Gene annotation
Transcriptome id Sobic.002G268100.1
Synonym Sb02g030210, PRH75
Functional annotation -
UniProt C5X615
Pfam PF00271 PF08152 PF00270
Panther DB PTHR24031 PTHR24031:SF330
NCBI CDD KOG0331; ATP-dependent RNA helicase
KEGG Orthology K16911; ATP-dependent RNA helicase DDX21
Gene Ontology GO:0005634; nucleus GO:0005524ATP binding GO:0004386helicase activity GO:0003723RNA binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G62190 : DEAD box RNA helicase (PRH75)
RAP-DB (Rice) LOC_Os09g34910.1 : DEAD-box ATP-dependent RNA helicase 7, putative, expressed
MaizeGDB (Corn) Zm00025a041052 , Zm00025a050842 , Zm00025a052032 , Zm00025a014373 , Zm00025a047695
Brachypodium -
Barley HORVU5Hr1G080170.2 , HORVU5Hr1G080170.1
Wheat TraesCS5D02G315900 , TraesCS5D02G315900 , TraesCS7B02G320000 , TraesCS5B02G309500 , TraesCS5A02G308900 , TraesCS5A02G308900
Populus -


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cDNA sequences
Sobic.002G268100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G010300 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family
2 Sobic.001G372800 nucleolar protein NOP5-1, putative, expressed K14565: nucleolar protein 58
3 Sobic.001G483800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tubulin--tyrosine ligase-like protein 12, putative, expressed K16609: tubulin--tyrosine ligase-like protein 12
4 Sobic.004G082700 PPR repeat containing protein, expressed -
5 Sobic.010G038800 NAP domain containing protein, putative, expressed K11279: NAP1L1, nucleosome assembly protein 1-like 1
6 Sobic.003G322200 membrane-associated salt-inducible protein, putative, expressed -
7 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
8 Sobic.010G252700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cullin family domain containing protein, putative, expressed K03349: anaphase-promoting complex subunit 2
9 Sobic.002G362200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MSH-like DNA mismatch repair protein, putative, expressed K08735: DNA mismatch repair protein MSH2
10 Sobic.009G191500 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
11 Sobic.003G432300 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein K14794: ribosomal RNA-processing protein 12
12 Sobic.003G412000 tRNA methyltransferase, putative, expressed K03256: TRM6, tRNA (adenine58-N1)-methyltransferase non-catalytic subunit
13 Sobic.001G408300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.003G144000 pentatricopeptide, putative, expressed -
15 Sobic.008G068100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
16 Sobic.003G336500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KH domain containing protein, putative, expressed K14945: protein quaking
17 Sobic.007G092200 aspartate carbamoyltransferase, putative, expressed K00609: pyrB, aspartate carbamoyltransferase catalytic subunit
18 Sobic.008G083400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@argininosuccinate synthase, chloroplast precursor, putative, expressed K01940: argG, argininosuccinate synthase
19 Sobic.005G088900 AGAP007117-PA, putative, expressed -
20 Sobic.001G167500 ribosomal protein L25, putative, expressed K02897: RP-L25, large subunit ribosomal protein L25


Gene co-expression network
sample Sobic002G268100 Sobic002G268100 Sobic009G010300 Sobic009G010300 Sobic002G268100--Sobic009G010300 Sobic001G372800 Sobic001G372800 Sobic002G268100--Sobic001G372800 Sobic001G483800 Sobic001G483800 Sobic002G268100--Sobic001G483800 Sobic004G082700 Sobic004G082700 Sobic002G268100--Sobic004G082700 Sobic010G038800 Sobic010G038800 Sobic002G268100--Sobic010G038800 Sobic003G322200 Sobic003G322200 Sobic002G268100--Sobic003G322200 Sobic003G123200 Sobic003G123200 Sobic002G268100--Sobic003G123200 Sobic010G252700 Sobic010G252700 Sobic002G268100--Sobic010G252700 Sobic002G362200 Sobic002G362200 Sobic002G268100--Sobic002G362200 Sobic009G010300--Sobic002G268100 Sobic009G010300--Sobic001G483800 Sobic009G010300--Sobic001G372800 Sobic008G068100 Sobic008G068100 Sobic009G010300--Sobic008G068100 Sobic009G010300--Sobic003G123200 Sobic001G408300 Sobic001G408300 Sobic009G010300--Sobic001G408300 Sobic010G065800 Sobic010G065800 Sobic009G010300--Sobic010G065800 Sobic008G090000 Sobic008G090000 Sobic009G010300--Sobic008G090000 Sobic009G191500 Sobic009G191500 Sobic009G010300--Sobic009G191500 Sobic001G372800--Sobic001G483800 Sobic001G372800--Sobic002G268100 Sobic001G372800--Sobic003G322200 Sobic001G372800--Sobic009G010300 Sobic001G372800--Sobic009G191500 Sobic001G401400 Sobic001G401400 Sobic001G372800--Sobic001G401400 Sobic001G372800--Sobic010G038800 Sobic005G028100 Sobic005G028100 Sobic001G372800--Sobic005G028100 Sobic003G432300 Sobic003G432300 Sobic001G372800--Sobic003G432300 Sobic001G483800--Sobic001G372800 Sobic001G483800--Sobic009G191500 Sobic001G483800--Sobic008G068100 Sobic001G483800--Sobic002G268100 Sobic001G483800--Sobic009G010300 Sobic003G336500 Sobic003G336500 Sobic001G483800--Sobic003G336500 Sobic001G483800--Sobic005G028100 Sobic005G088900 Sobic005G088900 Sobic001G483800--Sobic005G088900 Sobic001G483800--Sobic003G322200 Sobic008G100700 Sobic008G100700 Sobic004G082700--Sobic008G100700 Sobic001G167500 Sobic001G167500 Sobic004G082700--Sobic001G167500 Sobic010G134100 Sobic010G134100 Sobic004G082700--Sobic010G134100 Sobic003G144000 Sobic003G144000 Sobic004G082700--Sobic003G144000 Sobic001G371100 Sobic001G371100 Sobic004G082700--Sobic001G371100 Sobic004G082700--Sobic002G268100 Sobic005G098000 Sobic005G098000 Sobic004G082700--Sobic005G098000 Sobic001G008500 Sobic001G008500 Sobic004G082700--Sobic001G008500 Sobic001G493400 Sobic001G493400 Sobic004G082700--Sobic001G493400 Sobic004G215900 Sobic004G215900 Sobic010G038800--Sobic004G215900 Sobic010G038800--Sobic003G144000 Sobic010G038800--Sobic009G191500 Sobic010G153300 Sobic010G153300 Sobic010G038800--Sobic010G153300 Sobic010G038800--Sobic001G408300 Sobic010G038800--Sobic001G372800 Sobic010G038800--Sobic003G322200 Sobic010G038800--Sobic003G123200 Sobic010G038800--Sobic008G068100 Sobic003G322200--Sobic001G372800 Sobic003G322200--Sobic001G401400 Sobic003G322200--Sobic003G123200 Sobic003G412000 Sobic003G412000 Sobic003G322200--Sobic003G412000 Sobic003G322200--Sobic010G038800 Sobic006G198600 Sobic006G198600 Sobic003G322200--Sobic006G198600 Sobic003G322200--Sobic003G336500 Sobic002G344500 Sobic002G344500 Sobic003G322200--Sobic002G344500 Sobic003G322200--Sobic001G483800 Sobic005G098800 Sobic005G098800 Sobic003G123200--Sobic005G098800 Sobic008G163500 Sobic008G163500 Sobic003G123200--Sobic008G163500 Sobic010G205900 Sobic010G205900 Sobic003G123200--Sobic010G205900 Sobic009G246500 Sobic009G246500 Sobic003G123200--Sobic009G246500 Sobic008G049100 Sobic008G049100 Sobic003G123200--Sobic008G049100 Sobic003G123200--Sobic005G028100 Sobic002G423400 Sobic002G423400 Sobic003G123200--Sobic002G423400 Sobic003G123200--Sobic006G198600 Sobic010G224700 Sobic010G224700 Sobic003G123200--Sobic010G224700 Sobic008G179000 Sobic008G179000 Sobic010G252700--Sobic008G179000 Sobic007G123100 Sobic007G123100 Sobic010G252700--Sobic007G123100 Sobic009G052100 Sobic009G052100 Sobic010G252700--Sobic009G052100 Sobic010G252700--Sobic002G362200 Sobic001G149100 Sobic001G149100 Sobic010G252700--Sobic001G149100 Sobic008G031200 Sobic008G031200 Sobic010G252700--Sobic008G031200 Sobic010G252700--Sobic008G090000 Sobic006G071628 Sobic006G071628 Sobic010G252700--Sobic006G071628 Sobic010G250800 Sobic010G250800 Sobic010G252700--Sobic010G250800 Sobic008G111600 Sobic008G111600 Sobic002G362200--Sobic008G111600 Sobic002G362200--Sobic010G252700 Sobic002G362200--Sobic008G090000 Sobic002G362200--Sobic008G179000 Sobic002G426100 Sobic002G426100 Sobic002G362200--Sobic002G426100 Sobic001G537400 Sobic001G537400 Sobic002G362200--Sobic001G537400 Sobic001G268300 Sobic001G268300 Sobic002G362200--Sobic001G268300 Sobic002G362200--Sobic008G031200 Sobic003G147500 Sobic003G147500 Sobic002G362200--Sobic003G147500
Octagon: transcription factors


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