Gene annotation
Transcriptome id Sobic.003G203100.1
Synonym Sb03g026520
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt C5XPI6
Pfam PF14432 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF377
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G09950 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os01g40720.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a055797 , Zm00025a028543
Brachypodium KQK15114 , PNT72285 , KQK08519
Barley HORVU2Hr1G029200.3 , HORVU2Hr1G029200.2 , HORVU2Hr1G029200.1 , HORVU2Hr1G029200.7 , HORVU2Hr1G029200.6 , HORVU2Hr1G029200.5 , HORVU2Hr1G029200.4 , HORVU3Hr1G051320.4 , HORVU3Hr1G051320.5 , HORVU3Hr1G051320.2 , HORVU3Hr1G051320.3 , HORVU3Hr1G051320.1
Wheat TraesCS3D02G214700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G232700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
2 Sobic.008G041000 expressed protein -
3 Sobic.006G085900 pentatricopeptide, putative, expressed -
4 Sobic.002G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
5 Sobic.008G009300 pentatricopeptide, putative, expressed -
6 Sobic.002G389200 pentatricopeptide repeat domain containing protein, putative, expressed -
7 Sobic.001G490700 pentatricopeptide, putative, expressed -
8 Sobic.002G167400 pentatricopeptide, putative, expressed -
9 Sobic.005G210700 pentatricopeptide repeat domain containing protein, putative, expressed -
10 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
11 Sobic.001G200600 PPR repeat domain containing protein, putative, expressed -
12 Sobic.007G179600 pentatricopeptide, putative, expressed -
13 Sobic.001G412200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
14 Sobic.002G251800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
15 Sobic.010G066900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
16 Sobic.004G250100 pentatricopeptide, putative, expressed -
17 Sobic.002G111700 tetratricopeptide-like helical, putative, expressed -
18 Sobic.001G527600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@radical SAM enzyme, putative, expressed K02495: hemN, oxygen-independent coproporphyrinogen III oxidase
19 Sobic.004G255300 pentatricopeptide, putative, expressed -
20 Sobic.001G212200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@LOI1, putative, expressed -


Gene co-expression network
sample Sobic003G203100 Sobic003G203100 Sobic010G232700 Sobic010G232700 Sobic003G203100--Sobic010G232700 Sobic008G041000 Sobic008G041000 Sobic003G203100--Sobic008G041000 Sobic006G085900 Sobic006G085900 Sobic003G203100--Sobic006G085900 Sobic002G084400 Sobic002G084400 Sobic003G203100--Sobic002G084400 Sobic008G009300 Sobic008G009300 Sobic003G203100--Sobic008G009300 Sobic002G389200 Sobic002G389200 Sobic003G203100--Sobic002G389200 Sobic001G490700 Sobic001G490700 Sobic003G203100--Sobic001G490700 Sobic002G167400 Sobic002G167400 Sobic003G203100--Sobic002G167400 Sobic005G210700 Sobic005G210700 Sobic003G203100--Sobic005G210700 Sobic010G232700--Sobic002G084400 Sobic010G232700--Sobic008G041000 Sobic010G232700--Sobic006G085900 Sobic008G171500 Sobic008G171500 Sobic010G232700--Sobic008G171500 Sobic010G232700--Sobic003G203100 Sobic004G241000 Sobic004G241000 Sobic010G232700--Sobic004G241000 Sobic006G069100 Sobic006G069100 Sobic010G232700--Sobic006G069100 Sobic005G028300 Sobic005G028300 Sobic010G232700--Sobic005G028300 Sobic004G256900 Sobic004G256900 Sobic010G232700--Sobic004G256900 Sobic008G041000--Sobic002G084400 Sobic008G041000--Sobic010G232700 Sobic008G041000--Sobic006G085900 Sobic008G041000--Sobic003G203100 Sobic008G041000--Sobic005G028300 Sobic002G251800 Sobic002G251800 Sobic008G041000--Sobic002G251800 Sobic008G041000--Sobic002G389200 Sobic009G134400 Sobic009G134400 Sobic008G041000--Sobic009G134400 Sobic008G041000--Sobic006G069100 Sobic006G085900--Sobic004G241000 Sobic010G068900 Sobic010G068900 Sobic006G085900--Sobic010G068900 Sobic009G155400 Sobic009G155400 Sobic006G085900--Sobic009G155400 Sobic006G085900--Sobic006G069100 Sobic002G172500 Sobic002G172500 Sobic006G085900--Sobic002G172500 Sobic008G099900 Sobic008G099900 Sobic006G085900--Sobic008G099900 Sobic006G085900--Sobic002G084400 Sobic001G436600 Sobic001G436600 Sobic006G085900--Sobic001G436600 Sobic006G085900--Sobic005G210700 Sobic002G084400--Sobic010G232700 Sobic002G084400--Sobic008G041000 Sobic002G084400--Sobic006G085900 Sobic002G084400--Sobic002G251800 Sobic002G084400--Sobic005G028300 Sobic002G084400--Sobic006G069100 Sobic008G031200 Sobic008G031200 Sobic002G084400--Sobic008G031200 Sobic002G084400--Sobic008G171500 Sobic003G067201 Sobic003G067201 Sobic002G084400--Sobic003G067201 Sobic008G009300--Sobic003G203100 Sobic008G009300--Sobic002G389200 Sobic008G009300--Sobic010G232700 Sobic010G067000 Sobic010G067000 Sobic008G009300--Sobic010G067000 Sobic007G179600 Sobic007G179600 Sobic008G009300--Sobic007G179600 Sobic008G149200 Sobic008G149200 Sobic008G009300--Sobic008G149200 Sobic010G161900 Sobic010G161900 Sobic008G009300--Sobic010G161900 Sobic008G009300--Sobic002G084400 Sobic003G299200 Sobic003G299200 Sobic008G009300--Sobic003G299200 Sobic002G389200--Sobic005G028300 Sobic002G389200--Sobic009G155400 Sobic002G240900 Sobic002G240900 Sobic002G389200--Sobic002G240900 Sobic002G389200--Sobic006G069100 Sobic002G389200--Sobic006G085900 Sobic003G419800 Sobic003G419800 Sobic002G389200--Sobic003G419800 Sobic002G389200--Sobic002G251800 Sobic005G011000 Sobic005G011000 Sobic002G389200--Sobic005G011000 Sobic002G389200--Sobic007G179600 Sobic008G178200 Sobic008G178200 Sobic001G490700--Sobic008G178200 Sobic008G178300 Sobic008G178300 Sobic001G490700--Sobic008G178300 Sobic004G250100 Sobic004G250100 Sobic001G490700--Sobic004G250100 Sobic007G179500 Sobic007G179500 Sobic001G490700--Sobic007G179500 Sobic003G433600 Sobic003G433600 Sobic001G490700--Sobic003G433600 Sobic001G490700--Sobic003G203100 Sobic006G197500 Sobic006G197500 Sobic001G490700--Sobic006G197500 Sobic005G108300 Sobic005G108300 Sobic001G490700--Sobic005G108300 Sobic004G033300 Sobic004G033300 Sobic001G490700--Sobic004G033300 Sobic001G212200 Sobic001G212200 Sobic002G167400--Sobic001G212200 Sobic002G167400--Sobic003G203100 Sobic003G051500 Sobic003G051500 Sobic002G167400--Sobic003G051500 Sobic004G217900 Sobic004G217900 Sobic002G167400--Sobic004G217900 Sobic002G167400--Sobic005G028300 Sobic001G001200 Sobic001G001200 Sobic002G167400--Sobic001G001200 Sobic009G136200 Sobic009G136200 Sobic002G167400--Sobic009G136200 Sobic002G042900 Sobic002G042900 Sobic002G167400--Sobic002G042900 Sobic001G391101 Sobic001G391101 Sobic002G167400--Sobic001G391101 Sobic005G210700--Sobic008G099900 Sobic005G210700--Sobic009G155400 Sobic009G116400 Sobic009G116400 Sobic005G210700--Sobic009G116400 Sobic005G210700--Sobic006G085900 Sobic005G210700--Sobic007G179600 Sobic001G347100 Sobic001G347100 Sobic005G210700--Sobic001G347100 Sobic008G066900 Sobic008G066900 Sobic005G210700--Sobic008G066900 Sobic005G210700--Sobic006G069100 Sobic005G210700--Sobic005G011000
Octagon: transcription factors


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