Gene annotation
Transcriptome id Sobic.003G352100.3,Sobic.003G352100.1,Sobic.003G352100.4,Sobic.003G352100.2
Synonym Sb03g039460
Functional annotation pentatricopeptide, putative, expressed
UniProt C5XPP5
Pfam PF13041
Panther DB PTHR24015
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G11690 : Pentatricopeptide repeat (PPR-like) superfamily protein
RAP-DB (Rice) LOC_Os05g50690.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a026911
Brachypodium KQK16233
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G238700 EMB2744, putative, expressed -
2 Sobic.002G110500 expressed protein K14308: NUP54, nuclear pore complex protein Nup54
3 Sobic.008G113300 expressed protein -
4 Sobic.007G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
5 Sobic.009G105400 OsFBX135 - F-box domain containing protein, expressed -
6 Sobic.009G063500 OsWAK75 - OsWAK receptor-like protein kinase, expressed -
7 Sobic.007G006800 pentatricopeptide, putative, expressed -
8 Sobic.003G153900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.001G049800 DDT domain containing protein, putative, expressed -
10 Sobic.008G031200 pentatricopeptide, putative, expressed -
11 Sobic.006G008300 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
12 Sobic.005G088900 AGAP007117-PA, putative, expressed -
13 Sobic.001G097400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphatidylinositol kinase, putative, expressed -
14 Sobic.005G013300 vacuolar-sorting receptor precursor, putative, expressed -
15 Sobic.006G281900 down-regulated TF in developmental senescence(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
16 Sobic.001G211500 LIG1 - Putative DNA ligase I, expressed K10747: DNA ligase 1
17 Sobic.010G277200 zinc knuckle domain containing protein, expressed K10904: TIMELESS-interacting protein
18 Sobic.006G106200 NAP domain containing protein, putative, expressed K11290: SET, TAF1, template-activating factor I
19 Sobic.001G408300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.001G199500 heat shock protein DnaJ, putative, expressed K09531: DnaJ homolog subfamily C member 11


Gene co-expression network
sample Sobic003G352100 Sobic003G352100 Sobic009G238700 Sobic009G238700 Sobic003G352100--Sobic009G238700 Sobic002G110500 Sobic002G110500 Sobic003G352100--Sobic002G110500 Sobic008G113300 Sobic008G113300 Sobic003G352100--Sobic008G113300 Sobic007G060600 Sobic007G060600 Sobic003G352100--Sobic007G060600 Sobic009G105400 Sobic009G105400 Sobic003G352100--Sobic009G105400 Sobic009G063500 Sobic009G063500 Sobic003G352100--Sobic009G063500 Sobic007G006800 Sobic007G006800 Sobic003G352100--Sobic007G006800 Sobic003G153900 Sobic003G153900 Sobic003G352100--Sobic003G153900 Sobic001G049800 Sobic001G049800 Sobic003G352100--Sobic001G049800 Sobic009G238700--Sobic007G060600 Sobic001G081300 Sobic001G081300 Sobic009G238700--Sobic001G081300 Sobic001G347100 Sobic001G347100 Sobic009G238700--Sobic001G347100 Sobic001G040600 Sobic001G040600 Sobic009G238700--Sobic001G040600 Sobic009G238700--Sobic001G049800 Sobic007G179600 Sobic007G179600 Sobic009G238700--Sobic007G179600 Sobic006G271900 Sobic006G271900 Sobic009G238700--Sobic006G271900 Sobic003G299200 Sobic003G299200 Sobic009G238700--Sobic003G299200 Sobic009G238700--Sobic003G352100 Sobic005G088900 Sobic005G088900 Sobic002G110500--Sobic005G088900 Sobic002G110500--Sobic007G006800 Sobic009G216500 Sobic009G216500 Sobic002G110500--Sobic009G216500 Sobic010G250800 Sobic010G250800 Sobic002G110500--Sobic010G250800 Sobic001G097400 Sobic001G097400 Sobic002G110500--Sobic001G097400 Sobic006G106200 Sobic006G106200 Sobic002G110500--Sobic006G106200 Sobic001G199500 Sobic001G199500 Sobic002G110500--Sobic001G199500 Sobic009G031500 Sobic009G031500 Sobic002G110500--Sobic009G031500 Sobic010G041000 Sobic010G041000 Sobic002G110500--Sobic010G041000 Sobic008G113300--Sobic007G006800 Sobic006G281900 Sobic006G281900 Sobic008G113300--Sobic006G281900 Sobic004G164700 Sobic004G164700 Sobic008G113300--Sobic004G164700 Sobic006G241800 Sobic006G241800 Sobic008G113300--Sobic006G241800 Sobic003G351900 Sobic003G351900 Sobic008G113300--Sobic003G351900 Sobic001G425700 Sobic001G425700 Sobic008G113300--Sobic001G425700 Sobic005G163400 Sobic005G163400 Sobic008G113300--Sobic005G163400 Sobic008G113300--Sobic003G153900 Sobic009G177200 Sobic009G177200 Sobic008G113300--Sobic009G177200 Sobic007G060600--Sobic001G049800 Sobic007G060600--Sobic001G040600 Sobic007G059700 Sobic007G059700 Sobic007G060600--Sobic007G059700 Sobic004G151000 Sobic004G151000 Sobic007G060600--Sobic004G151000 Sobic004G027300 Sobic004G027300 Sobic007G060600--Sobic004G027300 Sobic006G273900 Sobic006G273900 Sobic007G060600--Sobic006G273900 Sobic007G060600--Sobic009G238700 Sobic006G111200 Sobic006G111200 Sobic007G060600--Sobic006G111200 Sobic009G191500 Sobic009G191500 Sobic007G060600--Sobic009G191500 Sobic006G088820 Sobic006G088820 Sobic009G105400--Sobic006G088820 Sobic001G453500 Sobic001G453500 Sobic009G105400--Sobic001G453500 Sobic006G008300 Sobic006G008300 Sobic009G105400--Sobic006G008300 Sobic002G168000 Sobic002G168000 Sobic009G105400--Sobic002G168000 Sobic004G199200 Sobic004G199200 Sobic009G105400--Sobic004G199200 Sobic001G264201 Sobic001G264201 Sobic009G105400--Sobic001G264201 Sobic009G105400--Sobic009G191500 Sobic010G143600 Sobic010G143600 Sobic009G105400--Sobic010G143600 Sobic008G068100 Sobic008G068100 Sobic009G105400--Sobic008G068100 Sobic001G242300 Sobic001G242300 Sobic009G063500--Sobic001G242300 Sobic008G082800 Sobic008G082800 Sobic009G063500--Sobic008G082800 Sobic008G031200 Sobic008G031200 Sobic009G063500--Sobic008G031200 Sobic006G085900 Sobic006G085900 Sobic009G063500--Sobic006G085900 Sobic008G169400 Sobic008G169400 Sobic009G063500--Sobic008G169400 Sobic006G262700 Sobic006G262700 Sobic009G063500--Sobic006G262700 Sobic003G397100 Sobic003G397100 Sobic009G063500--Sobic003G397100 Sobic004G241000 Sobic004G241000 Sobic009G063500--Sobic004G241000 Sobic009G063500--Sobic010G143600 Sobic007G006800--Sobic010G250800 Sobic007G006800--Sobic001G199500 Sobic001G408300 Sobic001G408300 Sobic007G006800--Sobic001G408300 Sobic007G006800--Sobic005G088900 Sobic007G006800--Sobic008G113300 Sobic002G021200 Sobic002G021200 Sobic007G006800--Sobic002G021200 Sobic007G006800--Sobic006G281900 Sobic003G369200 Sobic003G369200 Sobic007G006800--Sobic003G369200 Sobic002G215200 Sobic002G215200 Sobic007G006800--Sobic002G215200 Sobic003G153900--Sobic003G351900 Sobic003G153900--Sobic008G169400 Sobic003G153900--Sobic002G021200 Sobic003G153900--Sobic006G281900 Sobic001G079900 Sobic001G079900 Sobic003G153900--Sobic001G079900 Sobic002G370400 Sobic002G370400 Sobic003G153900--Sobic002G370400 Sobic001G369800 Sobic001G369800 Sobic003G153900--Sobic001G369800 Sobic009G212100 Sobic009G212100 Sobic003G153900--Sobic009G212100 Sobic003G153900--Sobic006G008300 Sobic001G049800--Sobic007G060600 Sobic001G049800--Sobic004G151000 Sobic001G049800--Sobic004G027300 Sobic001G544300 Sobic001G544300 Sobic001G049800--Sobic001G544300 Sobic010G224700 Sobic010G224700 Sobic001G049800--Sobic010G224700 Sobic001G049800--Sobic006G111200 Sobic006G059500 Sobic006G059500 Sobic001G049800--Sobic006G059500 Sobic002G378100 Sobic002G378100 Sobic001G049800--Sobic002G378100 Sobic010G083900 Sobic010G083900 Sobic001G049800--Sobic010G083900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.