Gene annotation
Transcriptome id Sobic.008G075100.2
Synonym Sb08g006760
Functional annotation hhH-GPD superfamily base excision DNA repair protein, putative, expressed
UniProt A0A1Z5R6E2
Pfam PF14815 PF00730
Panther DB PTHR10359
NCBI CDD -
KEGG Orthology K03575; A/G-specific adenine glycosylase
Gene Ontology GO:0006284; base-excision repair


Orthologs (automatic annotation)
TAIR AT4G12740 : HhH-GPD base excision DNA repair family protein
RAP-DB (Rice) LOC_Os12g10850.1 : hhH-GPD superfamily base excision DNA repair protein, putative, expressed
MaizeGDB (Corn) Zm00025a054461
Brachypodium KQJ91847
Barley HORVU0Hr1G040530.8 , HORVU0Hr1G040530.9 , HORVU0Hr1G040530.4 , HORVU0Hr1G040530.5 , HORVU0Hr1G040530.10 , HORVU0Hr1G040530.11 , HORVU0Hr1G040530.13 , HORVU0Hr1G040530.14 , HORVU0Hr1G040530.16 , HORVU0Hr1G040530.17 , HORVU0Hr1G040530.29 , HORVU0Hr1G040530.28 , HORVU0Hr1G040530.25 , HORVU0Hr1G040530.24 , HORVU0Hr1G040530.27 , HORVU0Hr1G040530.21
Wheat TraesCS7B02G297100 , TraesCS7A02G395200 , TraesCS7D02G390800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G444300 expressed protein K11550: SPBC25, kinetochore protein Spc25, animal type
2 Sobic.008G113300 expressed protein -
3 Sobic.009G087300 mitotic checkpoint family protein, putative, expressed -
4 Sobic.007G006800 pentatricopeptide, putative, expressed -
5 Sobic.009G192700 ATBARD1/BARD1, putative, expressed K10683: BRCA1-associated RING domain protein 1
6 Sobic.001G083300 transducin family protein, putative, expressed K02180: cell cycle arrest protein BUB3
7 Sobic.003G153900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.001G105800 OsFBX109 - F-box domain containing protein, expressed -
9 Sobic.009G184200 RecF/RecN/SMC N terminal domain containing protein, expressed K06675: structural maintenance of chromosome 4
10 Sobic.006G029300 expressed protein K15505: DNA repair protein RAD5
11 Sobic.003G318900 DNA repair metallo-beta-lactamase, putative, expressed K15341: DCLRE1B, DNA cross-link repair 1B protein
12 Sobic.002G021200 expressed protein K19001: HELLS, ATP-dependent DNA helicase
13 Sobic.010G147700 WD domain, G-beta repeat domain containing protein, expressed K11274: WDHD1, chromosome transmission fidelity protein 4
14 Sobic.009G172950 - K02541: DNA replication licensing factor MCM3
15 Sobic.003G201000 WD domain, G-beta repeat domain containing protein, expressed -
16 Sobic.007G199600 MBTB32 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
17 Sobic.001G169800 cyclin, putative, expressed K06627: cyclin-A
18 Sobic.006G196600 expressed protein -
19 Sobic.002G204400 kinesin motor protein-related, putative, expressed K11498: centromeric protein E
20 Sobic.003G032200 IQ calmodulin-binding motif domain containing protein, expressed -


Gene co-expression network
sample Sobic008G075100 Sobic008G075100 Sobic003G444300 Sobic003G444300 Sobic008G075100--Sobic003G444300 Sobic008G113300 Sobic008G113300 Sobic008G075100--Sobic008G113300 Sobic009G087300 Sobic009G087300 Sobic008G075100--Sobic009G087300 Sobic007G006800 Sobic007G006800 Sobic008G075100--Sobic007G006800 Sobic009G192700 Sobic009G192700 Sobic008G075100--Sobic009G192700 Sobic001G083300 Sobic001G083300 Sobic008G075100--Sobic001G083300 Sobic003G153900 Sobic003G153900 Sobic008G075100--Sobic003G153900 Sobic001G105800 Sobic001G105800 Sobic008G075100--Sobic001G105800 Sobic009G184200 Sobic009G184200 Sobic008G075100--Sobic009G184200 Sobic001G456500 Sobic001G456500 Sobic003G444300--Sobic001G456500 Sobic003G444300--Sobic001G083300 Sobic001G169800 Sobic001G169800 Sobic003G444300--Sobic001G169800 Sobic003G444300--Sobic001G105800 Sobic001G142000 Sobic001G142000 Sobic003G444300--Sobic001G142000 Sobic004G331600 Sobic004G331600 Sobic003G444300--Sobic004G331600 Sobic003G201000 Sobic003G201000 Sobic003G444300--Sobic003G201000 Sobic002G303800 Sobic002G303800 Sobic003G444300--Sobic002G303800 Sobic010G105400 Sobic010G105400 Sobic003G444300--Sobic010G105400 Sobic008G113300--Sobic007G006800 Sobic006G281900 Sobic006G281900 Sobic008G113300--Sobic006G281900 Sobic004G164700 Sobic004G164700 Sobic008G113300--Sobic004G164700 Sobic006G241800 Sobic006G241800 Sobic008G113300--Sobic006G241800 Sobic003G351900 Sobic003G351900 Sobic008G113300--Sobic003G351900 Sobic001G425700 Sobic001G425700 Sobic008G113300--Sobic001G425700 Sobic005G163400 Sobic005G163400 Sobic008G113300--Sobic005G163400 Sobic008G113300--Sobic003G153900 Sobic009G177200 Sobic009G177200 Sobic008G113300--Sobic009G177200 Sobic002G204400 Sobic002G204400 Sobic009G087300--Sobic002G204400 Sobic009G087300--Sobic010G105400 Sobic005G144600 Sobic005G144600 Sobic009G087300--Sobic005G144600 Sobic009G087300--Sobic002G303800 Sobic009G087300--Sobic003G201000 Sobic001G122100 Sobic001G122100 Sobic009G087300--Sobic001G122100 Sobic009G087300--Sobic003G444300 Sobic006G281400 Sobic006G281400 Sobic009G087300--Sobic006G281400 Sobic005G000500 Sobic005G000500 Sobic009G087300--Sobic005G000500 Sobic010G250800 Sobic010G250800 Sobic007G006800--Sobic010G250800 Sobic001G199500 Sobic001G199500 Sobic007G006800--Sobic001G199500 Sobic001G408300 Sobic001G408300 Sobic007G006800--Sobic001G408300 Sobic005G088900 Sobic005G088900 Sobic007G006800--Sobic005G088900 Sobic007G006800--Sobic008G113300 Sobic002G021200 Sobic002G021200 Sobic007G006800--Sobic002G021200 Sobic007G006800--Sobic006G281900 Sobic003G369200 Sobic003G369200 Sobic007G006800--Sobic003G369200 Sobic002G215200 Sobic002G215200 Sobic007G006800--Sobic002G215200 Sobic002G272300 Sobic002G272300 Sobic009G192700--Sobic002G272300 Sobic005G164900 Sobic005G164900 Sobic009G192700--Sobic005G164900 Sobic003G008700 Sobic003G008700 Sobic009G192700--Sobic003G008700 Sobic009G192700--Sobic008G075100 Sobic002G113600 Sobic002G113600 Sobic009G192700--Sobic002G113600 Sobic003G043900 Sobic003G043900 Sobic009G192700--Sobic003G043900 Sobic001G230300 Sobic001G230300 Sobic009G192700--Sobic001G230300 Sobic004G020600 Sobic004G020600 Sobic009G192700--Sobic004G020600 Sobic001G088400 Sobic001G088400 Sobic009G192700--Sobic001G088400 Sobic001G083300--Sobic001G456500 Sobic002G223900 Sobic002G223900 Sobic001G083300--Sobic002G223900 Sobic001G083300--Sobic003G444300 Sobic010G147700 Sobic010G147700 Sobic001G083300--Sobic010G147700 Sobic009G087000 Sobic009G087000 Sobic001G083300--Sobic009G087000 Sobic003G183700 Sobic003G183700 Sobic001G083300--Sobic003G183700 Sobic008G129200 Sobic008G129200 Sobic001G083300--Sobic008G129200 Sobic001G083300--Sobic001G105800 Sobic001G083300--Sobic004G331600 Sobic003G153900--Sobic003G351900 Sobic008G169400 Sobic008G169400 Sobic003G153900--Sobic008G169400 Sobic003G153900--Sobic002G021200 Sobic003G153900--Sobic006G281900 Sobic001G079900 Sobic001G079900 Sobic003G153900--Sobic001G079900 Sobic002G370400 Sobic002G370400 Sobic003G153900--Sobic002G370400 Sobic001G369800 Sobic001G369800 Sobic003G153900--Sobic001G369800 Sobic009G212100 Sobic009G212100 Sobic003G153900--Sobic009G212100 Sobic006G008300 Sobic006G008300 Sobic003G153900--Sobic006G008300 Sobic007G007800 Sobic007G007800 Sobic001G105800--Sobic007G007800 Sobic001G105800--Sobic002G223900 Sobic001G105800--Sobic009G184200 Sobic001G105800--Sobic003G444300 Sobic003G387700 Sobic003G387700 Sobic001G105800--Sobic003G387700 Sobic001G105800--Sobic001G083300 Sobic001G105800--Sobic001G456500 Sobic001G105800--Sobic010G105400 Sobic009G172950 Sobic009G172950 Sobic001G105800--Sobic009G172950 Sobic009G184200--Sobic002G204400 Sobic009G184200--Sobic010G105400 Sobic001G398400 Sobic001G398400 Sobic009G184200--Sobic001G398400 Sobic003G393100 Sobic003G393100 Sobic009G184200--Sobic003G393100 Sobic010G129700 Sobic010G129700 Sobic009G184200--Sobic010G129700 Sobic003G032200 Sobic003G032200 Sobic009G184200--Sobic003G032200 Sobic001G170800 Sobic001G170800 Sobic009G184200--Sobic001G170800 Sobic009G184200--Sobic007G007800 Sobic003G260700 Sobic003G260700 Sobic009G184200--Sobic003G260700
Octagon: transcription factors


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