Gene annotation
Transcriptome id Sobic.001G256400.3
Synonym Sb01g023020, SLO1
Functional annotation pentatricopeptide, putative, expressed
UniProt C5WMC4
Pfam PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF666
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G22410 : SLOW GROWTH 1
RAP-DB (Rice) LOC_Os10g26070.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a017837
Brachypodium KQJ96548
Barley HORVU7Hr1G094120.11 , HORVU7Hr1G094120.10 , HORVU7Hr1G094120.9 , HORVU7Hr1G094120.8 , HORVU7Hr1G094120.3 , HORVU7Hr1G094120.2 , HORVU7Hr1G094120.1 , HORVU7Hr1G094120.7 , HORVU7Hr1G094120.6 , HORVU7Hr1G094120.5 , HORVU7Hr1G094120.4
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G238700 EMB2744, putative, expressed -
2 Sobic.010G066900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
3 Sobic.001G347100 tetratricopeptide-like helical, putative, expressed -
4 Sobic.002G385200 pentatricopeptide, putative, expressed -
5 Sobic.001G412200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
6 Sobic.007G179600 pentatricopeptide, putative, expressed -
7 Sobic.003G203100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
8 Sobic.004G128666 - -
9 Sobic.003G299200 pentatricopeptide, putative, expressed -
10 Sobic.010G273400 expressed protein -
11 Sobic.005G210700 pentatricopeptide repeat domain containing protein, putative, expressed -
12 Sobic.010G232700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
13 Sobic.009G136200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
14 Sobic.006G054000 - -
15 Sobic.004G176500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
16 Sobic.001G149100 vegetative storage protein, putative, expressed -
17 Sobic.008G041000 expressed protein -
18 Sobic.002G172500 tetratricopeptide-like helical, putative, expressed -
19 Sobic.001G062750 - -
20 Sobic.002G198801 - -


Gene co-expression network
sample Sobic001G256400 Sobic001G256400 Sobic009G238700 Sobic009G238700 Sobic001G256400--Sobic009G238700 Sobic010G066900 Sobic010G066900 Sobic001G256400--Sobic010G066900 Sobic001G347100 Sobic001G347100 Sobic001G256400--Sobic001G347100 Sobic002G385200 Sobic002G385200 Sobic001G256400--Sobic002G385200 Sobic001G412200 Sobic001G412200 Sobic001G256400--Sobic001G412200 Sobic007G179600 Sobic007G179600 Sobic001G256400--Sobic007G179600 Sobic003G203100 Sobic003G203100 Sobic001G256400--Sobic003G203100 Sobic004G128666 Sobic004G128666 Sobic001G256400--Sobic004G128666 Sobic003G299200 Sobic003G299200 Sobic001G256400--Sobic003G299200 Sobic007G060600 Sobic007G060600 Sobic009G238700--Sobic007G060600 Sobic001G081300 Sobic001G081300 Sobic009G238700--Sobic001G081300 Sobic009G238700--Sobic001G347100 Sobic001G040600 Sobic001G040600 Sobic009G238700--Sobic001G040600 Sobic001G049800 Sobic001G049800 Sobic009G238700--Sobic001G049800 Sobic009G238700--Sobic007G179600 Sobic006G271900 Sobic006G271900 Sobic009G238700--Sobic006G271900 Sobic009G238700--Sobic003G299200 Sobic003G352100 Sobic003G352100 Sobic009G238700--Sobic003G352100 Sobic001G149100 Sobic001G149100 Sobic010G066900--Sobic001G149100 Sobic004G176500 Sobic004G176500 Sobic010G066900--Sobic004G176500 Sobic010G066900--Sobic009G238700 Sobic008G163400 Sobic008G163400 Sobic010G066900--Sobic008G163400 Sobic004G241000 Sobic004G241000 Sobic010G066900--Sobic004G241000 Sobic010G066900--Sobic003G299200 Sobic003G239000 Sobic003G239000 Sobic010G066900--Sobic003G239000 Sobic010G066900--Sobic001G347100 Sobic007G123100 Sobic007G123100 Sobic010G066900--Sobic007G123100 Sobic001G347100--Sobic001G149100 Sobic001G391101 Sobic001G391101 Sobic001G347100--Sobic001G391101 Sobic001G347100--Sobic001G081300 Sobic001G347100--Sobic009G238700 Sobic001G347100--Sobic007G179600 Sobic001G347100--Sobic003G299200 Sobic001G347100--Sobic004G241000 Sobic006G069100 Sobic006G069100 Sobic001G347100--Sobic006G069100 Sobic009G155400 Sobic009G155400 Sobic001G347100--Sobic009G155400 Sobic005G210700 Sobic005G210700 Sobic002G385200--Sobic005G210700 Sobic005G148500 Sobic005G148500 Sobic002G385200--Sobic005G148500 Sobic001G182300 Sobic001G182300 Sobic002G385200--Sobic001G182300 Sobic005G148400 Sobic005G148400 Sobic002G385200--Sobic005G148400 Sobic006G099501 Sobic006G099501 Sobic002G385200--Sobic006G099501 Sobic001G001200 Sobic001G001200 Sobic002G385200--Sobic001G001200 Sobic008G066900 Sobic008G066900 Sobic002G385200--Sobic008G066900 Sobic002G385200--Sobic007G179600 Sobic010G143400 Sobic010G143400 Sobic002G385200--Sobic010G143400 Sobic003G051500 Sobic003G051500 Sobic001G412200--Sobic003G051500 Sobic001G412200--Sobic007G179600 Sobic001G412200--Sobic001G081300 Sobic003G419800 Sobic003G419800 Sobic001G412200--Sobic003G419800 Sobic009G136200 Sobic009G136200 Sobic001G412200--Sobic009G136200 Sobic001G412200--Sobic004G128666 Sobic001G412200--Sobic001G001200 Sobic010G232700 Sobic010G232700 Sobic001G412200--Sobic010G232700 Sobic003G262650 Sobic003G262650 Sobic001G412200--Sobic003G262650 Sobic007G179600--Sobic001G081300 Sobic007G179600--Sobic001G347100 Sobic007G179600--Sobic003G419800 Sobic007G179600--Sobic001G391101 Sobic007G179600--Sobic005G210700 Sobic007G179600--Sobic009G238700 Sobic007G179600--Sobic008G066900 Sobic008G099900 Sobic008G099900 Sobic007G179600--Sobic008G099900 Sobic007G210801 Sobic007G210801 Sobic007G179600--Sobic007G210801 Sobic003G203100--Sobic010G232700 Sobic008G041000 Sobic008G041000 Sobic003G203100--Sobic008G041000 Sobic006G085900 Sobic006G085900 Sobic003G203100--Sobic006G085900 Sobic002G084400 Sobic002G084400 Sobic003G203100--Sobic002G084400 Sobic008G009300 Sobic008G009300 Sobic003G203100--Sobic008G009300 Sobic002G389200 Sobic002G389200 Sobic003G203100--Sobic002G389200 Sobic001G490700 Sobic001G490700 Sobic003G203100--Sobic001G490700 Sobic002G167400 Sobic002G167400 Sobic003G203100--Sobic002G167400 Sobic003G203100--Sobic005G210700 Sobic004G128666--Sobic001G412200 Sobic004G128666--Sobic004G176500 Sobic008G031200 Sobic008G031200 Sobic004G128666--Sobic008G031200 Sobic004G128666--Sobic002G084400 Sobic004G128666--Sobic009G238700 Sobic002G162000 Sobic002G162000 Sobic004G128666--Sobic002G162000 Sobic004G128666--Sobic010G232700 Sobic004G128666--Sobic006G085900 Sobic004G128666--Sobic003G051500 Sobic003G299200--Sobic001G149100 Sobic003G299200--Sobic001G347100 Sobic003G299200--Sobic001G081300 Sobic001G401400 Sobic001G401400 Sobic003G299200--Sobic001G401400 Sobic003G299200--Sobic009G238700 Sobic003G299200--Sobic008G163400 Sobic002G267600 Sobic002G267600 Sobic003G299200--Sobic002G267600 Sobic003G299200--Sobic003G051500 Sobic003G299200--Sobic001G040600
Octagon: transcription factors


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