Gene annotation
Transcriptome id Sobic.009G136200.1
Synonym Sb09g020210
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt C5YXT5
Pfam PF13812 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF816
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G14170 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os05g33920.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a043679
Brachypodium KQK06282
Barley HORVU1Hr1G063370.2 , HORVU1Hr1G063370.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G179600 pentatricopeptide, putative, expressed -
2 Sobic.001G412200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
3 Sobic.002G042900 pentatricopeptide, putative, expressed -
4 Sobic.001G001200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
5 Sobic.002G385200 pentatricopeptide, putative, expressed -
6 Sobic.003G051500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
7 Sobic.004G250100 pentatricopeptide, putative, expressed -
8 Sobic.002G167400 pentatricopeptide, putative, expressed -
9 Sobic.003G203100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
10 Sobic.010G066900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
11 Sobic.003G419800 pentatricopeptide repeat protein PPR1106-17, putative, expressed -
12 Sobic.001G081300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
13 Sobic.001G182300 GDSL-like lipase/acylhydrolase, putative, expressed -
14 Sobic.009G238700 EMB2744, putative, expressed -
15 Sobic.003G237100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CRR2, putative, expressed -
16 Sobic.001G527600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@radical SAM enzyme, putative, expressed K02495: hemN, oxygen-independent coproporphyrinogen III oxidase
17 Sobic.004G217900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -
18 Sobic.005G210700 pentatricopeptide repeat domain containing protein, putative, expressed -
19 Sobic.001G256400 pentatricopeptide, putative, expressed -
20 Sobic.006G054000 - -


Gene co-expression network
sample Sobic009G136200 Sobic009G136200 Sobic007G179600 Sobic007G179600 Sobic009G136200--Sobic007G179600 Sobic001G412200 Sobic001G412200 Sobic009G136200--Sobic001G412200 Sobic002G042900 Sobic002G042900 Sobic009G136200--Sobic002G042900 Sobic001G001200 Sobic001G001200 Sobic009G136200--Sobic001G001200 Sobic002G385200 Sobic002G385200 Sobic009G136200--Sobic002G385200 Sobic003G051500 Sobic003G051500 Sobic009G136200--Sobic003G051500 Sobic004G250100 Sobic004G250100 Sobic009G136200--Sobic004G250100 Sobic002G167400 Sobic002G167400 Sobic009G136200--Sobic002G167400 Sobic003G203100 Sobic003G203100 Sobic009G136200--Sobic003G203100 Sobic001G081300 Sobic001G081300 Sobic007G179600--Sobic001G081300 Sobic001G347100 Sobic001G347100 Sobic007G179600--Sobic001G347100 Sobic003G419800 Sobic003G419800 Sobic007G179600--Sobic003G419800 Sobic001G391101 Sobic001G391101 Sobic007G179600--Sobic001G391101 Sobic005G210700 Sobic005G210700 Sobic007G179600--Sobic005G210700 Sobic009G238700 Sobic009G238700 Sobic007G179600--Sobic009G238700 Sobic008G066900 Sobic008G066900 Sobic007G179600--Sobic008G066900 Sobic008G099900 Sobic008G099900 Sobic007G179600--Sobic008G099900 Sobic007G210801 Sobic007G210801 Sobic007G179600--Sobic007G210801 Sobic001G412200--Sobic003G051500 Sobic001G412200--Sobic007G179600 Sobic001G412200--Sobic001G081300 Sobic001G412200--Sobic003G419800 Sobic001G412200--Sobic009G136200 Sobic004G128666 Sobic004G128666 Sobic001G412200--Sobic004G128666 Sobic001G412200--Sobic001G001200 Sobic010G232700 Sobic010G232700 Sobic001G412200--Sobic010G232700 Sobic003G262650 Sobic003G262650 Sobic001G412200--Sobic003G262650 Sobic004G217900 Sobic004G217900 Sobic002G042900--Sobic004G217900 Sobic005G123900 Sobic005G123900 Sobic002G042900--Sobic005G123900 Sobic002G042900--Sobic001G001200 Sobic002G042900--Sobic009G136200 Sobic003G292932 Sobic003G292932 Sobic002G042900--Sobic003G292932 Sobic006G099501 Sobic006G099501 Sobic002G042900--Sobic006G099501 Sobic002G042900--Sobic007G179600 Sobic002G042900--Sobic003G051500 Sobic002G042900--Sobic003G419800 Sobic001G001200--Sobic003G051500 Sobic005G028300 Sobic005G028300 Sobic001G001200--Sobic005G028300 Sobic001G001200--Sobic003G419800 Sobic001G001200--Sobic001G391101 Sobic001G390900 Sobic001G390900 Sobic001G001200--Sobic001G390900 Sobic003G183900 Sobic003G183900 Sobic001G001200--Sobic003G183900 Sobic001G001200--Sobic001G081300 Sobic001G001200--Sobic007G179600 Sobic010G083900 Sobic010G083900 Sobic001G001200--Sobic010G083900 Sobic002G385200--Sobic005G210700 Sobic005G148500 Sobic005G148500 Sobic002G385200--Sobic005G148500 Sobic001G182300 Sobic001G182300 Sobic002G385200--Sobic001G182300 Sobic005G148400 Sobic005G148400 Sobic002G385200--Sobic005G148400 Sobic002G385200--Sobic006G099501 Sobic002G385200--Sobic001G001200 Sobic002G385200--Sobic008G066900 Sobic002G385200--Sobic007G179600 Sobic010G143400 Sobic010G143400 Sobic002G385200--Sobic010G143400 Sobic003G051500--Sobic001G391101 Sobic003G051500--Sobic001G001200 Sobic003G051500--Sobic005G028300 Sobic001G040600 Sobic001G040600 Sobic003G051500--Sobic001G040600 Sobic003G051500--Sobic001G081300 Sobic003G051500--Sobic003G419800 Sobic007G182600 Sobic007G182600 Sobic003G051500--Sobic007G182600 Sobic010G099300 Sobic010G099300 Sobic003G051500--Sobic010G099300 Sobic003G051500--Sobic004G217900 Sobic007G179500 Sobic007G179500 Sobic004G250100--Sobic007G179500 Sobic003G433600 Sobic003G433600 Sobic004G250100--Sobic003G433600 Sobic001G200600 Sobic001G200600 Sobic004G250100--Sobic001G200600 Sobic003G213800 Sobic003G213800 Sobic004G250100--Sobic003G213800 Sobic004G250100--Sobic010G143400 Sobic001G490700 Sobic001G490700 Sobic004G250100--Sobic001G490700 Sobic008G178300 Sobic008G178300 Sobic004G250100--Sobic008G178300 Sobic004G250100--Sobic002G385200 Sobic001G527600 Sobic001G527600 Sobic004G250100--Sobic001G527600 Sobic001G212200 Sobic001G212200 Sobic002G167400--Sobic001G212200 Sobic002G167400--Sobic003G203100 Sobic002G167400--Sobic003G051500 Sobic002G167400--Sobic004G217900 Sobic002G167400--Sobic005G028300 Sobic002G167400--Sobic001G001200 Sobic002G167400--Sobic009G136200 Sobic002G167400--Sobic002G042900 Sobic002G167400--Sobic001G391101 Sobic003G203100--Sobic010G232700 Sobic008G041000 Sobic008G041000 Sobic003G203100--Sobic008G041000 Sobic006G085900 Sobic006G085900 Sobic003G203100--Sobic006G085900 Sobic002G084400 Sobic002G084400 Sobic003G203100--Sobic002G084400 Sobic008G009300 Sobic008G009300 Sobic003G203100--Sobic008G009300 Sobic002G389200 Sobic002G389200 Sobic003G203100--Sobic002G389200 Sobic003G203100--Sobic001G490700 Sobic003G203100--Sobic002G167400 Sobic003G203100--Sobic005G210700
Octagon: transcription factors


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