Gene annotation
Transcriptome id Sobic.004G226900.2
Synonym Sb04g027130
Functional annotation expressed protein
UniProt A0A194YRD6
Pfam -
Panther DB PTHR34568
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G58210 : hydroxyproline-rich glycoprotein family protein
RAP-DB (Rice) LOC_Os02g42550.1 : expressed protein
MaizeGDB (Corn) Zm00025a032099 , Zm00025a021011
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G185600 methyltransferase domain containing protein, expressed K15190: MEPCE, 7SK snRNA methylphosphate capping enzyme
2 Sobic.004G227100 survival motor neuron containing protein, expressed K13130: GEMIN2, gem associated protein 2
3 Sobic.005G178700 OsFBX135 - F-box domain containing protein, expressed -
4 Sobic.006G111200 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
5 Sobic.001G061800 RFC3 - Putative clamp loader of PCNA, replication factor C subunit 3, expressed K10756: replication factor C subunit 3/5
6 Sobic.003G189333 - -
7 Sobic.001G401400 NUC189 domain containing protein, expressed K14546: UTP5, U3 small nucleolar RNA-associated protein 5
8 Sobic.003G223500 WD domain, G-beta repeat domain containing protein, expressed K14299: nucleoporin SEH1
9 Sobic.001G081300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
10 Sobic.006G271900 DNA mismatch repair protein MSH3, putative, expressed K08736: DNA mismatch repair protein MSH3
11 Sobic.007G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
12 Sobic.002G192500 ES43 protein, putative, expressed -
13 Sobic.001G453500 expressed protein -
14 Sobic.002G399200 - K14779: DDX52, ATP-dependent RNA helicase DDX52/ROK1
15 Sobic.009G238700 EMB2744, putative, expressed -
16 Sobic.002G380100 PPR repeat containing protein, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
17 Sobic.006G059500 expressed protein K13150: COIL, coilin
18 Sobic.010G083900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsPOP12 - Putative Prolyl Oligopeptidase homologue, expressed -
19 Sobic.009G155400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
20 Sobic.004G036700 arginine N-methyltransferase 5, putative, expressed K02516: PRMT5, type II protein arginine methyltransferase


Gene co-expression network
sample Sobic004G226900 Sobic004G226900 Sobic007G185600 Sobic007G185600 Sobic004G226900--Sobic007G185600 Sobic004G227100 Sobic004G227100 Sobic004G226900--Sobic004G227100 Sobic005G178700 Sobic005G178700 Sobic004G226900--Sobic005G178700 Sobic006G111200 Sobic006G111200 Sobic004G226900--Sobic006G111200 Sobic001G061800 Sobic001G061800 Sobic004G226900--Sobic001G061800 Sobic003G189333 Sobic003G189333 Sobic004G226900--Sobic003G189333 Sobic001G401400 Sobic001G401400 Sobic004G226900--Sobic001G401400 Sobic003G223500 Sobic003G223500 Sobic004G226900--Sobic003G223500 Sobic001G081300 Sobic001G081300 Sobic004G226900--Sobic001G081300 Sobic007G060600 Sobic007G060600 Sobic007G185600--Sobic007G060600 Sobic004G036700 Sobic004G036700 Sobic007G185600--Sobic004G036700 Sobic007G185600--Sobic001G401400 Sobic007G185600--Sobic004G226900 Sobic007G185600--Sobic004G227100 Sobic001G049800 Sobic001G049800 Sobic007G185600--Sobic001G049800 Sobic006G271900 Sobic006G271900 Sobic007G185600--Sobic006G271900 Sobic003G425100 Sobic003G425100 Sobic007G185600--Sobic003G425100 Sobic001G040600 Sobic001G040600 Sobic007G185600--Sobic001G040600 Sobic004G227100--Sobic005G178700 Sobic008G056900 Sobic008G056900 Sobic004G227100--Sobic008G056900 Sobic004G227100--Sobic006G271900 Sobic004G227100--Sobic007G185600 Sobic004G227100--Sobic004G226900 Sobic010G015700 Sobic010G015700 Sobic004G227100--Sobic010G015700 Sobic004G077000 Sobic004G077000 Sobic004G227100--Sobic004G077000 Sobic002G399200 Sobic002G399200 Sobic004G227100--Sobic002G399200 Sobic004G227100--Sobic004G036700 Sobic005G178700--Sobic004G227100 Sobic005G178700--Sobic003G223500 Sobic007G143500 Sobic007G143500 Sobic005G178700--Sobic007G143500 Sobic004G235500 Sobic004G235500 Sobic005G178700--Sobic004G235500 Sobic005G178700--Sobic001G401400 Sobic006G067900 Sobic006G067900 Sobic005G178700--Sobic006G067900 Sobic007G030600 Sobic007G030600 Sobic005G178700--Sobic007G030600 Sobic001G370300 Sobic001G370300 Sobic005G178700--Sobic001G370300 Sobic005G178700--Sobic004G226900 Sobic001G453500 Sobic001G453500 Sobic006G111200--Sobic001G453500 Sobic004G151000 Sobic004G151000 Sobic006G111200--Sobic004G151000 Sobic001G368300 Sobic001G368300 Sobic006G111200--Sobic001G368300 Sobic006G111200--Sobic007G060600 Sobic006G111200--Sobic001G049800 Sobic006G111200--Sobic006G271900 Sobic002G380100 Sobic002G380100 Sobic006G111200--Sobic002G380100 Sobic006G059500 Sobic006G059500 Sobic006G111200--Sobic006G059500 Sobic007G059700 Sobic007G059700 Sobic006G111200--Sobic007G059700 Sobic001G408300 Sobic001G408300 Sobic001G061800--Sobic001G408300 Sobic001G061800--Sobic003G223500 Sobic005G088900 Sobic005G088900 Sobic001G061800--Sobic005G088900 Sobic001G024000 Sobic001G024000 Sobic001G061800--Sobic001G024000 Sobic005G028100 Sobic005G028100 Sobic001G061800--Sobic005G028100 Sobic004G047200 Sobic004G047200 Sobic001G061800--Sobic004G047200 Sobic008G009600 Sobic008G009600 Sobic001G061800--Sobic008G009600 Sobic006G251600 Sobic006G251600 Sobic001G061800--Sobic006G251600 Sobic004G287100 Sobic004G287100 Sobic001G061800--Sobic004G287100 Sobic009G145101 Sobic009G145101 Sobic003G189333--Sobic009G145101 Sobic009G251200 Sobic009G251200 Sobic003G189333--Sobic009G251200 Sobic003G189333--Sobic002G380100 Sobic005G028300 Sobic005G028300 Sobic003G189333--Sobic005G028300 Sobic006G226300 Sobic006G226300 Sobic003G189333--Sobic006G226300 Sobic005G059200 Sobic005G059200 Sobic003G189333--Sobic005G059200 Sobic001G081000 Sobic001G081000 Sobic003G189333--Sobic001G081000 Sobic006G185200 Sobic006G185200 Sobic003G189333--Sobic006G185200 Sobic004G119400 Sobic004G119400 Sobic003G189333--Sobic004G119400 Sobic001G401400--Sobic004G036700 Sobic006G198600 Sobic006G198600 Sobic001G401400--Sobic006G198600 Sobic001G401400--Sobic005G028100 Sobic003G322200 Sobic003G322200 Sobic001G401400--Sobic003G322200 Sobic003G407800 Sobic003G407800 Sobic001G401400--Sobic003G407800 Sobic001G372800 Sobic001G372800 Sobic001G401400--Sobic001G372800 Sobic006G225400 Sobic006G225400 Sobic001G401400--Sobic006G225400 Sobic001G422500 Sobic001G422500 Sobic001G401400--Sobic001G422500 Sobic003G407600 Sobic003G407600 Sobic001G401400--Sobic003G407600 Sobic003G223500--Sobic001G061800 Sobic003G223500--Sobic005G178700 Sobic004G011000 Sobic004G011000 Sobic003G223500--Sobic004G011000 Sobic001G226000 Sobic001G226000 Sobic003G223500--Sobic001G226000 Sobic001G168100 Sobic001G168100 Sobic003G223500--Sobic001G168100 Sobic002G334600 Sobic002G334600 Sobic003G223500--Sobic002G334600 Sobic007G043400 Sobic007G043400 Sobic003G223500--Sobic007G043400 Sobic007G053400 Sobic007G053400 Sobic003G223500--Sobic007G053400 Sobic002G218700 Sobic002G218700 Sobic003G223500--Sobic002G218700 Sobic001G391101 Sobic001G391101 Sobic001G081300--Sobic001G391101 Sobic007G179600 Sobic007G179600 Sobic001G081300--Sobic007G179600 Sobic001G347100 Sobic001G347100 Sobic001G081300--Sobic001G347100 Sobic009G238700 Sobic009G238700 Sobic001G081300--Sobic009G238700 Sobic003G051500 Sobic003G051500 Sobic001G081300--Sobic003G051500 Sobic003G419800 Sobic003G419800 Sobic001G081300--Sobic003G419800 Sobic001G081300--Sobic007G060600 Sobic001G081300--Sobic001G049800 Sobic010G099300 Sobic010G099300 Sobic001G081300--Sobic010G099300
Octagon: transcription factors


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