Gene annotation
Transcriptome id Sobic.001G412200.1
Synonym Sb01g038860
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt C5WP82
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF38
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G37310 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os03g17510.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a001916
Brachypodium KQK22236
Barley HORVU4Hr1G057730.1 , HORVU4Hr1G057730.2 , HORVU4Hr1G057730.3 , HORVU4Hr1G057730.4 , HORVU4Hr1G057730.5
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G051500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
2 Sobic.007G179600 pentatricopeptide, putative, expressed -
3 Sobic.001G081300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
4 Sobic.003G419800 pentatricopeptide repeat protein PPR1106-17, putative, expressed -
5 Sobic.009G136200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
6 Sobic.004G128666 - -
7 Sobic.001G001200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
8 Sobic.010G232700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
9 Sobic.003G262650 - -
10 Sobic.001G390900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed K00036: G6PD, glucose-6-phosphate 1-dehydrogenase
11 Sobic.007G182600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
12 Sobic.002G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
13 Sobic.003G203100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
14 Sobic.004G250100 pentatricopeptide, putative, expressed -
15 Sobic.002G385200 pentatricopeptide, putative, expressed -
16 Sobic.009G238700 EMB2744, putative, expressed -
17 Sobic.001G347100 tetratricopeptide-like helical, putative, expressed -
18 Sobic.001G391101 - -
19 Sobic.006G085900 pentatricopeptide, putative, expressed -
20 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -


Gene co-expression network
sample Sobic001G412200 Sobic001G412200 Sobic003G051500 Sobic003G051500 Sobic001G412200--Sobic003G051500 Sobic007G179600 Sobic007G179600 Sobic001G412200--Sobic007G179600 Sobic001G081300 Sobic001G081300 Sobic001G412200--Sobic001G081300 Sobic003G419800 Sobic003G419800 Sobic001G412200--Sobic003G419800 Sobic009G136200 Sobic009G136200 Sobic001G412200--Sobic009G136200 Sobic004G128666 Sobic004G128666 Sobic001G412200--Sobic004G128666 Sobic001G001200 Sobic001G001200 Sobic001G412200--Sobic001G001200 Sobic010G232700 Sobic010G232700 Sobic001G412200--Sobic010G232700 Sobic003G262650 Sobic003G262650 Sobic001G412200--Sobic003G262650 Sobic001G391101 Sobic001G391101 Sobic003G051500--Sobic001G391101 Sobic003G051500--Sobic001G001200 Sobic005G028300 Sobic005G028300 Sobic003G051500--Sobic005G028300 Sobic001G040600 Sobic001G040600 Sobic003G051500--Sobic001G040600 Sobic003G051500--Sobic001G081300 Sobic003G051500--Sobic003G419800 Sobic007G182600 Sobic007G182600 Sobic003G051500--Sobic007G182600 Sobic010G099300 Sobic010G099300 Sobic003G051500--Sobic010G099300 Sobic004G217900 Sobic004G217900 Sobic003G051500--Sobic004G217900 Sobic007G179600--Sobic001G081300 Sobic001G347100 Sobic001G347100 Sobic007G179600--Sobic001G347100 Sobic007G179600--Sobic003G419800 Sobic007G179600--Sobic001G391101 Sobic005G210700 Sobic005G210700 Sobic007G179600--Sobic005G210700 Sobic009G238700 Sobic009G238700 Sobic007G179600--Sobic009G238700 Sobic008G066900 Sobic008G066900 Sobic007G179600--Sobic008G066900 Sobic008G099900 Sobic008G099900 Sobic007G179600--Sobic008G099900 Sobic007G210801 Sobic007G210801 Sobic007G179600--Sobic007G210801 Sobic001G081300--Sobic001G391101 Sobic001G081300--Sobic007G179600 Sobic001G081300--Sobic001G347100 Sobic001G081300--Sobic009G238700 Sobic001G081300--Sobic003G051500 Sobic001G081300--Sobic003G419800 Sobic007G060600 Sobic007G060600 Sobic001G081300--Sobic007G060600 Sobic001G049800 Sobic001G049800 Sobic001G081300--Sobic001G049800 Sobic001G081300--Sobic010G099300 Sobic003G419800--Sobic005G028300 Sobic003G419800--Sobic001G001200 Sobic003G419800--Sobic007G179600 Sobic003G419800--Sobic001G081300 Sobic003G419800--Sobic003G051500 Sobic003G419800--Sobic001G391101 Sobic001G390900 Sobic001G390900 Sobic003G419800--Sobic001G390900 Sobic003G014700 Sobic003G014700 Sobic003G419800--Sobic003G014700 Sobic003G419800--Sobic007G182600 Sobic009G136200--Sobic007G179600 Sobic009G136200--Sobic001G412200 Sobic002G042900 Sobic002G042900 Sobic009G136200--Sobic002G042900 Sobic009G136200--Sobic001G001200 Sobic002G385200 Sobic002G385200 Sobic009G136200--Sobic002G385200 Sobic009G136200--Sobic003G051500 Sobic004G250100 Sobic004G250100 Sobic009G136200--Sobic004G250100 Sobic002G167400 Sobic002G167400 Sobic009G136200--Sobic002G167400 Sobic003G203100 Sobic003G203100 Sobic009G136200--Sobic003G203100 Sobic004G128666--Sobic001G412200 Sobic004G176500 Sobic004G176500 Sobic004G128666--Sobic004G176500 Sobic008G031200 Sobic008G031200 Sobic004G128666--Sobic008G031200 Sobic002G084400 Sobic002G084400 Sobic004G128666--Sobic002G084400 Sobic004G128666--Sobic009G238700 Sobic002G162000 Sobic002G162000 Sobic004G128666--Sobic002G162000 Sobic004G128666--Sobic010G232700 Sobic006G085900 Sobic006G085900 Sobic004G128666--Sobic006G085900 Sobic004G128666--Sobic003G051500 Sobic001G001200--Sobic003G051500 Sobic001G001200--Sobic005G028300 Sobic001G001200--Sobic003G419800 Sobic001G001200--Sobic001G391101 Sobic001G001200--Sobic001G390900 Sobic003G183900 Sobic003G183900 Sobic001G001200--Sobic003G183900 Sobic001G001200--Sobic001G081300 Sobic001G001200--Sobic007G179600 Sobic010G083900 Sobic010G083900 Sobic001G001200--Sobic010G083900 Sobic010G232700--Sobic002G084400 Sobic008G041000 Sobic008G041000 Sobic010G232700--Sobic008G041000 Sobic010G232700--Sobic006G085900 Sobic008G171500 Sobic008G171500 Sobic010G232700--Sobic008G171500 Sobic010G232700--Sobic003G203100 Sobic004G241000 Sobic004G241000 Sobic010G232700--Sobic004G241000 Sobic006G069100 Sobic006G069100 Sobic010G232700--Sobic006G069100 Sobic010G232700--Sobic005G028300 Sobic004G256900 Sobic004G256900 Sobic010G232700--Sobic004G256900 Sobic002G201100 Sobic002G201100 Sobic003G262650--Sobic002G201100 Sobic009G161100 Sobic009G161100 Sobic003G262650--Sobic009G161100 Sobic007G060900 Sobic007G060900 Sobic003G262650--Sobic007G060900 Sobic009G196200 Sobic009G196200 Sobic003G262650--Sobic009G196200 Sobic004G006100 Sobic004G006100 Sobic003G262650--Sobic004G006100 Sobic001G228300 Sobic001G228300 Sobic003G262650--Sobic001G228300 Sobic005G142900 Sobic005G142900 Sobic003G262650--Sobic005G142900 Sobic002G124100 Sobic002G124100 Sobic003G262650--Sobic002G124100 Sobic003G262650--Sobic001G412200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.