Gene annotation
Transcriptome id Sobic.008G009300.1
Synonym Sb08g000870
Functional annotation pentatricopeptide, putative, expressed
UniProt C5YQ62
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF715
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G13650 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os11g01860.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a053669
Brachypodium PNT65579
Barley HORVU5Hr1G047110.1 , HORVU5Hr1G047110.2 , HORVU5Hr1G047110.3 , HORVU5Hr1G047110.4
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G203100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
2 Sobic.002G389200 pentatricopeptide repeat domain containing protein, putative, expressed -
3 Sobic.010G232700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
4 Sobic.010G067000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
5 Sobic.007G179600 pentatricopeptide, putative, expressed -
6 Sobic.008G149200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@vegetative storage protein, putative, expressed -
7 Sobic.010G161900 peroxidase precursor, putative, expressed K00430: peroxidase
8 Sobic.002G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
9 Sobic.003G299200 pentatricopeptide, putative, expressed -
10 Sobic.001G347100 tetratricopeptide-like helical, putative, expressed -
11 Sobic.001G149100 vegetative storage protein, putative, expressed -
12 Sobic.001G151300 pentatricopeptide, putative, expressed -
13 Sobic.006G069100 pentatricopeptide, putative, expressed -
14 Sobic.005G210700 pentatricopeptide repeat domain containing protein, putative, expressed -
15 Sobic.008G066900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
16 Sobic.006G085900 pentatricopeptide, putative, expressed -
17 Sobic.004G241000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
18 Sobic.001G412200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
19 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
20 Sobic.007G123100 PPR repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic008G009300 Sobic008G009300 Sobic003G203100 Sobic003G203100 Sobic008G009300--Sobic003G203100 Sobic002G389200 Sobic002G389200 Sobic008G009300--Sobic002G389200 Sobic010G232700 Sobic010G232700 Sobic008G009300--Sobic010G232700 Sobic010G067000 Sobic010G067000 Sobic008G009300--Sobic010G067000 Sobic007G179600 Sobic007G179600 Sobic008G009300--Sobic007G179600 Sobic008G149200 Sobic008G149200 Sobic008G009300--Sobic008G149200 Sobic010G161900 Sobic010G161900 Sobic008G009300--Sobic010G161900 Sobic002G084400 Sobic002G084400 Sobic008G009300--Sobic002G084400 Sobic003G299200 Sobic003G299200 Sobic008G009300--Sobic003G299200 Sobic003G203100--Sobic010G232700 Sobic008G041000 Sobic008G041000 Sobic003G203100--Sobic008G041000 Sobic006G085900 Sobic006G085900 Sobic003G203100--Sobic006G085900 Sobic003G203100--Sobic002G084400 Sobic003G203100--Sobic008G009300 Sobic003G203100--Sobic002G389200 Sobic001G490700 Sobic001G490700 Sobic003G203100--Sobic001G490700 Sobic002G167400 Sobic002G167400 Sobic003G203100--Sobic002G167400 Sobic005G210700 Sobic005G210700 Sobic003G203100--Sobic005G210700 Sobic005G028300 Sobic005G028300 Sobic002G389200--Sobic005G028300 Sobic009G155400 Sobic009G155400 Sobic002G389200--Sobic009G155400 Sobic002G240900 Sobic002G240900 Sobic002G389200--Sobic002G240900 Sobic006G069100 Sobic006G069100 Sobic002G389200--Sobic006G069100 Sobic002G389200--Sobic006G085900 Sobic003G419800 Sobic003G419800 Sobic002G389200--Sobic003G419800 Sobic002G251800 Sobic002G251800 Sobic002G389200--Sobic002G251800 Sobic005G011000 Sobic005G011000 Sobic002G389200--Sobic005G011000 Sobic002G389200--Sobic007G179600 Sobic010G232700--Sobic002G084400 Sobic010G232700--Sobic008G041000 Sobic010G232700--Sobic006G085900 Sobic008G171500 Sobic008G171500 Sobic010G232700--Sobic008G171500 Sobic010G232700--Sobic003G203100 Sobic004G241000 Sobic004G241000 Sobic010G232700--Sobic004G241000 Sobic010G232700--Sobic006G069100 Sobic010G232700--Sobic005G028300 Sobic004G256900 Sobic004G256900 Sobic010G232700--Sobic004G256900 Sobic001G200600 Sobic001G200600 Sobic010G067000--Sobic001G200600 Sobic003G433600 Sobic003G433600 Sobic010G067000--Sobic003G433600 Sobic010G067000--Sobic008G009300 Sobic007G179500 Sobic007G179500 Sobic010G067000--Sobic007G179500 Sobic004G250100 Sobic004G250100 Sobic010G067000--Sobic004G250100 Sobic009G042500 Sobic009G042500 Sobic010G067000--Sobic009G042500 Sobic002G111700 Sobic002G111700 Sobic010G067000--Sobic002G111700 Sobic010G067000--Sobic003G203100 Sobic009G226000 Sobic009G226000 Sobic010G067000--Sobic009G226000 Sobic001G081300 Sobic001G081300 Sobic007G179600--Sobic001G081300 Sobic001G347100 Sobic001G347100 Sobic007G179600--Sobic001G347100 Sobic007G179600--Sobic003G419800 Sobic001G391101 Sobic001G391101 Sobic007G179600--Sobic001G391101 Sobic007G179600--Sobic005G210700 Sobic009G238700 Sobic009G238700 Sobic007G179600--Sobic009G238700 Sobic008G066900 Sobic008G066900 Sobic007G179600--Sobic008G066900 Sobic008G099900 Sobic008G099900 Sobic007G179600--Sobic008G099900 Sobic007G210801 Sobic007G210801 Sobic007G179600--Sobic007G210801 Sobic008G149200--Sobic002G084400 Sobic008G149200--Sobic010G232700 Sobic008G149200--Sobic001G347100 Sobic008G165200 Sobic008G165200 Sobic008G149200--Sobic008G165200 Sobic008G163400 Sobic008G163400 Sobic008G149200--Sobic008G163400 Sobic008G149200--Sobic008G041000 Sobic009G063500 Sobic009G063500 Sobic008G149200--Sobic009G063500 Sobic008G149200--Sobic006G085900 Sobic001G149100 Sobic001G149100 Sobic008G149200--Sobic001G149100 Sobic002G023400 Sobic002G023400 Sobic010G161900--Sobic002G023400 Sobic005G123900 Sobic005G123900 Sobic010G161900--Sobic005G123900 Sobic004G325300 Sobic004G325300 Sobic010G161900--Sobic004G325300 Sobic008G167100 Sobic008G167100 Sobic010G161900--Sobic008G167100 Sobic005G054700 Sobic005G054700 Sobic010G161900--Sobic005G054700 Sobic004G247300 Sobic004G247300 Sobic010G161900--Sobic004G247300 Sobic003G103000 Sobic003G103000 Sobic010G161900--Sobic003G103000 Sobic003G320500 Sobic003G320500 Sobic010G161900--Sobic003G320500 Sobic007G187400 Sobic007G187400 Sobic010G161900--Sobic007G187400 Sobic002G084400--Sobic010G232700 Sobic002G084400--Sobic008G041000 Sobic002G084400--Sobic006G085900 Sobic002G084400--Sobic002G251800 Sobic002G084400--Sobic005G028300 Sobic002G084400--Sobic006G069100 Sobic008G031200 Sobic008G031200 Sobic002G084400--Sobic008G031200 Sobic002G084400--Sobic008G171500 Sobic003G067201 Sobic003G067201 Sobic002G084400--Sobic003G067201 Sobic003G299200--Sobic001G149100 Sobic003G299200--Sobic001G347100 Sobic003G299200--Sobic001G081300 Sobic001G401400 Sobic001G401400 Sobic003G299200--Sobic001G401400 Sobic003G299200--Sobic009G238700 Sobic003G299200--Sobic008G163400 Sobic002G267600 Sobic002G267600 Sobic003G299200--Sobic002G267600 Sobic003G051500 Sobic003G051500 Sobic003G299200--Sobic003G051500 Sobic001G040600 Sobic001G040600 Sobic003G299200--Sobic001G040600
Octagon: transcription factors


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