Gene annotation
Transcriptome id Sobic.010G213000.1
Synonym Sb10g025950, SDE1, RDR6, SGS2
Functional annotation RNA-dependent RNA polymerase, putative, expressed
UniProt C5Z764
Pfam PF05183
Panther DB PTHR23079 PTHR23079:SF1
NCBI CDD -
KEGG Orthology K11699; RDR, RNA-dependent RNA polymerase
Gene Ontology GO:0003968; RNA-directed 5'-3' RNA polymerase activity


Orthologs (automatic annotation)
TAIR AT3G49500 : RNA-dependent RNA polymerase 6
RAP-DB (Rice) LOC_Os01g34350.1 : RNA-dependent RNA polymerase, putative, expressed
MaizeGDB (Corn) Zm00025a051648 , Zm00025a051644 , Zm00025a051641 , Zm00025a051643 , Zm00025a024823
Brachypodium -
Barley HORVU3Hr1G107690.2 , HORVU3Hr1G107690.3
Wheat TraesCS3D02G489400 , TraesCS3B02G543300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G276900 expressed protein -
2 Sobic.001G061400 protein kinase, putative, expressed -
3 Sobic.001G519100 MYB family transcription factor, putative, expressed -
4 Sobic.007G067900 expressed protein -
5 Sobic.007G097100 aspartic proteinase nepenthesin precursor, putative, expressed -
6 Sobic.002G265200 formin, putative, expressed -
7 Sobic.001G088400 kinesin motor domain containing protein, putative, expressed K10400: kinesin family member 15
8 Sobic.001G170301 - -
9 Sobic.001G075700 AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed K09285: OVM, AP2-like factor, ANT lineage
10 Sobic.001G221601 - -
11 Sobic.002G206100 aspartic proteinase, putative, expressed -
12 Sobic.002G113600 rhoGAP domain containing protein, expressed -
13 Sobic.001G499800 expansin precursor, putative, expressed -
14 Sobic.008G190000 leucine-rich repeat family protein, putative, expressed -
15 Sobic.003G043900 kinesin-4, putative, expressed K10406: kinesin family member C2/C3
16 Sobic.001G320000 OsSub61 - Putative Subtilisin homologue, expressed -
17 Sobic.009G200000 expressed protein -
18 Sobic.005G092700 expressed protein -
19 Sobic.006G050900 expressed protein -
20 Sobic.008G042200 DUF623 domain containing protein, expressed -


Gene co-expression network
sample Sobic010G213000 Sobic010G213000 Sobic006G276900 Sobic006G276900 Sobic010G213000--Sobic006G276900 Sobic001G061400 Sobic001G061400 Sobic010G213000--Sobic001G061400 Sobic001G519100 Sobic001G519100 Sobic010G213000--Sobic001G519100 Sobic007G067900 Sobic007G067900 Sobic010G213000--Sobic007G067900 Sobic007G097100 Sobic007G097100 Sobic010G213000--Sobic007G097100 Sobic002G265200 Sobic002G265200 Sobic010G213000--Sobic002G265200 Sobic001G088400 Sobic001G088400 Sobic010G213000--Sobic001G088400 Sobic001G170301 Sobic001G170301 Sobic010G213000--Sobic001G170301 Sobic001G075700 Sobic001G075700 Sobic010G213000--Sobic001G075700 Sobic006G140801 Sobic006G140801 Sobic006G276900--Sobic006G140801 Sobic006G276900--Sobic010G213000 Sobic008G190000 Sobic008G190000 Sobic006G276900--Sobic008G190000 Sobic006G050900 Sobic006G050900 Sobic006G276900--Sobic006G050900 Sobic002G206100 Sobic002G206100 Sobic006G276900--Sobic002G206100 Sobic006G276900--Sobic007G067900 Sobic001G160000 Sobic001G160000 Sobic006G276900--Sobic001G160000 Sobic006G276900--Sobic001G075700 Sobic001G381100 Sobic001G381100 Sobic006G276900--Sobic001G381100 Sobic001G061400--Sobic010G213000 Sobic001G061400--Sobic001G519100 Sobic001G061400--Sobic006G276900 Sobic001G061400--Sobic007G067900 Sobic010G160500 Sobic010G160500 Sobic001G061400--Sobic010G160500 Sobic001G061400--Sobic002G265200 Sobic009G118500 Sobic009G118500 Sobic001G061400--Sobic009G118500 Sobic004G329600 Sobic004G329600 Sobic001G061400--Sobic004G329600 Sobic006G219950 Sobic006G219950 Sobic001G061400--Sobic006G219950 Sobic001G519100--Sobic010G213000 Sobic001G499800 Sobic001G499800 Sobic001G519100--Sobic001G499800 Sobic001G519100--Sobic007G097100 Sobic008G112550 Sobic008G112550 Sobic001G519100--Sobic008G112550 Sobic001G519100--Sobic001G061400 Sobic009G026850 Sobic009G026850 Sobic001G519100--Sobic009G026850 Sobic001G320000 Sobic001G320000 Sobic001G519100--Sobic001G320000 Sobic004G142400 Sobic004G142400 Sobic001G519100--Sobic004G142400 Sobic001G166100 Sobic001G166100 Sobic001G519100--Sobic001G166100 Sobic007G067900--Sobic006G276900 Sobic007G067900--Sobic006G140801 Sobic007G067900--Sobic010G213000 Sobic001G135600 Sobic001G135600 Sobic007G067900--Sobic001G135600 Sobic007G067900--Sobic001G088400 Sobic010G206400 Sobic010G206400 Sobic007G067900--Sobic010G206400 Sobic007G067900--Sobic002G206100 Sobic002G113600 Sobic002G113600 Sobic007G067900--Sobic002G113600 Sobic005G164900 Sobic005G164900 Sobic007G067900--Sobic005G164900 Sobic006G172000 Sobic006G172000 Sobic007G097100--Sobic006G172000 Sobic007G097100--Sobic001G320000 Sobic001G493100 Sobic001G493100 Sobic007G097100--Sobic001G493100 Sobic007G097100--Sobic004G142400 Sobic007G160400 Sobic007G160400 Sobic007G097100--Sobic007G160400 Sobic006G226000 Sobic006G226000 Sobic007G097100--Sobic006G226000 Sobic003G350400 Sobic003G350400 Sobic007G097100--Sobic003G350400 Sobic006G135800 Sobic006G135800 Sobic007G097100--Sobic006G135800 Sobic006G041700 Sobic006G041700 Sobic007G097100--Sobic006G041700 Sobic002G265200--Sobic007G097100 Sobic006G016700 Sobic006G016700 Sobic002G265200--Sobic006G016700 Sobic006G197400 Sobic006G197400 Sobic002G265200--Sobic006G197400 Sobic002G265200--Sobic003G350400 Sobic001G112500 Sobic001G112500 Sobic002G265200--Sobic001G112500 Sobic006G255300 Sobic006G255300 Sobic002G265200--Sobic006G255300 Sobic002G256900 Sobic002G256900 Sobic002G265200--Sobic002G256900 Sobic001G068132 Sobic001G068132 Sobic002G265200--Sobic001G068132 Sobic003G086800 Sobic003G086800 Sobic002G265200--Sobic003G086800 Sobic001G088400--Sobic007G067900 Sobic001G088400--Sobic002G113600 Sobic004G073800 Sobic004G073800 Sobic001G088400--Sobic004G073800 Sobic009G192700 Sobic009G192700 Sobic001G088400--Sobic009G192700 Sobic006G137300 Sobic006G137300 Sobic001G088400--Sobic006G137300 Sobic001G088400--Sobic010G213000 Sobic002G294300 Sobic002G294300 Sobic001G088400--Sobic002G294300 Sobic001G088400--Sobic005G164900 Sobic010G158832 Sobic010G158832 Sobic001G088400--Sobic010G158832 Sobic001G170301--Sobic001G499800 Sobic003G247000 Sobic003G247000 Sobic001G170301--Sobic003G247000 Sobic001G170301--Sobic010G213000 Sobic001G170301--Sobic001G320000 Sobic001G366600 Sobic001G366600 Sobic001G170301--Sobic001G366600 Sobic002G221450 Sobic002G221450 Sobic001G170301--Sobic002G221450 Sobic002G051900 Sobic002G051900 Sobic001G170301--Sobic002G051900 Sobic009G222400 Sobic009G222400 Sobic001G170301--Sobic009G222400 Sobic007G023500 Sobic007G023500 Sobic001G170301--Sobic007G023500 Sobic001G075700--Sobic001G160000 Sobic005G092700 Sobic005G092700 Sobic001G075700--Sobic005G092700 Sobic008G042200 Sobic008G042200 Sobic001G075700--Sobic008G042200 Sobic001G075700--Sobic008G190000 Sobic005G125300 Sobic005G125300 Sobic001G075700--Sobic005G125300 Sobic004G302700 Sobic004G302700 Sobic001G075700--Sobic004G302700 Sobic009G200000 Sobic009G200000 Sobic001G075700--Sobic009G200000 Sobic006G187000 Sobic006G187000 Sobic001G075700--Sobic006G187000 Sobic003G366000 Sobic003G366000 Sobic001G075700--Sobic003G366000
Octagon: transcription factors


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