Gene annotation
Transcriptome id Sobic.002G198801.1
Synonym -
Functional annotation -
UniProt A0A1W0W4Z1
Pfam PF13812 PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF841
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G56310 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os09g24520.2 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a046947
Brachypodium PNT64541
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G213000 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
2 Sobic.008G075100 hhH-GPD superfamily base excision DNA repair protein, putative, expressed K03575: A/G-specific adenine glycosylase
3 Sobic.006G276900 expressed protein -
4 Sobic.010G024500 expressed protein -
5 Sobic.003G352100 pentatricopeptide, putative, expressed -
6 Sobic.009G211100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
7 Sobic.008G113300 expressed protein -
8 Sobic.004G359500 expressed protein -
9 Sobic.009G238700 EMB2744, putative, expressed -
10 Sobic.005G163400 dnaJ domain containing protein, expressed -
11 Sobic.008G190000 leucine-rich repeat family protein, putative, expressed -
12 Sobic.003G153900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.007G038700 zinc finger, C3HC4 type domain containing protein, expressed K11985: TRAIP, TRAF-interacting protein
14 Sobic.002G113600 rhoGAP domain containing protein, expressed -
15 Sobic.007G067900 expressed protein -
16 Sobic.002G293700 ATXR, putative, expressed -
17 Sobic.006G142500 protein kinase, putative, expressed -
18 Sobic.001G390400 expressed protein -
19 Sobic.007G006800 pentatricopeptide, putative, expressed -
20 Sobic.009G200000 expressed protein -


Gene co-expression network
sample Sobic002G198801 Sobic002G198801 Sobic010G213000 Sobic010G213000 Sobic002G198801--Sobic010G213000 Sobic008G075100 Sobic008G075100 Sobic002G198801--Sobic008G075100 Sobic006G276900 Sobic006G276900 Sobic002G198801--Sobic006G276900 Sobic010G024500 Sobic010G024500 Sobic002G198801--Sobic010G024500 Sobic003G352100 Sobic003G352100 Sobic002G198801--Sobic003G352100 Sobic009G211100 Sobic009G211100 Sobic002G198801--Sobic009G211100 Sobic008G113300 Sobic008G113300 Sobic002G198801--Sobic008G113300 Sobic004G359500 Sobic004G359500 Sobic002G198801--Sobic004G359500 Sobic009G238700 Sobic009G238700 Sobic002G198801--Sobic009G238700 Sobic010G213000--Sobic006G276900 Sobic001G061400 Sobic001G061400 Sobic010G213000--Sobic001G061400 Sobic001G519100 Sobic001G519100 Sobic010G213000--Sobic001G519100 Sobic007G067900 Sobic007G067900 Sobic010G213000--Sobic007G067900 Sobic007G097100 Sobic007G097100 Sobic010G213000--Sobic007G097100 Sobic002G265200 Sobic002G265200 Sobic010G213000--Sobic002G265200 Sobic001G088400 Sobic001G088400 Sobic010G213000--Sobic001G088400 Sobic001G170301 Sobic001G170301 Sobic010G213000--Sobic001G170301 Sobic001G075700 Sobic001G075700 Sobic010G213000--Sobic001G075700 Sobic003G444300 Sobic003G444300 Sobic008G075100--Sobic003G444300 Sobic008G075100--Sobic008G113300 Sobic009G087300 Sobic009G087300 Sobic008G075100--Sobic009G087300 Sobic007G006800 Sobic007G006800 Sobic008G075100--Sobic007G006800 Sobic009G192700 Sobic009G192700 Sobic008G075100--Sobic009G192700 Sobic001G083300 Sobic001G083300 Sobic008G075100--Sobic001G083300 Sobic003G153900 Sobic003G153900 Sobic008G075100--Sobic003G153900 Sobic001G105800 Sobic001G105800 Sobic008G075100--Sobic001G105800 Sobic009G184200 Sobic009G184200 Sobic008G075100--Sobic009G184200 Sobic006G140801 Sobic006G140801 Sobic006G276900--Sobic006G140801 Sobic006G276900--Sobic010G213000 Sobic008G190000 Sobic008G190000 Sobic006G276900--Sobic008G190000 Sobic006G050900 Sobic006G050900 Sobic006G276900--Sobic006G050900 Sobic002G206100 Sobic002G206100 Sobic006G276900--Sobic002G206100 Sobic006G276900--Sobic007G067900 Sobic001G160000 Sobic001G160000 Sobic006G276900--Sobic001G160000 Sobic006G276900--Sobic001G075700 Sobic001G381100 Sobic001G381100 Sobic006G276900--Sobic001G381100 Sobic005G163400 Sobic005G163400 Sobic010G024500--Sobic005G163400 Sobic010G024500--Sobic008G190000 Sobic001G390400 Sobic001G390400 Sobic010G024500--Sobic001G390400 Sobic006G241800 Sobic006G241800 Sobic010G024500--Sobic006G241800 Sobic008G083500 Sobic008G083500 Sobic010G024500--Sobic008G083500 Sobic010G024500--Sobic001G381100 Sobic002G319300 Sobic002G319300 Sobic010G024500--Sobic002G319300 Sobic010G192500 Sobic010G192500 Sobic010G024500--Sobic010G192500 Sobic004G164700 Sobic004G164700 Sobic010G024500--Sobic004G164700 Sobic003G352100--Sobic009G238700 Sobic002G110500 Sobic002G110500 Sobic003G352100--Sobic002G110500 Sobic003G352100--Sobic008G113300 Sobic007G060600 Sobic007G060600 Sobic003G352100--Sobic007G060600 Sobic009G105400 Sobic009G105400 Sobic003G352100--Sobic009G105400 Sobic009G063500 Sobic009G063500 Sobic003G352100--Sobic009G063500 Sobic003G352100--Sobic007G006800 Sobic003G352100--Sobic003G153900 Sobic001G049800 Sobic001G049800 Sobic003G352100--Sobic001G049800 Sobic006G063800 Sobic006G063800 Sobic009G211100--Sobic006G063800 Sobic004G053100 Sobic004G053100 Sobic009G211100--Sobic004G053100 Sobic009G211100--Sobic002G198801 Sobic010G138700 Sobic010G138700 Sobic009G211100--Sobic010G138700 Sobic008G120000 Sobic008G120000 Sobic009G211100--Sobic008G120000 Sobic010G066900 Sobic010G066900 Sobic009G211100--Sobic010G066900 Sobic003G383200 Sobic003G383200 Sobic009G211100--Sobic003G383200 Sobic010G088200 Sobic010G088200 Sobic009G211100--Sobic010G088200 Sobic008G099900 Sobic008G099900 Sobic009G211100--Sobic008G099900 Sobic008G113300--Sobic007G006800 Sobic006G281900 Sobic006G281900 Sobic008G113300--Sobic006G281900 Sobic008G113300--Sobic004G164700 Sobic008G113300--Sobic006G241800 Sobic003G351900 Sobic003G351900 Sobic008G113300--Sobic003G351900 Sobic001G425700 Sobic001G425700 Sobic008G113300--Sobic001G425700 Sobic008G113300--Sobic005G163400 Sobic008G113300--Sobic003G153900 Sobic009G177200 Sobic009G177200 Sobic008G113300--Sobic009G177200 Sobic006G058000 Sobic006G058000 Sobic004G359500--Sobic006G058000 Sobic007G160300 Sobic007G160300 Sobic004G359500--Sobic007G160300 Sobic010G173700 Sobic010G173700 Sobic004G359500--Sobic010G173700 Sobic003G070600 Sobic003G070600 Sobic004G359500--Sobic003G070600 Sobic001G470200 Sobic001G470200 Sobic004G359500--Sobic001G470200 Sobic004G359500--Sobic001G390400 Sobic005G032600 Sobic005G032600 Sobic004G359500--Sobic005G032600 Sobic008G097700 Sobic008G097700 Sobic004G359500--Sobic008G097700 Sobic001G473500 Sobic001G473500 Sobic004G359500--Sobic001G473500 Sobic009G238700--Sobic007G060600 Sobic001G081300 Sobic001G081300 Sobic009G238700--Sobic001G081300 Sobic001G347100 Sobic001G347100 Sobic009G238700--Sobic001G347100 Sobic001G040600 Sobic001G040600 Sobic009G238700--Sobic001G040600 Sobic009G238700--Sobic001G049800 Sobic007G179600 Sobic007G179600 Sobic009G238700--Sobic007G179600 Sobic006G271900 Sobic006G271900 Sobic009G238700--Sobic006G271900 Sobic003G299200 Sobic003G299200 Sobic009G238700--Sobic003G299200 Sobic009G238700--Sobic003G352100
Octagon: transcription factors


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