Gene annotation
Transcriptome id Sobic.007G185600.2
Synonym Sb07g025540
Functional annotation methyltransferase domain containing protein, expressed
UniProt A0A1Z5RAK7
Pfam PF13489
Panther DB PTHR12315
NCBI CDD KOG2899; Predicted methyltransferase
KEGG Orthology K15190; MEPCE, 7SK snRNA methylphosphate capping enzyme
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G51130 : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
RAP-DB (Rice) LOC_Os08g42760.1 : methyltransferase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a033618
Brachypodium -
Barley HORVU0Hr1G021200.11 , HORVU0Hr1G021200.10 , HORVU0Hr1G021200.9 , HORVU0Hr1G021200.8 , HORVU0Hr1G021200.1 , HORVU0Hr1G021200.3 , HORVU0Hr1G021200.2 , HORVU0Hr1G021200.5 , HORVU0Hr1G021200.4 , HORVU0Hr1G021200.7 , HORVU0Hr1G021200.6
Wheat TraesCS7D02G267900 , TraesCS7D02G267900 , TraesCS7A02G266800 , TraesCS7A02G266900 , TraesCS7B02G165600 , TraesCS7B02G165400 , TraesCS7D02G268000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
2 Sobic.004G036700 arginine N-methyltransferase 5, putative, expressed K02516: PRMT5, type II protein arginine methyltransferase
3 Sobic.001G401400 NUC189 domain containing protein, expressed K14546: UTP5, U3 small nucleolar RNA-associated protein 5
4 Sobic.004G226900 expressed protein -
5 Sobic.004G227100 survival motor neuron containing protein, expressed K13130: GEMIN2, gem associated protein 2
6 Sobic.001G049800 DDT domain containing protein, putative, expressed -
7 Sobic.006G271900 DNA mismatch repair protein MSH3, putative, expressed K08736: DNA mismatch repair protein MSH3
8 Sobic.003G425100 "Protein OSB3, chloroplastic/mitochondrial"(PubMedID : 24906815)@single-stranded DNA-binding protein, putative, expressed -
9 Sobic.001G040600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA topoisomerase 2, putative, expressed K02469: DNA gyrase subunit A
10 Sobic.002G262100 - K13181: DDX27, ATP-dependent RNA helicase DDX27
11 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
12 Sobic.010G083900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsPOP12 - Putative Prolyl Oligopeptidase homologue, expressed -
13 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
14 Sobic.001G081300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
15 Sobic.002G399200 - K14779: DDX52, ATP-dependent RNA helicase DDX52/ROK1
16 Sobic.001G422500 N-dimethylguanosine tRNA methyltransferase, putative, expressed K00555: TRMT1, tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase
17 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
18 Sobic.009G238700 EMB2744, putative, expressed -
19 Sobic.002G389200 pentatricopeptide repeat domain containing protein, putative, expressed -
20 Sobic.003G299200 pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic007G185600 Sobic007G185600 Sobic007G060600 Sobic007G060600 Sobic007G185600--Sobic007G060600 Sobic004G036700 Sobic004G036700 Sobic007G185600--Sobic004G036700 Sobic001G401400 Sobic001G401400 Sobic007G185600--Sobic001G401400 Sobic004G226900 Sobic004G226900 Sobic007G185600--Sobic004G226900 Sobic004G227100 Sobic004G227100 Sobic007G185600--Sobic004G227100 Sobic001G049800 Sobic001G049800 Sobic007G185600--Sobic001G049800 Sobic006G271900 Sobic006G271900 Sobic007G185600--Sobic006G271900 Sobic003G425100 Sobic003G425100 Sobic007G185600--Sobic003G425100 Sobic001G040600 Sobic001G040600 Sobic007G185600--Sobic001G040600 Sobic007G060600--Sobic001G049800 Sobic007G060600--Sobic001G040600 Sobic007G059700 Sobic007G059700 Sobic007G060600--Sobic007G059700 Sobic004G151000 Sobic004G151000 Sobic007G060600--Sobic004G151000 Sobic004G027300 Sobic004G027300 Sobic007G060600--Sobic004G027300 Sobic006G273900 Sobic006G273900 Sobic007G060600--Sobic006G273900 Sobic009G238700 Sobic009G238700 Sobic007G060600--Sobic009G238700 Sobic006G111200 Sobic006G111200 Sobic007G060600--Sobic006G111200 Sobic009G191500 Sobic009G191500 Sobic007G060600--Sobic009G191500 Sobic005G028100 Sobic005G028100 Sobic004G036700--Sobic005G028100 Sobic004G036700--Sobic001G401400 Sobic001G422500 Sobic001G422500 Sobic004G036700--Sobic001G422500 Sobic006G225400 Sobic006G225400 Sobic004G036700--Sobic006G225400 Sobic008G163500 Sobic008G163500 Sobic004G036700--Sobic008G163500 Sobic003G123200 Sobic003G123200 Sobic004G036700--Sobic003G123200 Sobic004G036700--Sobic003G425100 Sobic006G198600 Sobic006G198600 Sobic004G036700--Sobic006G198600 Sobic010G205900 Sobic010G205900 Sobic004G036700--Sobic010G205900 Sobic001G401400--Sobic004G036700 Sobic001G401400--Sobic006G198600 Sobic001G401400--Sobic005G028100 Sobic003G322200 Sobic003G322200 Sobic001G401400--Sobic003G322200 Sobic003G407800 Sobic003G407800 Sobic001G401400--Sobic003G407800 Sobic001G372800 Sobic001G372800 Sobic001G401400--Sobic001G372800 Sobic001G401400--Sobic006G225400 Sobic001G401400--Sobic001G422500 Sobic003G407600 Sobic003G407600 Sobic001G401400--Sobic003G407600 Sobic004G226900--Sobic007G185600 Sobic004G226900--Sobic004G227100 Sobic005G178700 Sobic005G178700 Sobic004G226900--Sobic005G178700 Sobic004G226900--Sobic006G111200 Sobic001G061800 Sobic001G061800 Sobic004G226900--Sobic001G061800 Sobic003G189333 Sobic003G189333 Sobic004G226900--Sobic003G189333 Sobic004G226900--Sobic001G401400 Sobic003G223500 Sobic003G223500 Sobic004G226900--Sobic003G223500 Sobic001G081300 Sobic001G081300 Sobic004G226900--Sobic001G081300 Sobic004G227100--Sobic005G178700 Sobic008G056900 Sobic008G056900 Sobic004G227100--Sobic008G056900 Sobic004G227100--Sobic006G271900 Sobic004G227100--Sobic007G185600 Sobic004G227100--Sobic004G226900 Sobic010G015700 Sobic010G015700 Sobic004G227100--Sobic010G015700 Sobic004G077000 Sobic004G077000 Sobic004G227100--Sobic004G077000 Sobic002G399200 Sobic002G399200 Sobic004G227100--Sobic002G399200 Sobic004G227100--Sobic004G036700 Sobic001G049800--Sobic007G060600 Sobic001G049800--Sobic004G151000 Sobic001G049800--Sobic004G027300 Sobic001G544300 Sobic001G544300 Sobic001G049800--Sobic001G544300 Sobic010G224700 Sobic010G224700 Sobic001G049800--Sobic010G224700 Sobic001G049800--Sobic006G111200 Sobic006G059500 Sobic006G059500 Sobic001G049800--Sobic006G059500 Sobic002G378100 Sobic002G378100 Sobic001G049800--Sobic002G378100 Sobic010G083900 Sobic010G083900 Sobic001G049800--Sobic010G083900 Sobic006G271900--Sobic001G040600 Sobic006G271900--Sobic007G060600 Sobic009G253200 Sobic009G253200 Sobic006G271900--Sobic009G253200 Sobic006G271900--Sobic001G049800 Sobic006G271900--Sobic006G111200 Sobic002G251800 Sobic002G251800 Sobic006G271900--Sobic002G251800 Sobic001G480400 Sobic001G480400 Sobic006G271900--Sobic001G480400 Sobic005G028300 Sobic005G028300 Sobic006G271900--Sobic005G028300 Sobic006G271900--Sobic001G081300 Sobic009G163600 Sobic009G163600 Sobic003G425100--Sobic009G163600 Sobic003G425100--Sobic005G028100 Sobic003G425100--Sobic004G027300 Sobic003G425100--Sobic006G225400 Sobic003G425100--Sobic010G224700 Sobic009G071700 Sobic009G071700 Sobic003G425100--Sobic009G071700 Sobic003G436600 Sobic003G436600 Sobic003G425100--Sobic003G436600 Sobic003G425100--Sobic006G198600 Sobic003G425100--Sobic004G036700 Sobic001G040600--Sobic007G060600 Sobic001G040600--Sobic006G271900 Sobic010G099300 Sobic010G099300 Sobic001G040600--Sobic010G099300 Sobic003G336500 Sobic003G336500 Sobic001G040600--Sobic003G336500 Sobic001G040600--Sobic001G049800 Sobic003G051500 Sobic003G051500 Sobic001G040600--Sobic003G051500 Sobic008G100400 Sobic008G100400 Sobic001G040600--Sobic008G100400 Sobic001G040600--Sobic001G081300 Sobic001G040600--Sobic002G251800
Octagon: transcription factors


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