 Sobic.003G122800 translin, putative, expressed -
15 Sobic.007G051400 transmembrane 9 superfamily member, putative, expressed -
16 Sobic.002G142700 PPR repeat containing protein, putative, expressed -
17 Sobic.010G065600 expressed protein -
18 Sobic.003G023200 DNA repair protein Rad51, putative, expressed K10870: RAD51L2, RAD51-like protein 2
19 Sobic.003G376500 SET domain containing protein, expressed K05302: N-lysine methyltransferase SETD6
20 Sobic.008G111600 heat shock protein, putative, expressed K09487: HSP90B, heat shock protein 90kDa beta


Gene co-expression network
sample Sobic003G306400 Sobic003G306400 Sobic004G322300 Sobic004G322300 Sobic003G306400--Sobic004G322300 Sobic001G191900 Sobic001G191900 Sobic003G306400--Sobic001G191900 Sobic003G129300 Sobic003G129300 Sobic003G306400--Sobic003G129300 Sobic009G113900 Sobic009G113900 Sobic003G306400--Sobic009G113900 Sobic001G027500 Sobic001G027500 Sobic003G306400--Sobic001G027500 Sobic001G039300 Sobic001G039300 Sobic003G306400--Sobic001G039300 Sobic009G254100 Sobic009G254100 Sobic003G306400--Sobic009G254100 Sobic002G116500 Sobic002G116500 Sobic003G306400--Sobic002G116500 Sobic002G208400 Sobic002G208400 Sobic003G306400--Sobic002G208400 Sobic002G371600 Sobic002G371600 Sobic004G322300--Sobic002G371600 Sobic003G388000 Sobic003G388000 Sobic004G322300--Sobic003G388000 Sobic004G315500 Sobic004G315500 Sobic004G322300--Sobic004G315500 Sobic009G134900 Sobic009G134900 Sobic004G322300--Sobic009G134900 Sobic010G081700 Sobic010G081700 Sobic004G322300--Sobic010G081700 Sobic006G178100 Sobic006G178100 Sobic004G322300--Sobic006G178100 Sobic008G111600 Sobic008G111600 Sobic004G322300--Sobic008G111600 Sobic002G160700 Sobic002G160700 Sobic004G322300--Sobic002G160700 Sobic004G322300--Sobic003G306400 Sobic006G106600 Sobic006G106600 Sobic001G191900--Sobic006G106600 Sobic001G229300 Sobic001G229300 Sobic001G191900--Sobic001G229300 Sobic004G277400 Sobic004G277400 Sobic001G191900--Sobic004G277400 Sobic002G153400 Sobic002G153400 Sobic001G191900--Sobic002G153400 Sobic007G022700 Sobic007G022700 Sobic001G191900--Sobic007G022700 Sobic007G051400 Sobic007G051400 Sobic001G191900--Sobic007G051400 Sobic009G120400 Sobic009G120400 Sobic001G191900--Sobic009G120400 Sobic004G354100 Sobic004G354100 Sobic001G191900--Sobic004G354100 Sobic002G426100 Sobic002G426100 Sobic001G191900--Sobic002G426100 Sobic003G129300--Sobic001G229300 Sobic001G123600 Sobic001G123600 Sobic003G129300--Sobic001G123600 Sobic002G142700 Sobic002G142700 Sobic003G129300--Sobic002G142700 Sobic010G065600 Sobic010G065600 Sobic003G129300--Sobic010G065600 Sobic003G129300--Sobic002G208400 Sobic009G063800 Sobic009G063800 Sobic003G129300--Sobic009G063800 Sobic003G119900 Sobic003G119900 Sobic003G129300--Sobic003G119900 Sobic003G129300--Sobic001G191900 Sobic001G465500 Sobic001G465500 Sobic003G129300--Sobic001G465500 Sobic005G068800 Sobic005G068800 Sobic009G113900--Sobic005G068800 Sobic001G460100 Sobic001G460100 Sobic009G113900--Sobic001G460100 Sobic001G199500 Sobic001G199500 Sobic009G113900--Sobic001G199500 Sobic001G507000 Sobic001G507000 Sobic009G113900--Sobic001G507000 Sobic005G088900 Sobic005G088900 Sobic009G113900--Sobic005G088900 Sobic002G215200 Sobic002G215200 Sobic009G113900--Sobic002G215200 Sobic006G281900 Sobic006G281900 Sobic009G113900--Sobic006G281900 Sobic006G051000 Sobic006G051000 Sobic009G113900--Sobic006G051000 Sobic001G122100 Sobic001G122100 Sobic009G113900--Sobic001G122100 Sobic010G257000 Sobic010G257000 Sobic001G027500--Sobic010G257000 Sobic002G168000 Sobic002G168000 Sobic001G027500--Sobic002G168000 Sobic008G063600 Sobic008G063600 Sobic001G027500--Sobic008G063600 Sobic004G222200 Sobic004G222200 Sobic001G027500--Sobic004G222200 Sobic006G226000 Sobic006G226000 Sobic001G027500--Sobic006G226000 Sobic006G262501 Sobic006G262501 Sobic001G027500--Sobic006G262501 Sobic002G055800 Sobic002G055800 Sobic001G027500--Sobic002G055800 Sobic007G187700 Sobic007G187700 Sobic001G027500--Sobic007G187700 Sobic005G153000 Sobic005G153000 Sobic001G027500--Sobic005G153000 Sobic009G105400 Sobic009G105400 Sobic001G039300--Sobic009G105400 Sobic004G031300 Sobic004G031300 Sobic001G039300--Sobic004G031300 Sobic005G120700 Sobic005G120700 Sobic001G039300--Sobic005G120700 Sobic001G024000 Sobic001G024000 Sobic001G039300--Sobic001G024000 Sobic006G059500 Sobic006G059500 Sobic001G039300--Sobic006G059500 Sobic006G140400 Sobic006G140400 Sobic001G039300--Sobic006G140400 Sobic010G269300 Sobic010G269300 Sobic001G039300--Sobic010G269300 Sobic010G172400 Sobic010G172400 Sobic001G039300--Sobic010G172400 Sobic009G032200 Sobic009G032200 Sobic001G039300--Sobic009G032200 Sobic006G106300 Sobic006G106300 Sobic009G254100--Sobic006G106300 Sobic003G256800 Sobic003G256800 Sobic009G254100--Sobic003G256800 Sobic009G254100--Sobic006G178100 Sobic003G143800 Sobic003G143800 Sobic009G254100--Sobic003G143800 Sobic002G381900 Sobic002G381900 Sobic009G254100--Sobic002G381900 Sobic001G097900 Sobic001G097900 Sobic009G254100--Sobic001G097900 Sobic002G398700 Sobic002G398700 Sobic009G254100--Sobic002G398700 Sobic005G026400 Sobic005G026400 Sobic009G254100--Sobic005G026400 Sobic003G146600 Sobic003G146600 Sobic009G254100--Sobic003G146600 Sobic001G193500 Sobic001G193500 Sobic002G116500--Sobic001G193500 Sobic008G016100 Sobic008G016100 Sobic002G116500--Sobic008G016100 Sobic003G118400 Sobic003G118400 Sobic002G116500--Sobic003G118400 Sobic004G247100 Sobic004G247100 Sobic002G116500--Sobic004G247100 Sobic001G382200 Sobic001G382200 Sobic002G116500--Sobic001G382200 Sobic003G408300 Sobic003G408300 Sobic002G116500--Sobic003G408300 Sobic006G084000 Sobic006G084000 Sobic002G116500--Sobic006G084000 Sobic002G144275 Sobic002G144275 Sobic002G116500--Sobic002G144275 Sobic009G195700 Sobic009G195700 Sobic002G116500--Sobic009G195700 Sobic002G208400--Sobic002G142700 Sobic001G115500 Sobic001G115500 Sobic002G208400--Sobic001G115500 Sobic009G113100 Sobic009G113100 Sobic002G208400--Sobic009G113100 Sobic006G032600 Sobic006G032600 Sobic002G208400--Sobic006G032600 Sobic003G008600 Sobic003G008600 Sobic002G208400--Sobic003G008600 Sobic004G030400 Sobic004G030400 Sobic002G208400--Sobic004G030400 Sobic003G259600 Sobic003G259600 Sobic002G208400--Sobic003G259600 Sobic002G208400--Sobic001G123600 Sobic002G208400--Sobic003G129300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.