Gene annotation
Transcriptome id Sobic.004G025100.1
Synonym Sb04g002230
Functional annotation pentatricopeptide repeat-containing protein, putative, expressed
UniProt C5XT71
Pfam PF13041
Panther DB PTHR24015 PTHR24015:SF839
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G18485 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os02g03420.1 : pentatricopeptide repeat-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a018806
Brachypodium KQJ93075
Barley HORVU6Hr1G014780.6 , HORVU6Hr1G014780.7 , HORVU6Hr1G014780.12
Wheat TraesCS6A02G089300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G069100 pentatricopeptide, putative, expressed -
2 Sobic.010G256000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
3 Sobic.009G155400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
4 Sobic.002G183300 GTP binding protein, putative, expressed -
5 Sobic.002G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
6 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
7 Sobic.005G210700 pentatricopeptide repeat domain containing protein, putative, expressed -
8 Sobic.009G116400 pentatricopeptide, putative, expressed -
9 Sobic.006G085900 pentatricopeptide, putative, expressed -
10 Sobic.001G347100 tetratricopeptide-like helical, putative, expressed -
11 Sobic.005G059400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized PPR-repeat protein, putative, expressed -
12 Sobic.008G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
13 Sobic.009G134400 pentatricopeptide repeat protein PPR986-12, putative, expressed -
14 Sobic.004G217900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -
15 Sobic.008G066900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
16 Sobic.001G122200 zinc finger protein, putative, expressed K11426: [histone H3]-lysine4/36 N-trimethyltransferase SMYD
17 Sobic.002G389200 pentatricopeptide repeat domain containing protein, putative, expressed -
18 Sobic.002G218700 mitochondrial carrier protein, putative, expressed K15121: solute carrier family 25, member 44
19 Sobic.001G334100 1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed K01814: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
20 Sobic.005G011000 Rf1, mitochondrial precursor, putative, expressed -


Gene co-expression network
sample Sobic004G025100 Sobic004G025100 Sobic006G069100 Sobic006G069100 Sobic004G025100--Sobic006G069100 Sobic010G256000 Sobic010G256000 Sobic004G025100--Sobic010G256000 Sobic009G155400 Sobic009G155400 Sobic004G025100--Sobic009G155400 Sobic002G183300 Sobic002G183300 Sobic004G025100--Sobic002G183300 Sobic002G084400 Sobic002G084400 Sobic004G025100--Sobic002G084400 Sobic005G028300 Sobic005G028300 Sobic004G025100--Sobic005G028300 Sobic005G210700 Sobic005G210700 Sobic004G025100--Sobic005G210700 Sobic009G116400 Sobic009G116400 Sobic004G025100--Sobic009G116400 Sobic006G085900 Sobic006G085900 Sobic004G025100--Sobic006G085900 Sobic004G241000 Sobic004G241000 Sobic006G069100--Sobic004G241000 Sobic004G256900 Sobic004G256900 Sobic006G069100--Sobic004G256900 Sobic010G068900 Sobic010G068900 Sobic006G069100--Sobic010G068900 Sobic010G190900 Sobic010G190900 Sobic006G069100--Sobic010G190900 Sobic006G069100--Sobic006G085900 Sobic006G069100--Sobic009G155400 Sobic008G163400 Sobic008G163400 Sobic006G069100--Sobic008G163400 Sobic006G069100--Sobic009G116400 Sobic006G069100--Sobic004G025100 Sobic010G256000--Sobic004G025100 Sobic010G256000--Sobic006G069100 Sobic002G218700 Sobic002G218700 Sobic010G256000--Sobic002G218700 Sobic001G122200 Sobic001G122200 Sobic010G256000--Sobic001G122200 Sobic008G066900 Sobic008G066900 Sobic010G256000--Sobic008G066900 Sobic010G256000--Sobic009G155400 Sobic002G389200 Sobic002G389200 Sobic010G256000--Sobic002G389200 Sobic005G168300 Sobic005G168300 Sobic010G256000--Sobic005G168300 Sobic010G256000--Sobic002G183300 Sobic009G155400--Sobic009G116400 Sobic009G155400--Sobic008G163400 Sobic009G155400--Sobic004G241000 Sobic009G155400--Sobic006G085900 Sobic004G217900 Sobic004G217900 Sobic009G155400--Sobic004G217900 Sobic009G155400--Sobic006G069100 Sobic002G172500 Sobic002G172500 Sobic009G155400--Sobic002G172500 Sobic006G262700 Sobic006G262700 Sobic009G155400--Sobic006G262700 Sobic009G155400--Sobic005G210700 Sobic002G183300--Sobic004G025100 Sobic001G401400 Sobic001G401400 Sobic002G183300--Sobic001G401400 Sobic005G059400 Sobic005G059400 Sobic002G183300--Sobic005G059400 Sobic001G105600 Sobic001G105600 Sobic002G183300--Sobic001G105600 Sobic009G253400 Sobic009G253400 Sobic002G183300--Sobic009G253400 Sobic001G334100 Sobic001G334100 Sobic002G183300--Sobic001G334100 Sobic002G183300--Sobic001G122200 Sobic001G204700 Sobic001G204700 Sobic002G183300--Sobic001G204700 Sobic008G000600 Sobic008G000600 Sobic002G183300--Sobic008G000600 Sobic010G232700 Sobic010G232700 Sobic002G084400--Sobic010G232700 Sobic008G041000 Sobic008G041000 Sobic002G084400--Sobic008G041000 Sobic002G084400--Sobic006G085900 Sobic002G251800 Sobic002G251800 Sobic002G084400--Sobic002G251800 Sobic002G084400--Sobic005G028300 Sobic002G084400--Sobic006G069100 Sobic008G031200 Sobic008G031200 Sobic002G084400--Sobic008G031200 Sobic008G171500 Sobic008G171500 Sobic002G084400--Sobic008G171500 Sobic003G067201 Sobic003G067201 Sobic002G084400--Sobic003G067201 Sobic005G028300--Sobic002G389200 Sobic003G051500 Sobic003G051500 Sobic005G028300--Sobic003G051500 Sobic005G028300--Sobic002G251800 Sobic001G001200 Sobic001G001200 Sobic005G028300--Sobic001G001200 Sobic003G419800 Sobic003G419800 Sobic005G028300--Sobic003G419800 Sobic003G014700 Sobic003G014700 Sobic005G028300--Sobic003G014700 Sobic001G391101 Sobic001G391101 Sobic005G028300--Sobic001G391101 Sobic005G028300--Sobic002G084400 Sobic010G083900 Sobic010G083900 Sobic005G028300--Sobic010G083900 Sobic008G099900 Sobic008G099900 Sobic005G210700--Sobic008G099900 Sobic005G210700--Sobic009G155400 Sobic005G210700--Sobic009G116400 Sobic005G210700--Sobic006G085900 Sobic007G179600 Sobic007G179600 Sobic005G210700--Sobic007G179600 Sobic001G347100 Sobic001G347100 Sobic005G210700--Sobic001G347100 Sobic005G210700--Sobic008G066900 Sobic005G210700--Sobic006G069100 Sobic005G011000 Sobic005G011000 Sobic005G210700--Sobic005G011000 Sobic009G116400--Sobic009G155400 Sobic009G116400--Sobic006G262700 Sobic009G116400--Sobic008G163400 Sobic009G116400--Sobic010G190900 Sobic007G087900 Sobic007G087900 Sobic009G116400--Sobic007G087900 Sobic009G116400--Sobic006G069100 Sobic009G116400--Sobic005G210700 Sobic004G346200 Sobic004G346200 Sobic009G116400--Sobic004G346200 Sobic009G116400--Sobic004G241000 Sobic006G085900--Sobic004G241000 Sobic006G085900--Sobic010G068900 Sobic006G085900--Sobic009G155400 Sobic006G085900--Sobic006G069100 Sobic006G085900--Sobic002G172500 Sobic006G085900--Sobic008G099900 Sobic006G085900--Sobic002G084400 Sobic001G436600 Sobic001G436600 Sobic006G085900--Sobic001G436600 Sobic006G085900--Sobic005G210700
Octagon: transcription factors


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